BAC Information

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BAC

Clone NameB6Ng01-291L18
Chromosome4 (Build37)
Map Location 25,542,222 - 25,669,743
singlet/doubletdoublet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L18.bB6Ng01-291L18.g
ACCGA088547GA088548
length1,1601,102
definitionB6Ng01-291L18.b B6Ng01-291L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,668,574 - 25,669,743)(25,542,222 - 25,543,335)
sequence
gaattccactttgagactaaggattactgaaaagaaaaaggaatgttatt
caggttttctgttcacattgatgtcctagaaatggtcaaaaacctggaaa
aggcaggaaacccaaactcttccaatcatgtctttgatattttgcatctg
ttataaaatgatgaggcttctttcctcataatgaataatttcttaactgt
ctatcatctacctatctctctctatatatctctctatcatatttttgata
ccatatttctctgtttagccctggaactttctctgtagatcagtatggtc
tcagactcatatatatttgcctgcttctgccttcccaatgctgagattta
agacataatccatccttaccaagcctgaagtctgttttttgacaaataaa
ggtattggctttctttgttgcaaaagcagatttgacttatgaaaatattc
aagtgacattatttttattttattaattttaactaatgtaatggttatac
ttgaaaagaattaattgaacagatagtaaatacactgtgaaatttctgta
atataaatgtgtagctggaactaataataactttaaggttggtttcaata
acttagaggtcgaagtgatagacttactcagtccagagcatcactagctg
attctttgtaatctcagctctacaaagggatttgtcagcaggtcggggag
gaaggcctgcagaattctaatatgcatcccatgagctaagatacataaga
ggataacatcgcttctctcctccttcatgtgttacagtaggtttaccaag
tatttatagcctcaaagagcgtgctgctaaagcatctttttttcttcctc
ttcaatgcaccactaaagaactggctcaccagctgtgctgctcacagcct
ctcacccgcctatctatttactataagtaatgtgcaagtggtctgaggga
ggctgggtctcagggcactcaatttctcggtggataaacagcccatgaaa
ttcagaaataagaaccacaggatctccattttctttctttagagctaaac
taaaaaaaaaggactgctgcatgtttgtacgtgcatccaatttgattttt
ctaaattgatgtcagattcaggataaaagaagaactttggattggaatcc
agtgaacaag

gaattcctgagtttgcatcaataaatagttttagattattatagtaagaa
tacatatagtataaaaaatgtgaattgttttagaatggggttcaatatat
ggttgttttctgtagataactaagtgtaagaaactgtatgttgcaagaga
cctaagaggaagaaaaatataaaggagaaagattcgttaattgaacactt
actatattgtaagtttcagtaaagaacctgttctttattgttctagagaa
aagaaagggaattttatttggagtactaactttcaaaaatatttttggat
agacaagggaactcaaatatatgcacatatcaacttaggcctcatattat
aaagcagttgtgctgaaggaattcttactaacaaggttatccagagaggt
caagtgagtttctcaaggcttcaatttgttgcaatgatagtctagggtag
acttactcatatttctagttcaacagtgtgtctaccatttagactctatt
aactgcttataaatatggatggattgaatattaattacacaggaccatac
tttggatagtagcagagcttagccattttcacagtgccataaagactcca
gaagagagatgcccacagcaaaaaccacttgattgagatgatgtttgcag
tatgttcactatacaacaaatcaaattggcaagaatgaagggtaaatctg
tttctctccccacagtttggtaatacacatttgcctatcctgatgcttca
tttttcaattctctttatgtcctaatttcatctttattaggttaacagtt
ggtgaatggttaatattaaaatagaattctaagaagtttcaaatctagtt
taatctttcataatatttatttcttttgttttttttttaaacatatgata
agaaggacttaacctgtctgttctctgaatctagaagcaatttgaacaga
gagattatccccatttcgaatgaagaactgttatttcgattacattaaat
gtatcttcatgtcactaatttcatgaggtattatttactaggcacaatat
acccctctgtatgaacaatgcttatcttagcttctgaatcctcttaatat
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25668574_25669743
seq2: B6Ng01-291L18.b_48_1207 (reverse)

seq1  CTTGTTCACTTGGAATCCAAATCCAAAAAGTCTTCTTATATTCCCTGAAA  50
      ||||||||| |||| ||| ||||| |||  ||||||| |||  |||| ||
seq2  CTTGTTCAC-TGGATTCC-AATCC-AAAGTTCTTCTTTTAT--CCTG-AA  44

seq1  TCTTGACATCATTTTAG-AAAATCAAATTTGGATTGGCAACGTACAAACA  99
      || |||||||| ||||| ||||||||| ||||||  || |||||||||||
seq2  TC-TGACATCAATTTAGAAAAATCAAA-TTGGAT--GC-ACGTACAAACA  89

