BAC Information

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BAC

Clone NameB6Ng01-288M08
Chromosome4 (Build37)
Map Location 146,857,503 - 147,020,934
singlet/doubletdoublet
Overlap geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneLOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M08.bB6Ng01-288M08.g
ACCGA086350GA086351
length8341,072
definitionB6Ng01-288M08.b B6Ng01-288M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,857,503 - 146,858,332)(147,019,876 - 147,020,934)
sequence
gaattcatatgcctcctcagagagctttgtagatattaatcatatgaaga
tacagtgcaggtttgattggattagaaagtttacattataaagcaccatc
atatgggttgtgactattaatatttactgtgtgaagttatattctccatt
aaacatgaagataagatagcagtaagatattgctgaggagaagatctatt
gtaggttctgttaaccctgaacgtcaccagagaaaaaccaactacagcat
gtgggcaagatttattaaatattacatcctgagaaaaagacagactttgg
acacatgctacagggagttttaaagataatcacatagttcattgtggttt
cccatgagtctttatgattttcctttgtcttgcacatggcagcattccag
taaagtacctggttcgtgggcaagtggtgcttattggttaatttggggct
ttacagtctgagggagaaaggagccagagttttctggctgggtctaggca
taaccagcctaggagaagaggggaaggggtatggaggaagtgaagagagg
atagaggcctgggcaaaagaggaaccaggagccatagaaaccacctagcc
aacaatgtccacatggatattgttaatttgacacaccagttatcgtttta
tccagtgagagggtcactgggcaagagactttggtctggtccatggctgg
agcccaggaaggccttctagctggaggttacacagggttatttagaggac
agcctatcctgtttttttaatcatggagggccttgatgaacagagacagc
aatagtttttagagctttattgttgaaaggcaga
gaattctggagatgtctcacacctgattgcttgaaagaaaaaaacctaac
atccaattcctgggataagaattggagggtggaatttctggatggaaaaa
gtgatgtagggaagagaaagcaggtggaagagattaagtgggagaaagag
aagagaacagataaatgggaacaggggcagagaggtaaagagcaagctac
acatgaggtcataggcttgaatagtctgaaatttaaatgatcggtggtag
actgcttcagtgaaaggcttatggtttaaactatataaaaacctccttct
cattatttataacactggtgtgtccacaagtactcccactacactcacat
ccatatgcaatatgcatatatatatatatacatacatatatatatacata
tatatgcacacacatatatatgcacaaacacacatacacacacatatata
tgtaaaacttttcacaagggtgctttgggtatttaagtcaaattagatat
tgattggttattcacaataaattcatgacatcattgacctagcatatttt
ggaggaaggacaaattttagatcaatgtctttttggttggttctgtgtat
gtatttcactttttgtagcttgcaaagcccttcccataatgaggactgtg
gaacgtaagagccaatgttcttggaggcaccagcttgacctctttataca
cagtgagttgtgcaagtctgctcgttagcaaatgaagacttattgtcagt
ttgtaaaaagcaacaccttttgtttgtcggtgccctgcagtgttcgttta
ttttttattgaaaccacttttgtagaacaactcagttgataaaacacagt
ggaaaagacaagatcaactggaaactccatctctttcagaattcagagac
ttaatttataatcaccttcatacacttataagctggttcttttaaaaaaa
aaaaaatccaaacatcttactaagaatacagcccagcccgaactccatgg
agtttttgtaccatggggctttcctatgcatttgcaagaaaccacaagtg
ttggcaaatgcagtgtacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146857503_146858332
seq2: B6Ng01-288M08.b_49_882

seq1  GAATTCATATGCCTCCTCAGAGAGCTTTGTAGATATTAATCATATGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCCTCCTCAGAGAGCTTTGTAGATATTAATCATATGAAGA  50

seq1  TACAGTGCAGGTTTGATTGGATTAGAAAGTTTACATTATAAAGCACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCAGGTTTGATTGGATTAGAAAGTTTACATTATAAAGCACCATC  100

seq1  ATATGGGTTGTGACTATTAATATTTACTGTGTGAAGTTATATTCTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGTTGTGACTATTAATATTTACTGTGTGAAGTTATATTCTCCATT  150

seq1  AAACATGAAGATAAGATAGCAGTAAGATATTGCTGAGGAGAAGATCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAGATAAGATAGCAGTAAGATATTGCTGAGGAGAAGATCTATT  200

