BAC Information

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BAC

Clone NameB6Ng01-293O23
Chromosome4 (Build37)
Map Location 28,660,150 - 28,661,282
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O23.bB6Ng01-293O23.g
ACCGA090194GA090195
length1,1831,115
definitionB6Ng01-293O23.b B6Ng01-293O23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttcttggggctgtctttttttaggtttgtttcttgctttttc
tagggtgtagttttcgtccttgtgttggtgttttcccgttattatccttt
gaaagacaggattagtgtaaagatattgtgtgaatttggttttgtcatga
aatactttggtttctccatctatggtaattgagagttttgctggtatagt
agcctgggctgccatttgtgttttcttagggtctgtataacatctgtcca
ataccttctggctttcatagtctctggtgagaagtctggtgtaattcgaa
taggcctacctttataggttacttgacattttccccttattgatttaata
ttctatatttatttagctcatttgttgttctgtttattatgtatctggag
gaatttattttctggtccagtctatttggagttctgtaggcttcttgcat
gttcatgggcatctctttctttaggtttgggaagttttcttctataattt
tgttgaaggtatttgctggccctttaagttgaaaatcttcattctcatct
cattgtatcctgagtttcctggatgttttgagttaggatctttttgcatt
ttccattttctttgattgttgtgcccatgttctctatgaaatcttctaca
tctgagattctctcttccatctcttgtattctgttgctgatgctcaaatc
tatggttccagatttctttcgtagggtttctatctccagagttgtctcac
tttgggctttctttattgtttctacttcccttttcacgtcttggatggtt
ttgttcaatcccatcacctatttggttttgttttcctgtaattctttaag
ggatttttgtgtttcctctttaaggacttctacctgtttaatagtgttct
cctgtatttctttaaggagatattgatgccctttcttaaagtcctctatc
agcatcatgagatatgattttaactctgaatctgctttttgggtgttgtt
ggggtatccaggaccggctgagtggagtcctgggattctgatgaatgtga
aggtcttgctttctgtagtaacaatctatatattgccctacccaatctgt
aatctctggagttagctgttaagtgtccttctctggagcctgtcaacgct
agatttccgttagacccgatcgtgcagctcaac
gaattctcctagctcattaaaatcctccaatgattcttaaagtatttgtt
aaaaaaaaaaaaaaaacaaaccatccacaaacactactgaattcgttttc
cggggccaggattatttcggctgctagtcaaatcatttttatgtcacaaa
tgttaaaaatgtcttattggtgtgggggtgttatatcttactaaatattt
aaaaaaacatgagctgcttaaaaaagtattggaaactttaccttttaaca
aagtccatattgaacattattaatttctaacacttgctatgctggcgatt
tatttcactgatcttaacttgctctattttctacctaaagttttcagcta
tgtgctaaaaaagagtgaagaatggcagcagttaacagaggcctgtgcaa
actgttgtttctcctgagatgtagtccacacacctactgtgcactttgga
gtgcgtcttcagtctttctttgaaagaactgtaaggaagcacacatcggg
aatgggaatgaggccattcgcaccatctggtcctaatttttttttttttt
ttttttttgagctgaagactctgtattattaaaccactgtgtaaaatgta
aaagtgacattagaaatctgagtgaaatccaaaaaggttcaaagaactta
aggttatttttaaagatatggatagcaacattaaaatataaggaaaataa
aggcatgcctttgttctcaggtaaccttgaacttcattttgccaatttct
cacagactgaaagttcttttatatgtatagttggacaagttgaatatgcg
tttttataggcatgtacaattctgtgccatttcctttatccttatttcat
ctgataaaattttaatatgccctctagtttccaaattacaaaactttaaa
gctcacatgatctcatgacagaattttagtggctattccaaaatctcaca
ataagggtgtttgcctacaaatgttaaggacttgtcttattccacaggag
tgcatctacaagtttattcttcctctctctgcttttaaccaacatgactt
tcacaatcttcttaaagaatgatgtcctggtgtaagaactaagtctagac
atgatgtatcaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28660150_28661282
seq2: B6Ng01-293O23.g_65_1179 (reverse)

seq1  CCATTGATACATCTATGTCTAGGACTAGTTCTTA-ACACAGACATCATTC  49
      | ||||||||||| ||||||||   ||||||||| ||   ||||||||||
seq2  CAATTGATACATC-ATGTCTAGACTTAGTTCTTACACCAGGACATCATTC  49

seq1  TTTTAAAGAAGATTGTGGAAGTTCAATGTGTGTTAAAAAGTGGGGGGGGG  99
      |||  |||||||||||| ||||   ||||  |||||||      |  | |
seq2  TTT--AAGAAGATTGTGAAAGT--CATGTTGGTTAAAA------GCAGAG  89