seq1  TGCAAGCAGT-CTTTTTTTTTAGTTTTAGCTCTTAAAGAAAGAAAATGGA  148
      ||| |||||| |||||||||||| |||||||| |||||||||||||||||
seq2  TGC-AGCAGTCCTTTTTTTTTAG-TTTAGCTC-TAAAGAAAGAAAATGGA  136

seq1  GATCCTGTGGTTC-TATTTCTGAATTTCATGGGCTG-TTATCCACCGAGA  196
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  GATCCTGTGGTTCTTATTTCTGAATTTCATGGGCTGTTTATCCACCGAGA  186

seq1  AATTGAGTGCCCTGAGACCCAGCCTCCCTCAGACCACTTGCACATTACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTGCCCTGAGACCCAGCCTCCCTCAGACCACTTGCACATTACTT  236

seq1  ATAGTAAATAGATAGGCGGGTGAGAGGCTGTGAGCAGCACAGCTGGTGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAATAGATAGGCGGGTGAGAGGCTGTGAGCAGCACAGCTGGTGAG  286

seq1  CCAGTTCTTTAGTGGTGCATTGAAGAGGAAGAAAAAAAGATGCTTTAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTTAGTGGTGCATTGAAGAGGAAGAAAAAAAGATGCTTTAGCA  336

seq1  GCACGCTCTTTGAGGCTATAAATACTTGGTAAACCTACTGTAACACATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTCTTTGAGGCTATAAATACTTGGTAAACCTACTGTAACACATGA  386

seq1  AGGAGGAGAGAAGCGATGTTATCCTCTTATGTATCTTAGCTCATGGGATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGAAGCGATGTTATCCTCTTATGTATCTTAGCTCATGGGATG  436

seq1  CATATTAGAATTCTGCAGGCCTTCCTCCCCGACCTGCTGACAAATCCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGAATTCTGCAGGCCTTCCTCCCCGACCTGCTGACAAATCCCTT  486

seq1  TGTAGAGCTGAGATTACAAAGAATCAGCTAGTGATGCTCTGGACTGAGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCTGAGATTACAAAGAATCAGCTAGTGATGCTCTGGACTGAGTA  536

seq1  AGTCTATCACTTCGACCTCTAAGTTATTGAAACCAACCTTAAAGTTATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCACTTCGACCTCTAAGTTATTGAAACCAACCTTAAAGTTATTA  586

seq1  TTAGTTCCAGCTACACATTTATATTACAGAAATTTCACAGTGTATTTACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCAGCTACACATTTATATTACAGAAATTTCACAGTGTATTTACT  636

seq1  ATCTGTTCAATTAATTCTTTTCAAGTATAACCATTACATTAGTTAAAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCAATTAATTCTTTTCAAGTATAACCATTACATTAGTTAAAATT  686

seq1  AATAAAATAAAAATAATGTCACTTGAATATTTTCATAAGTCAAATCTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAAATAATGTCACTTGAATATTTTCATAAGTCAAATCTGCT  736

seq1  TTTGCAACAAAGAAAGCCAATACCTTTATTTGTCAAAAAACAGACTTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACAAAGAAAGCCAATACCTTTATTTGTCAAAAAACAGACTTCAG  786

seq1  GCTTGGTAAGGATGGATTATGTCTTAAATCTCAGCATTGGGAAGGCAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTAAGGATGGATTATGTCTTAAATCTCAGCATTGGGAAGGCAGAA  836

seq1  GCAGGCAAATATATATGAGTCTGAGACCATACTGATCTACAGAGAAAGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAATATATATGAGTCTGAGACCATACTGATCTACAGAGAAAGTT  886

seq1  CCAGGGCTAAACAGAGAAATATGGTATCAAAAATATGATAGAGAGATATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTAAACAGAGAAATATGGTATCAAAAATATGATAGAGAGATATA  936

seq1  TAGAGAGAGATAGGTAGATGATAGACAGTTAAGAAATTATTCATTATGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGATAGGTAGATGATAGACAGTTAAGAAATTATTCATTATGAG  986

seq1  GAAAGAAGCCTCATCATTTTATAACAGATGCAAAATATCAAAGACATGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCCTCATCATTTTATAACAGATGCAAAATATCAAAGACATGAT  1036

seq1  TGGAAGAGTTTGGGTTTCCTGCCTTTTCCAGGTTTTTGACCATTTCTAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTTTGGGTTTCCTGCCTTTTCCAGGTTTTTGACCATTTCTAGG  1086

seq1  ACATCAATGTGAACAGAAAACCTGAATAACATTCCTTTTTCTTTTCAGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATGTGAACAGAAAACCTGAATAACATTCCTTTTTCTTTTCAGTA  1136

seq1  ATCCTTAGTCTCAAAGTGGAATTC  1170
      ||||||||||||||||||||||||
seq2  ATCCTTAGTCTCAAAGTGGAATTC  1160


seq1: chr4_25542222_25543335
seq2: B6Ng01-291L18.g_67_1168

seq1  GAATTCCTGAGTTTGCATCAATAAATAGTTTTAGATTATTATAGTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTTTGCATCAATAAATAGTTTTAGATTATTATAGTAAGAA  50