seq1  GTAGGTTCTGTTAACCCTGAACGTCACCAGAGAAAAACCAACTACAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCTGTTAACCCTGAACGTCACCAGAGAAAAACCAACTACAGCAT  250

seq1  GTGGCCAAGATTTATTAAATATTACATCCTGAGAAAAAGACAGACTTTGG  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAAGATTTATTAAATATTACATCCTGAGAAAAAGACAGACTTTGG  300

seq1  ACACATGCTACAGGGAGTTTTAAAGATAATCACATAGTTCATTGTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTACAGGGAGTTTTAAAGATAATCACATAGTTCATTGTGGTTT  350

seq1  CCCATGAGTCTTTATGATTTTCCTTTGTCTTGCACATGGCAGCATTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGTCTTTATGATTTTCCTTTGTCTTGCACATGGCAGCATTCCAG  400

seq1  TAAAGTACCTGGTTCGTGGGCAAGTGGTGCTTATTGGTTAATTTGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACCTGGTTCGTGGGCAAGTGGTGCTTATTGGTTAATTTGGGGCT  450

seq1  TTACAGTCTGAGGGAGAAAGGAGCCAGAGTTTTCTGGCTGGGTCTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTGAGGGAGAAAGGAGCCAGAGTTTTCTGGCTGGGTCTAGGCA  500

seq1  TAACCAGCCCAGGAGAAGAGGGGAAGGGGTATGGAGGAAGTGAAGAGAGG  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCCTAGGAGAAGAGGGGAAGGGGTATGGAGGAAGTGAAGAGAGG  550

seq1  ATAGAGGCCTGGGCAAAAGAGCAACCAGGAGCCA-AGAAACCACCTAGCC  599
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  ATAGAGGCCTGGGCAAAAGAGGAACCAGGAGCCATAGAAACCACCTAGCC  600

seq1  AACAATGTCCACATGGATA-TGTTAA-TTGACACACCAGTTATCGTTTTA  647
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AACAATGTCCACATGGATATTGTTAATTTGACACACCAGTTATCGTTTTA  650

seq1  TCCAGTGAGAGGGTCACT-GGCAAGAGACTTTGGTCTGGTCCATGGCTGG  696
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCAGTGAGAGGGTCACTGGGCAAGAGACTTTGGTCTGGTCCATGGCTGG  700

seq1  AGCCCAGGAAGGCCTTCAAGCTGGAGGTTACACAGGACTATTTAGAGGAC  746
      ||||||||||||||||| ||||||||||||||||||  ||||||||||||
seq2  AGCCCAGGAAGGCCTTCTAGCTGGAGGTTACACAGGGTTATTTAGAGGAC  750

seq1  AGCCTATCCTGTTTTTTTAATCATGGAGGGCCTTGATGAACAGAGACAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCCTATCCTGTTTTTTTAATCATGGAGGGCCTTGATGAACAGAGACAG-  799

seq1  CTATAG-TTTTAGAGCTTTATTGTAGAAAGGCAGA  830
      | |||| ||||||||||||||||| ||||||||||
seq2  CAATAGTTTTTAGAGCTTTATTGTTGAAAGGCAGA  834

seq1: chr4_147019876_147020934
seq2: B6Ng01-288M08.g_67_1138 (reverse)

seq1  TTTTGTATACTGCA-TTGCC-ACACTTGTGGTT--CTGCCAATGCATAGG  46
      ||||||| |||||| ||||| ||||||||||||   ||| ||||||||||
seq2  TTTTGTACACTGCATTTGCCAACACTTGTGGTTTCTTGCAAATGCATAGG  50

seq1  AAAGCCCCATGGTAC-AAAACTCCATGGAGTTC-GGCT-GGCTGTATTCT  93
      ||||||||||||||| ||||||||||||||||| |||| |||||||||||
seq2  AAAGCCCCATGGTACAAAAACTCCATGGAGTTCGGGCTGGGCTGTATTCT  100

seq1  TAGTAAGATGTTTGGA-----TTTTTTTTAAAAGAACCAGCTTATAAGTG  138
      ||||||||||||||||     |||||||||||||||||||||||||||||
seq2  TAGTAAGATGTTTGGATTTTTTTTTTTTTAAAAGAACCAGCTTATAAGTG  150

