BAC Information

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BAC

Clone NameB6Ng01-296J21
Chromosome4 (Build37)17 (Build37)
Map Location 142,851,431 - 142,852,45359,972,859 - 59,973,033
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665983, LOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776
Downstream genePdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296J21.bB6Ng01-296J21.g
ACCGA092181GA092182
length1,020665
definitionB6Ng01-296J21.b B6Ng01-296J21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,851,431 - 142,852,453)(59,972,859 - 59,973,033)
sequence
gaattcacatgtgtgggctccggagctgttgtttcaggctacctatctga
tgtgtagcctttttgttgtagtggctgtagaaaattaatatgggagtgta
cgccccatctggggaaaggatatgacacaggtaagtgcacagaaagccac
aagtgcacagtagtgacagtggctgtgaacaagcagggtgtgttgatgcc
ttatctggaggtggcggtggagaggactttgagggagtgatactgagtgg
cagcagagcgagaggcttaagagctgaggcgcctgcaatcagatctcagc
aggtcaagcagctaggagtgtcaatggccacaagcctagagatggacact
gcaggatacagccatgcgtactgtctacttgtgccaggtgtggtctccta
aggtcaactgtgaccgcatttctattcggcagacaggaagtgtgctatac
acacaccatgttctctcttcttactcttcccttagcaggatccattggca
gcctagtgagggcaggctccaggcaacagacaacaggagtctgaggacag
gaggggacagagaggaggggaggcagcaaggaagctcttcttggctcctc
cagagccaccgctgcaggtgactgccatgttactgtctatgatcctggtc
tgctttgttttccctgcctcttaagggattaaaagtcaggaaaaacctta
agcacagaaggcaacaaactattaaaagtgaggacgcgctcctgcacacc
cacacagatggacagacttcccacatgtggacaaatgattcagaatccaa
agccaagacgctctggagcagcagttctcaacctgtgggtcgcgaccccc
acagggatctcatatcacatgtcctgcatatcagatatttacattacgat
tcataatagtagaaaaattacattacgaagtagcccatgaaatatttgtg
gtctgggggaaaggggagttcactacaacatgaggaattgtaattaaagg
gttgcagatagaaggtcaga
gaattccaggaagtctttaatttctttatttcttcccagaccaagttatc
attgggtacagagttgttcagtttccaaatgtatttgggctttctgctgt
ttgtgttgttattgaaggtcggccttaatccgtggtgatctgataagatg
catgggattatttcaatcttcttgtatctcctaaggcttgttttgtgatg
aattatatggtcagttttggagaaagtaccatgagatcctgagaaaaagg
tgtattcttttgttttagggtgaaatatctgtgtgtttgtgtatgtatgt
atgtatatatatatatatatatatatatatatatatatatacacacacac
atatatatatatatataaaaaaaaaaaacacatttctctctctctctctc
tcttttctctctctctctctctctctctctctaaaaaacaagcgagcgga
gagacagagagagagagagatagacatatatatatatatatatatacaca
tagagagagagagacagagacacacacacacaagaaagagcacacacata
tacacacacacacacactctctctctctatctctctctctgtgtggatat
atagagatagaacacacactgagagtgtgcgcgtgtgtctatatatatat
atatatatatataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142851431_142852453
seq2: B6Ng01-296J21.b_49_1064

seq1  GAATTCACATGTGTGGGCTCCGGAGCTGTTGTTTCAGGCTACCTATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTGTGGGCTCCGGAGCTGTTGTTTCAGGCTACCTATCTGA  50

seq1  TGTGTAGCCTTTTTGTTGTAGTGGCTGTAGAAAATTAATATGGGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCTTTTTGTTGTAGTGGCTGTAGAAAATTAATATGGGAGTGTA  100

seq1  CGCCCCATCTGGGGAAAGGATATGACACAGGTAAGTGCACAGAAAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCATCTGGGGAAAGGATATGACACAGGTAAGTGCACAGAAAGCCAC  150

seq1  AAGTGCACAGTAGTGACAGTGGCTGTGAACAAGCAGGGTGTGTTGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAGTAGTGACAGTGGCTGTGAACAAGCAGGGTGTGTTGATGCC  200

seq1  TTATCTGGAGGTGGCGGTGGAGAGGACTTTGAGGGAGTGATACTGAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGAGGTGGCGGTGGAGAGGACTTTGAGGGAGTGATACTGAGTGG  250

seq1  CAGCAGAGCGAGAGGCTTAAGAGCTGAGGCGCCTGCAATCAGATCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGCGAGAGGCTTAAGAGCTGAGGCGCCTGCAATCAGATCTCAGC  300

seq1  AGGTCAAGCAGCTAGGAGTGTCAATGGCCACAAGCCTAGAGATGGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGCAGCTAGGAGTGTCAATGGCCACAAGCCTAGAGATGGACACT  350

