BAC Information

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BAC

Clone NameB6Ng01-289N07
Chromosome4 (Build37)
Map Location 17,116,610 - 17,220,068
singlet/doubletdoublet
Overlap geneLOC100040173
Upstream geneLOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289N07.bB6Ng01-289N07.g
ACCGA087123GA087124
length1,1711,102
definitionB6Ng01-289N07.b B6Ng01-289N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,116,610 - 17,117,784)(17,218,951 - 17,220,068)
sequence
gaattcagatactacagagtggaaaaaatactaatgtttaacccaaaaga
aagctaggaggaaaaatccaatctttgagtcagcaagctagaatcagaaa
taggccttagggcagtaacaggataattaattgaaaatctgctagaactc
ggccagcatgagatctgtgttcatgcaaaattgctgagattttcgccata
ggaaaagtttagcaaacagtgctctacagtaattgctgaatggaatttca
gtggagtagaatttcagtgagtggtgtagagattgtatttgtggtgtttt
ggtgaagaatgtgcctgatttttgcccttgtctgaagagtctttctgagt
ctagggtaaagagatttccttttaaacttttttaaaaatgtttttgactt
tttaaataatttttgtattgccatctttttattgagtattttatttattt
ccattccgattttcccctccagaaacaccatattccatcctccctccctc
tgcttctatgagggtgctcactaacctacacacctattcctgcctcccta
cactagggcattgagccttcccaggaccaagtgcctctcctctcattgat
tccccacaagggcatcctctgcaaagagattcatattaattgcattgata
aagaaaatcttttaaaaattccagacatagactttgttttctggttaagt
ctcatgaagatggttttaaacaagccttgcaagcttagtaagctgataca
gaggccacggagagtcattgtttattacgtgtttcccatggctttctcag
ccttctttcatataggatctaggaccaccagctcagggatggaaccattc
acagtggtgcgggatctccatatcaaatcacaaattaagaaaatgccgca
aaactacaaattcccgagacattttctccatgggtggtggcccccttctt
tcagataactctagctttgtcagctgaacataaaaactatcaagtgcatc
aactttatgtcatttgtaatattcaaggagaaaaaataccactggtgctt
tgtgagtttaaacttggaatataagtgtgaggaactaccttaaattatgg
tgctaccattcacgtgctggcattgagtaaaaggaaacctgagccattcg
gataaaacatcccattttaaa

gaattcaaaggcttaaggttgacttatatttgatcaagataattgcttac
agtttttcctaagtctataggcatataatttataaaaactgagtcatagg
aatgaattccacctaaattgccaaagtaagtcctaagtattgtaaaacta
agtgttatacaataagtcaaaacttaaaacatagtttcttctttaacact
gtgtgacttaccttctgggagtttcataactattattggttaccccaagc
aaggatataggaactaaaagacaaccaatattttgaccctgacctccaag
tgagctaatattcaggaaattaaagaagatgtctcaaatcattctccaac
tgatatgtaacccgttctctttatccagaaggtaggtcaacacacagtaa
aatatccatgatatttctaacaaaaattaaatgtctagcaagacttgaca
taaccaagtgtcataatcagtaaagggaaacaaagagaagaatggagatc
ctccaagtgcctaagaataatcccaatgaacctaattcaatagcaacagt
gttaatacttggcagcctacatgatatttaatacctagtaagaaacaact
tccaaagaatgaaatgatttatggtgctttgaatatacttggacaataag
gagtggtacttggaggagatatggccttgttgaaagaagtatggctttgg
aagtttggaggtctcctcctatgcttagactcctctcattatggaacaga
gcttccacctaaatgcctgaggatgccagtctccccaggttgacttcaaa
tcaagattcagaacactcagctgcttcttcagcaccaagtctgcccacat
gttgccatactatgccatactatagtgataatgaactaaattactgatct
tgtaaactagccccaattaaatgtcgtccatataagagtttccttgaata
atgttgtctctcaagcagtagaaaatcctaactacgacaacgattactat
acatttgaaagtagcaaaaaacggagatataaatatacttaaagtgatca
gcattatagccatgccataatccgagttagcatcaatgtccctcagcttg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17116610_17117784
seq2: B6Ng01-289N07.b_46_1216