seq1  GGGGGGAGAATAAACTTTGTAGATTGCACTCCCTGTGGAAATAAGACAAG  149
       | || ||||||||| ||||||| |||||| ||||||| |||||||||||
seq2  AGAGGAAGAATAAAC-TTGTAGA-TGCACT-CCTGTGG-AATAAGACAAG  135

seq1  TCCTTTAACATTTGTAAGGCAAACACCCCTTATTGTGAGATTTTGGAATA  199
      ||| ||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TCC-TTAACATTTGT-AGGCAAACA-CCCTTATTGTGAGATTTTGGAATA  182

seq1  GCCACTAAAATTCTGTCATGAGATCATGTGAGCTTTAAAGTTTTGTAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAAAATTCTGTCATGAGATCATGTGAGCTTTAAAGTTTTGTAATT  232

seq1  TGGAAACTAGAGGGCATATTAAAATTTTTATCAGATGAAATAAGGATAAA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGAAACTAGAGGGCATATTAAAA-TTTTATCAGATGAAATAAGGATAAA  281

seq1  GGAAATGGCACAGAATTGTACATGCCTATAAAAACGCATATTCAACTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCACAGAATTGTACATGCCTATAAAAACGCATATTCAACTTGT  331

seq1  CCAACTATACATATAAAAGAACTTTCAGTCTGTGAGAAATTGGCAAAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTATACATATAAAAGAACTTTCAGTCTGTGAGAAATTGGCAAAATG  381

seq1  AAGTTCAAGGTTACCTGAGAACAAAGGCATGCCTTTATTTTCCTTATATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGGTTACCTGAGAACAAAGGCATGCCTTTATTTTCCTTATATT  431

seq1  TTAATGTTGCTATCCATATCTTTAAAAATAACCTTAAGTTCTTTGAACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTGCTATCCATATCTTTAAAAATAACCTTAAGTTCTTTGAACCT  481

seq1  TTTTGGATTTCACTCAGATTTCTAATGTCACTTTTACATTTTACACAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTTCACTCAGATTTCTAATGTCACTTTTACATTTTACACAGTG  531

seq1  GTTTAATAATACAGAGTCTTCAGCTCAAAAAAAAAAAAAAAAAAAAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAATACAGAGTCTTCAGCTCAAAAAAAAAAAAAAAAAAAAAATT  581

seq1  AGGACCAGATGGTGCGAATGGCCTCATTCCCATTCCCGATGTGTGCTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGATGGTGCGAATGGCCTCATTCCCATTCCCGATGTGTGCTTCC  631

seq1  TTACAGTTCTTTCAAAGAAAGACTGAAGACGCACTCCAAAGTGCACAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTCTTTCAAAGAAAGACTGAAGACGCACTCCAAAGTGCACAGTA  681

seq1  GGTGTGTGGACTACATCTCAGGAGAAACAACAGTTTGCACAGGCCTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGGACTACATCTCAGGAGAAACAACAGTTTGCACAGGCCTCTGT  731

seq1  TAACTGCTGCCATTCTTCACTCTTTTTTAGCACATAGCTGAAAACTTTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTGCCATTCTTCACTCTTTTTTAGCACATAGCTGAAAACTTTAG  781

seq1  GTAGAAAATAGAGCAAGTTAAGATCAGTGAAATAAATCGCCAGCATAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATAGAGCAAGTTAAGATCAGTGAAATAAATCGCCAGCATAGCA  831

seq1  AGTGTTAGAAATTAATAATGTTCAATATGGACTTTGTTAAAAGGTAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGAAATTAATAATGTTCAATATGGACTTTGTTAAAAGGTAAAGT  881

seq1  TTCCAATACTTTTTTAAGCAGCTCATGTTTTTTTAAATATTTAGTAAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATACTTTTTTAAGCAGCTCATGTTTTTTTAAATATTTAGTAAGAT  931

seq1  ATAACACCCCCACACCAATAAGACATTTTTAACATTTGTGACATAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACCCCCACACCAATAAGACATTTTTAACATTTGTGACATAAAAAT  981

seq1  GATTTGACTAGCAGCCGAAATAATCCTGGCCCCGGAAAACGAATTCAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACTAGCAGCCGAAATAATCCTGGCCCCGGAAAACGAATTCAGTA  1031

seq1  GTGTTTGTGGATGGTTTGTTTTTTTTTTTTTTTTAACAAATACTTTAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGGATGGTTTGTTTTTTTTTTTTTTTTAACAAATACTTTAAGA  1081

seq1  ATCATTGGAGGATTTTAATGAGCTAGGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  ATCATTGGAGGATTTTAATGAGCTAGGAGAATTC  1115