seq1  GCAGGATACAGCCATGCGTACTGTCTACTTGTGCCAGGTGTGGTCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATACAGCCATGCGTACTGTCTACTTGTGCCAGGTGTGGTCTCCTA  400

seq1  AGGTCAACTGTGACCGCATTTCTATTCGGCAGACAGGAAGTGTGCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAACTGTGACCGCATTTCTATTCGGCAGACAGGAAGTGTGCTATAC  450

seq1  ACACACCATGTTCTCTCTTCTTACTCTTCCCTTAGCAGGATCCATTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATGTTCTCTCTTCTTACTCTTCCCTTAGCAGGATCCATTGGCA  500

seq1  GCCTAGTGAGGGCAGGCTCCAGGCAACAGACAACAGGAGTCTGAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGAGGGCAGGCTCCAGGCAACAGACAACAGGAGTCTGAGGACAG  550

seq1  GAGGGGACAGAGAGGAGGGGAGGCAGCAAGGAAGCTCTTCTTGGCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACAGAGAGGAGGGGAGGCAGCAAGGAAGCTCTTCTTGGCTCCTC  600

seq1  CAGAGCCACCGCTGCAGGTGACTGCCATGTTACTGTCTATGATCCTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACCGCTGCAGGTGACTGCCATGTTACTGTCTATGATCCTGGTC  650

seq1  TGCTTTGTTTTCCCTGCCTCTTAAGGGATTAAAAGTCAGGAAAAACCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTTTCCCTGCCTCTTAAGGGATTAAAAGTCAGGAAAAACCTTA  700

seq1  AGCACAGAAGGCAACAAACTATTAAAAGTGAGGACGCGCTCCTGCACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAAGGCAACAAACTATTAAAAGTGAGGACGCGCTCCTGCACACC  750

seq1  CACACAGATGGACAGACTTCCCACATGTGGACAAATGATTCAGAATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATGGACAGACTTCCCACATGTGGACAAATGATTCAGAATCCAA  800

seq1  AGCCAAGACGCTCTGGAGCAGCAGTTCTCAACCTGTGGGTCGCGACCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACGCTCTGGAGCAGCAGTTCTCAACCTGTGGGTCGCGACCCCC  850

seq1  ACAGGGATCTCATATCACATGTCCTGCATATCAGATATTTACATTACGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATCTCATATCACATGTCCTGCATATCAGATATTTACATTACGAT  900

seq1  TCATAATAGTAGAAAAATTACAATTACGAAGTAGCCCATGAAAATAATTT  950
      ||||||||||||||||||||| |||||||||||||||||| |||||  ||
seq2  TCATAATAGTAGAAAAATTAC-ATTACGAAGTAGCCCATG-AAATA--TT  946

seq1  TGTGGTCTGGGGGGAAGGGGGAGTTCACCACAACATGAGGAAATGT-ATT  999
      |||||||| ||||||| ||||||||||| ||||||||||||| ||| |||
seq2  TGTGGTCT-GGGGGAAAGGGGAGTTCACTACAACATGAGGAATTGTAATT  995

seq1  AAAGGGTTGCAGAATTAAGAAGGT  1023
      |||||||||||||    |||||||
seq2  AAAGGGTTGCAGA---TAGAAGGT  1016

seq1: chr17_59972859_59973033
seq2: B6Ng01-296J21.g_381_731

seq1  ATATATATATATACACATATATATATACACACACACATATAT--------  42
      ||||||||||||| | ||||||||||||||||||||||||||        
seq2  ATATATATATATATATATATATATATACACACACACATATATATATATAT  50

seq1  ---------ACACACACAT-------------------------------  52
               | | ||||||                               
seq2  ATAAAAAAAAAAAACACATTTCTCTCTCTCTCTCTCTCTTTTCTCTCTCT  100

seq1  --------------------------------------------------  52
                                                        
seq2  CTCTCTCTCTCTCTCTCTAAAAAACAAGCGAGCGGAGAGACAGAGAGAGA  150

seq1  ---ATATATACACACACATACACACATATATACAC------ACACACACA  93
         | ||| ||| | | ||| | | ||||||||||      | | | | |
seq2  GAGAGATAGACATATATATATATATATATATACACATAGAGAGAGAGAGA  200

seq1  CATACACACACACACAC-ATATATA-TACACACATATACACACACACACA  141
      || | |||||||||||| | | | |  |||||||||||||||||||||||
seq2  CAGAGACACACACACACAAGAAAGAGCACACACATATACACACACACACA  250

seq1  CAC--------------------------------------------ACA  147
      |||                                            |||
seq2  CACTCTCTCTCTCTATCTCTCTCTCTGTGTGGATATATAGAGATAGAACA  300

seq1  CACAC-----------------------ACATATATATATATATATATAG  174
      |||||                       | ||||||||||||||||||||
seq2  CACACTGAGAGTGTGCGCGTGTGTCTATATATATATATATATATATATAG  350

seq1  A  175
      |
seq2  A  351