seq1  GAATTCAGATACTACAGAGTGGAAAAAATACTAATGTTTAACCCAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACTACAGAGTGGAAAAAATACTAATGTTTAACCCAAAAGA  50

seq1  AAGCTAGGAGGAAAAATCCAATCTTTGAGTCAGCAAGCTAGAATCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGAGGAAAAATCCAATCTTTGAGTCAGCAAGCTAGAATCAGAAA  100

seq1  TAGGCCTTAGGGCAGTAACAGGATAATTAATTGAAAATCTGCTAGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTAGGGCAGTAACAGGATAATTAATTGAAAATCTGCTAGAACTC  150

seq1  GGCCAGCATGAGATCTGTGTTCATGCAAAATTGCTGAGATTTTCGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATGAGATCTGTGTTCATGCAAAATTGCTGAGATTTTCGCCATA  200

seq1  GGAAAAGTTTAGCAAACAGTGCTCTACAGTAATTGCTGAATGGAATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTTTAGCAAACAGTGCTCTACAGTAATTGCTGAATGGAATTTCA  250

seq1  GTGGAGTAGAATTTCAGTGAGTGGTGTAGAGATTGTATTTGTGGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTAGAATTTCAGTGAGTGGTGTAGAGATTGTATTTGTGGTGTTTT  300

seq1  GGTGAAGAATGTGCCTGATTTTTGCCCTTGTCTGAAGAGTCTTTCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAATGTGCCTGATTTTTGCCCTTGTCTGAAGAGTCTTTCTGAGT  350

seq1  CTAGGGTAAAGAGATTTCCTTTTAAACTTTTTTAAAAATGTTTTTGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTAAAGAGATTTCCTTTTAAACTTTTTTAAAAATGTTTTTGACTT  400

seq1  TTTAAATAATTTTTGTATTGCCATCTTTTTATTGAGTATTTTATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAATTTTTGTATTGCCATCTTTTTATTGAGTATTTTATTTATTT  450

seq1  CCATTCCGATTTTCCCCTCCAGAAACACCATATTCCATCCTCCCTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCGATTTTCCCCTCCAGAAACACCATATTCCATCCTCCCTCCCTC  500

seq1  TGCTTCTATGAGGGTGCTCACTAACCTACACACCTATTCCTGCCTCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATGAGGGTGCTCACTAACCTACACACCTATTCCTGCCTCCCTA  550

seq1  CACTAGGGCATTGAGCCTTCCCAGGACCAAGTGCCTCTCCTCTCATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGCATTGAGCCTTCCCAGGACCAAGTGCCTCTCCTCTCATTGAT  600

seq1  TCCCCACAAGGGCATCCTCTGCAAAGAGATTCATATTAATTGCATTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAAGGGCATCCTCTGCAAAGAGATTCATATTAATTGCATTGATA  650

seq1  AAGAAAATCTTTTAAAAATTCCAGACATAGACTTTGTTTTCTGGTTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCTTTTAAAAATTCCAGACATAGACTTTGTTTTCTGGTTAAGT  700

seq1  CTCATGAAGATGGTTTTAAACAAGCCTTGCAAGCTTAGTAAGCTGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAGATGGTTTTAAACAAGCCTTGCAAGCTTAGTAAGCTGATACA  750

seq1  GAGGCCACGGAGAGTCATTGTTTATTACGTGTTTCCCATGGCTTTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACGGAGAGTCATTGTTTATTACGTGTTTCCCATGGCTTTCTCAG  800

