BAC Information

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BAC

Clone NameB6Ng01-296P01
Chromosome4 (Build37)
Map Location 80,480,101 - 80,481,228
singlet/doubletsinglet
Overlap geneTyrp1
Upstream genenone
Downstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296P01.bB6Ng01-296P01.g
ACCGA092425GA092426
length1,1301,167
definitionB6Ng01-296P01.b B6Ng01-296P01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggtgtgagaagggattagtgagagctggaagagaggaccag
cccctcccagtgtgaggaatctggcttgggatttactgtctggcagaaaa
tctcttcgggcaattaacagctggcatcaggggaaaagcagacatccaac
aacactagctctgaaggagatcagcagagaaaccttccagggattcatgg
tactggtgagcagctctgtggtgggtaccctgtgaccaaagctctaggaa
catgaaggagatttgcttgctataaacctgtttcctattctcctttcatt
tccatggttaactattactatggtagtcaccaactagtggatgcttttgg
taaatgacatctatggaaagtctttttggatcagggtgatctttttatgt
atgtgtatgtgcatggatatgggtgcacgagagcaggtgcccagattctc
aaggagggcttcagttacaaggagttgggagtgatctgatgtggttgcaa
ggcactgaagtcagtctctctgtaagagcactctatgctccttaccactg
tgccttctccccagcccaagaatagtattcttatgggtagaaattttaaa
taagaaaactcaaagaccaggagagtgagttctgtcatctagctattatg
cctgcagatatttaaaggtgaataattgttttgactattgtttagaaatg
ttgtttcacatgaaagattccatttccggagtgggttgaaaaagtatgca
aaagaacttttgcaactctgtttttgcctttctgtttttcagctgtattt
tcatctgagcacccctgtcttctccatgcaaagagcagcataggagacct
gtgttctgaactctttgcttcgagaagaatgaaatcttacaacgtcctcc
ccctagcctatatctcccttttcctgatgctgtttttatcaggtttgggc
tcagtttccacgagagtgtgccaattattgaaggctctgagacgtggggt
gtgttgcccagacctgcttcccttcctctgggaccgggtactgaccttgt
ggcctcatcatcagagagcaggtgtgttgctgtgatgcaaactccgaccc
acaagccgccatttatccccacgatggtaa

gaattccccttaaagagatagcccctctggctatctatcccttgcttcag
ggaagatgagcggggatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcggcccgc
actttcgccatggtagcgtaggcttttgctgcagtggaggcgggacaatc
tcctcagatttggtttgccgctctaaaagaaattatgctgcgttatgccg
tggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatcc
tgtggaaggcacgtctgattgcatgaaggttcagtgtcctagttcccttc
ccccaggaaaaatgacacgggagctggccaagacctctctgggtgatgag
cctaagggatggttttgtgtagggcccctatgcttgcacactggggatca
gacctctaccttcacccatgaggcttgcttgcagcaattaagagctggcc
atagattaatcggcatcctggccctttgatgcacctgccgcaagcaaaac
acaatctccccaggagtggcttggcatgactgagaggtagtcagtgataa
gactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctgt
ttgtcacccaaggacgggtaaggggcatggctgcggggggctatctacag
acattctctctgccaaaaaagaaaaaagggggaattgtggggagcgggtg
tggcggcagtcccaaaggcgccagagactgtagctaagtcatatgacttg
cacctgacttcctcatataagacacaaacatcttgagtgctgcgcaggtg
taccaggatacaggtgaatcccaaattgatggagatttgcccctgctgcc
ctgattagctgaagctgcgtgcctggtgagtggcgtggcctgctgtgcat
ggatgggaactgagagtataaagagtgagaggccaggtccggggagatat
aaaacaagggagaaataaacagggagatataacaggagagaattaaacaa
gggagaatatattggagaaagaagaacagactgattatgtgtgtcagatg
atcttgtacagctcgatcttctgaccagcttgacgacagcagtatatcca
gagagagatcctggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80480101_80481228
seq2: B6Ng01-296P01.b_47_1176

seq1  GAATTCACTGGTGTGAGAAGGGATTAGTGAGAGCTGGAAGAGAGGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTGTGAGAAGGGATTAGTGAGAGCTGGAAGAGAGGACCAG  50

seq1  CCCCTCCCAGTGTGAGGAATCTGGCTTGGGATTTACTGTCTGGCAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAGTGTGAGGAATCTGGCTTGGGATTTACTGTCTGGCAGAAAA  100

seq1  TCTCTTCGGGCAATTAACAGCTGGCATCAGGGGAAAAGCAGACATCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGGGCAATTAACAGCTGGCATCAGGGGAAAAGCAGACATCCAAC  150