seq1  TACATATAGTATAAAAAATGTGAATTGTTTTAGAATGGGGTTCAATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGTATAAAAAATGTGAATTGTTTTAGAATGGGGTTCAATATAT  100

seq1  GGTTGTTTTCTGTAGATAACTAAGTGTAAGAAACTGTATGTTGCAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTCTGTAGATAACTAAGTGTAAGAAACTGTATGTTGCAAGAGA  150

seq1  CCTAAGAGGAAGAAAAATATAAAGGAGAAAGATTCGTTAATTGAACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGGAAGAAAAATATAAAGGAGAAAGATTCGTTAATTGAACACTT  200

seq1  ACTATATTGTAAGTTTCAGTAAAGAACCTGTTCTTTATTGTTCTAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTGTAAGTTTCAGTAAAGAACCTGTTCTTTATTGTTCTAGAGAA  250

seq1  AAGAAAGGGAATTTTATTTGGAGTACTAACTTTCAAAAATATTTTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGAATTTTATTTGGAGTACTAACTTTCAAAAATATTTTTGGAT  300

seq1  AGACAAGGGAACTCAAATATATGCACATATCAACTTAGGCCTCATATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGGAACTCAAATATATGCACATATCAACTTAGGCCTCATATTAT  350

seq1  AAAGCAGTTGTGCTGAAGGAATTCTTACTAACAAGGTTATCCAGAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTTGTGCTGAAGGAATTCTTACTAACAAGGTTATCCAGAGAGGT  400

seq1  CAAGTGAGTTTCTCAAGGCTTCAATTTGTTGCAATGATAGTCTAGGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGTTTCTCAAGGCTTCAATTTGTTGCAATGATAGTCTAGGGTAG  450

seq1  ACTTACTCATATTTCTAGTTCAACAGTGTGTCTACCATTTAGACTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCATATTTCTAGTTCAACAGTGTGTCTACCATTTAGACTCTATT  500

seq1  AACTGCTTATAAATATGGATGGATTGAATATTAATTACACAGGACCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTATAAATATGGATGGATTGAATATTAATTACACAGGACCATAC  550

seq1  TTTGGATAGTAGCAGAGCTTAGCCATTTTCACAGTGCCATAAAGACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATAGTAGCAGAGCTTAGCCATTTTCACAGTGCCATAAAGACTCCA  600

seq1  GAAGAGAGATGCCCACAGCAAAAACCACTTGATTGAGATGATGTTTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGATGCCCACAGCAAAAACCACTTGATTGAGATGATGTTTGCAG  650

seq1  TATGTTCACTATACAACAAATCAAATTGGCAAGAATGAAGGGTAAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACTATACAACAAATCAAATTGGCAAGAATGAAGGGTAAATCTG  700

seq1  TTTCTCTCCCCACAGTTTGGTAATACACATTTGCCTATCCTGATGCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCCCACAGTTTGGTAATACACATTTGCCTATCCTGATGCTTCA  750

seq1  TTTTTCAATTCTCTTTATGTCCTAATTTCATCTTTATTAGGTTAACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATTCTCTTTATGTCCTAATTTCATCTTTATTAGGTTAACAGTT  800

seq1  GGTGAATGGTTAATATTAAAATAGAATTCTAAGAAGTTTCAAATCTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGGTTAATATTAAAATAGAATTCTAAGAAGTTTCAAATCTAGTT  850

seq1  TAATCTTTCATAATATTTATTTCTTTTG-TTTTTTTTTAAACATATGATA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATCTTTCATAATATTTATTTCTTTTGTTTTTTTTTTAAACATATGATA  900

seq1  AGAAGGACTTAACCTGTCTGTTCTCTGAATCTAGAAGCAATTTGAACAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAGGACTTAACCTGTCTGTTCTCTGAATCTAGAAGCAATTTGAACAG-  949

seq1  AGAGATTATCCCCATTTCGAATGAAGAAACTGTTATTTCGATTACATTAA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGATTATCCCCATTTCGAATGAAG-AACTGTTATTTCGATTACATTAA  998

seq1  ATGTATCTTTCATGTCCACTAATTTCATTGAGGTAATTATTTACTAGGCA  1049
      ||||||| ||||||| ||||||||||| |||||| |||||||||||||||
seq2  ATGTATC-TTCATGT-CACTAATTTCA-TGAGGT-ATTATTTACTAGGCA  1044

seq1  ACCATTAATAACCCCTCCTGTATGAACAAATGCTTATCCTTTAGCTTCTG  1099
        || ||   |||||| |||||||||| ||||||||||  ||||||||||
seq2  --CAATA--TACCCCT-CTGTATGAAC-AATGCTTATC--TTAGCTTCTG  1086

seq1  AAATCTCTT-ATATCT  1114
      ||  ||||| ||||||
seq2  AATCCTCTTAATATCT  1102


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