seq1  CCTTCTTTCATATAGGATCTAGGACCACCAGCTCAGGGATGGAACCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCATATAGGATCTAGGACCACCAGCTCAGGGATGGAACCATTC  850

seq1  ACAGTGGTGCGGGATCTCCATATCAAATCACAAATTAAGAAAATGCCGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTGCGGGATCTCCATATCAAATCACAAATTAAGAAAATGCCGCA  900

seq1  AAACTACAAATTCCGGAGACATTTTCTCCATGG--TGTGG-CCCCTTCTT  947
      |||||||||||||| ||||||||||||||||||   |||| |||||||||
seq2  AAACTACAAATTCCCGAGACATTTTCTCCATGGGTGGTGGCCCCCTTCTT  950

seq1  TCAGATAACTCTAGCTTTGTCAAGCTG-ACAT-AAAACTATCAAGTGCAT  995
      ||||||||||||||||||||| ||||| |||| |||||||||||||||||
seq2  TCAGATAACTCTAGCTTTGTC-AGCTGAACATAAAAACTATCAAGTGCAT  999

seq1  CAACTTTATGTCATTTGTAATATCCAAGGGAGAAAAATAACCACTGGGTG  1045
      ||||||||||||||||||||||| ||| |||||||||  |||||| ||||
seq2  CAACTTTATGTCATTTGTAATATTCAA-GGAGAAAAAATACCACT-GGTG  1047

seq1  CTTTTGTGAGGTTTTAAACTTTGGATAATTAAGGTGTGAGGAACTACCTT  1095
      | ||||||||  ||||||||| | |||  ||| |||||||||||||||||
seq2  C-TTTGTGAG--TTTAAACTTGGAATA--TAA-GTGTGAGGAACTACCTT  1091

seq1  AAATATGGGTGGTACCATTCCACGTGCTTGCATTGAGTAAAA-GAAACTG  1144
      ||||   |||| ||||||| |||||||| ||||||||||||| |||||  
seq2  AAATTATGGTGCTACCATT-CACGTGCTGGCATTGAGTAAAAGGAAACCT  1140

seq1  AAGCCATTTTGGATAAAAC-TTCCATTTTAAA  1175
       ||||| || ||||||||| | ||||||||||
seq2  GAGCCA-TTCGGATAAAACATCCCATTTTAAA  1171


seq1: chr4_17218951_17220068
seq2: B6Ng01-289N07.g_67_1168 (reverse)

seq1  TTCAAGCTGA-GGACATTTTAATGCT-ACTCTGAATTTAATGGCATGGCT  48
      |||||||||| |||||  || ||||| |||| ||   | |||||||||| 
seq2  TTCAAGCTGAGGGACA--TTGATGCTAACTCGGA---TTATGGCATGGC-  44

seq1  TATAATGCTTGAATCACTTTTAAGTTATATTTAATATCTTCGGTTTTTTT  98
      |||||||||   ||||| |||||| ||||||| |||||| ||  ||||||
seq2  TATAATGCT--GATCAC-TTTAAG-TATATTT-ATATCTCCG--TTTTTT  87

seq1  GCTTACTTTTCAAATTGTATTAGTAATCGTTGTCGTAGTTAGGA-TTTCT  147
      || ||| ||||||| |||| |||||||||||||||||||||||| |||||
seq2  GC-TAC-TTTCAAA-TGTA-TAGTAATCGTTGTCGTAGTTAGGATTTTCT  133

seq1  ACTGCTTTGAAGAGACAACATTA-TCAAGGAAACTCTTATATGGGACGAC  196
      |||||||   ||||||||||||| |||||||||||||||||| |||||||
seq2  ACTGCTT--GAGAGACAACATTATTCAAGGAAACTCTTATAT-GGACGAC  180

seq1  ATTTAATTGGGGCTAGTTTACAAGATCAGTAATTTAGTTCATTATCACTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGGGGCTAGTTTACAAGATCAGTAATTTAGTTCATTATCACTA  230