seq1  TATGAAGGTGATTAT-AATTAAGTCTCTGAATTCTGAAAGAGATGGAG-T  186
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TATGAAGGTGATTATAAATTAAGTCTCTGAATTCTGAAAGAGATGGAGTT  200

seq1  TCCAGTTGATCTTGTCTTTTCCACTGTGTTTTATCAACTGAGTTGTTCTA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGATCTTGTCTTTTCCACTGTGTTTTATCAACTGAGTTGTTCTA  250

seq1  C-AAAGTGGTTTCA--TAAAAATAAACGAACACGGCAGGGCACCGAC-AA  282
      | ||||||||||||   |||||||||||||||| ||||||||||||| ||
seq2  CAAAAGTGGTTTCAATAAAAAATAAACGAACACTGCAGGGCACCGACAAA  300

seq1  CAAAAGGTGTTGCTTTTTACAAACTGACAATAAGTCTTCA-TTGCTAACG  331
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAAAGGTGTTGCTTTTTACAAACTGACAATAAGTCTTCATTTGCTAACG  350

seq1  AGCAGACTTGCACAACTCACTGTGTATAAAGAGGTCAAGCTGGTGCCTCC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTTGCACAACTCACTGTGTATAAAGAGGTCAAGCTGGTGCCTCC  400

seq1  AAGAACATTGGCTCTTACGTTCCACAGTCCTCGTTATGGGAAGGGCTTTG  431
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGAACATTGGCTCTTACGTTCCACAGTCCTCATTATGGGAAGGGCTTTG  450

seq1  CAAGCTACAAAAAGTGAAATACATACACAGAACCAACCAAAAAGACATTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACAAAAAGTGAAATACATACACAGAACCAACCAAAAAGACATTG  500

seq1  ATCTAAAATTTGTCCTTCCTCAAAAATATGCTAGGTCAATGATGTCTTGA  531
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  ATCTAAAATTTGTCCTTCCTCCAAAATATGCTAGGTCAATGATGTCATGA  550

seq1  ATTTATTGTGAATAACCAATCAATATCTAATTTGACTTAAATACCCAAAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTGAATAACCAATCAATATCTAATTTGACTTAAATACCCAAAG  600

seq1  CACCCTTGTGAAAAGTTTTACATATATATGTGTGTGTATGTGTGTTTGTG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTGAAAAGTTTTACATATATATGTGTGTGTATGTGTGTTTGTG  650

seq1  CATATATATGTGTGTGCATATATATGTATATATATATATATATGTATATA  681
      ||||||||||||||||||||||||||      ||||||||||||||| ||
seq2  CATATATATGTGTGTGCATATATATG------TATATATATATGTATGTA  694

seq1  TATATATATATATGCATATTGCATATGGATGTGAGTGTAGTGGGAGTACT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGCATATTGCATATGGATGTGAGTGTAGTGGGAGTACT  744

seq1  TGTGGACACACCAGTGTTATAAATAATGAGAAGGAGGTTTTTATACAGTT  781
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGGACACACCAGTGTTATAAATAATGAGAAGGAGGTTTTTATATAGTT  794

seq1  TAAACCGTAAGCCTTTCACTGAAGAAGTCTACCACCGATCATTTAAATTT  831
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAACCATAAGCCTTTCACTGAAGCAGTCTACCACCGATCATTTAAATTT  844

seq1  CAGACTATTCAAGCCTATGACCTCATGTGTAGCTTGCTCTTTACCTCTCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATTCAAGCCTATGACCTCATGTGTAGCTTGCTCTTTACCTCTCT  894

seq1  GCCCCTGTTCCCATTTATCTGTTCTCTTCTCTTTCTCCCACTTAATCTCT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTTCCCATTTATCTGTTCTCTTCTCTTTCTCCCACTTAATCTCT  944

seq1  TCCACCTGCTTTCTCTTCCCTACATCACTTTTTCCATCCAGAAATTCCAC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCTTTCTCTTCCCTACATCACTTTTTCCATCCAGAAATTCCAC  994

seq1  CCTCCAATTCTTATCCCAGGAATTGGATGTTAGGTTTTTTTCTTTCAAGC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATTCTTATCCCAGGAATTGGATGTTAGGTTTTTTTCTTTCAAGC  1044

seq1  AATCAGGTGTGAGACATCTCCAGAATTC  1059
      ||||||||||||||||||||||||||||
seq2  AATCAGGTGTGAGACATCTCCAGAATTC  1072