seq1  AACACTAGCTCTGAAGGAGATCAGCAGAGAAACCTTCCAGGGATTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAGCTCTGAAGGAGATCAGCAGAGAAACCTTCCAGGGATTCATGG  200

seq1  TACTGGTGAGCAGCTCTGTGGTGGGTACCCTGTGACCAAAGCTCTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGAGCAGCTCTGTGGTGGGTACCCTGTGACCAAAGCTCTAGGAA  250

seq1  CATGAAGGAGATTTGCTTGCTATAAACCTGTTTCCTATTCTCCTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGAGATTTGCTTGCTATAAACCTGTTTCCTATTCTCCTTTCATT  300

seq1  TCCATGGTTAACTATTACTATGGTAGTCACCAACTAGTGGATGCTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTAACTATTACTATGGTAGTCACCAACTAGTGGATGCTTTTGG  350

seq1  TAAATGACATCTATGGAAAGTCTTTTTGGATCAGGGTGATCTTTTTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACATCTATGGAAAGTCTTTTTGGATCAGGGTGATCTTTTTATGT  400

seq1  ATGTGTATGTGCATGGATATGGGTGCACGAGAGCAGGTGCCCAGATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTGCATGGATATGGGTGCACGAGAGCAGGTGCCCAGATTCTC  450

seq1  AAGGAGGGCTTCAGTTACAAGGAGTTGGGAGTGATCTGATGTGGTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGCTTCAGTTACAAGGAGTTGGGAGTGATCTGATGTGGTTGCAA  500

seq1  GGCACTGAAGTCAGTCTCTCTGTAAGAGCACTCTATGCTCCTTACCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAAGTCAGTCTCTCTGTAAGAGCACTCTATGCTCCTTACCACTG  550

seq1  TGCCTTCTCCCCAGCCCAAGAATAGTATTCTTATGGGTAGAAATTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTCCCCAGCCCAAGAATAGTATTCTTATGGGTAGAAATTTTAAA  600

seq1  TAAGAAAACTCAAAGACCAGGAGAGTGAGTTCTGTCATCTAGCTATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACTCAAAGACCAGGAGAGTGAGTTCTGTCATCTAGCTATTATG  650

seq1  CCTGCAGATATTTAAAGGTGAATAATTGTTTTGACTATTGTTTAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGATATTTAAAGGTGAATAATTGTTTTGACTATTGTTTAGAAATG  700

seq1  TTGTTTCACATGAAAGATTCCATTTCCGGAGTGGGTTGAAAAAGTATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCACATGAAAGATTCCATTTCCGGAGTGGGTTGAAAAAGTATGCA  750

seq1  AAAGAACTTTTGCAACTCTGTTTTTGCCTTTCTGTTTTTCAGCTGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTTTGCAACTCTGTTTTTGCCTTTCTGTTTTTCAGCTGTATTT  800

seq1  TCATCTGAGCACCCCTGTCTTCTCCATGCAAAGAGCAGCATAGGAGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGAGCACCCCTGTCTTCTCCATGCAAAGAGCAGCATAGGAGACCT  850

seq1  GTGTTCTGAACTC-TTGCTTCGAGAAGAATGAAATCTTACAACGTCCTCC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGAACTCTTTGCTTCGAGAAGAATGAAATCTTACAACGTCCTCC  900

seq1  CCCTAGCCTATATCTCCCTTTTCCTGATGCTG-TTTTATCAGGTTTGGGC  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTAGCCTATATCTCCCTTTTCCTGATGCTGTTTTTATCAGGTTTGGGC  950

seq1  TCAGTTTCCACGAGAGTGTGCCAA-TATTG-AGGCTCTGAGACGTGGGGT  996
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TCAGTTTCCACGAGAGTGTGCCAATTATTGAAGGCTCTGAGACGTGGGGT  1000

seq1  GTGTTGCCCAGACCTGC-TCCCTTCCTCT-GGACCGGGGACTGACCCTTG  1044
      ||||||||||||||||| ||||||||||| |||||||| ||||| |||||
seq2  GTGTTGCCCAGACCTGCTTCCCTTCCTCTGGGACCGGGTACTGA-CCTTG  1049

seq1  TGG-CTCATCATCAGGAAGAGGCAGGTGTGTGGCTGTGATTGCAGACTCC  1093
      ||| |||||||||||  ||| |||||||||| ||||||| |||| ||| |
seq2  TGGCCTCATCATCAG--AGA-GCAGGTGTGTTGCTGTGA-TGCAAACT-C  1094

seq1  CGACCCCACAGCCGCCA-TTATCCCCACGATGGTAA  1128
      ||||||   |||||||| ||||||||||||||||||
seq2  CGACCCACAAGCCGCCATTTATCCCCACGATGGTAA  1130


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