seq1  TAGTATGGCATAGTATGGCAACATGTGGGCAGACTTGGTGCTGAAGAAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGGCATAGTATGGCAACATGTGGGCAGACTTGGTGCTGAAGAAGC  280

seq1  AGCTGAGTGTTCTGAATCTTGATTTGAAGTCAACCTGGGGAGACTGGCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGTTCTGAATCTTGATTTGAAGTCAACCTGGGGAGACTGGCAT  330

seq1  CCTCAGGCATTTAGGTGGAAGCTCTGTTCCATAATGAGAGGAGTCTAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCATTTAGGTGGAAGCTCTGTTCCATAATGAGAGGAGTCTAAGC  380

seq1  ATAGGAGGAGACCTCCAAACTTCCAAAGCCATACTTCTTTCAACAAGGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGAGACCTCCAAACTTCCAAAGCCATACTTCTTTCAACAAGGCC  430

seq1  ATATCTCCTCCAAGTACCACTCCTTATTGTCCAAGTATATTCAAAGCACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCTCCAAGTACCACTCCTTATTGTCCAAGTATATTCAAAGCACC  480

seq1  ATAAATCATTTCATTCTTTGGAAGTTGTTTCTTACTAGGTATTAAATATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATTTCATTCTTTGGAAGTTGTTTCTTACTAGGTATTAAATATC  530

seq1  ATGTAGGCTGCCAAGTATTAACACTGTTGCTATTGAATTAGGTTCATTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCTGCCAAGTATTAACACTGTTGCTATTGAATTAGGTTCATTGG  580

seq1  GATTATTCTTAGGCACTTGGAGGATCTCCATTCTTCTCTTTGTTTCCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCTTAGGCACTTGGAGGATCTCCATTCTTCTCTTTGTTTCCCTT  630

seq1  TACTGATTATGACACTTGGTTATGTCAAGTCTTGCTAGACATTTAATTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTATGACACTTGGTTATGTCAAGTCTTGCTAGACATTTAATTTT  680

seq1  TGTTAGAAATATCATGGATATTTTACTGTGTGTTGACCTACCTTCTGGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAATATCATGGATATTTTACTGTGTGTTGACCTACCTTCTGGAT  730

seq1  AAAGAGAACGGGTTACATATCAGTTGGAGAATGATTTGAGACATCTTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACGGGTTACATATCAGTTGGAGAATGATTTGAGACATCTTCTT  780

seq1  TAATTTCCTGAATATTAGCTCACTTGGAGGTCAGGGTCAAAATATTGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCTGAATATTAGCTCACTTGGAGGTCAGGGTCAAAATATTGGTT  830

seq1  GTCTTTTAGTTCCTATATCCTTGCTTGGGGTAACCAATAATAGTTATGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAGTTCCTATATCCTTGCTTGGGGTAACCAATAATAGTTATGAA  880

seq1  ACTCCCAGAAGGTAAGTCACACAGTGTTAAAGAAGAAACTATGTTTTAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGAAGGTAAGTCACACAGTGTTAAAGAAGAAACTATGTTTTAAG  930

seq1  TTTTGACTTATTGTATAACACTTAGTTTTACAATACTTAGGACTTACTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTATTGTATAACACTTAGTTTTACAATACTTAGGACTTACTTT  980

seq1  GGCAATTTAGGTGGAATTCATTCCTATGACTCAGTTTTTATAAATTATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTAGGTGGAATTCATTCCTATGACTCAGTTTTTATAAATTATAT  1030

seq1  GCCTATAGACTTAGGAAAAACTGTAAGCAATTATCTTGATCAAATATAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGACTTAGGAAAAACTGTAAGCAATTATCTTGATCAAATATAAG  1080

seq1  TCAACCTTAAGCCTTTGAATTC  1118
      ||||||||||||||||||||||
seq2  TCAACCTTAAGCCTTTGAATTC  1102


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