BAC Information

Click to search

BAC

Clone NameB6Ng01-301N22
Chromosome4 (Build37)
Map Location 147,127,971 - 147,129,141
singlet/doubletsinglet
Overlap geneLOC100041677
Upstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N22.bB6Ng01-301N22.g
ACCGA096070GA096071
length1,1631,156
definitionB6Ng01-301N22.b B6Ng01-301N22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccattgtttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatataatggatattagtc
ccctatctgattcaggattggtaaagatcctttcccagtctgttgggggc
ctttttgtcttattgacagtgtctttgcaattttatgaggtcccaattgt
caattcttgatcttacagcacaagccattgcttttctactcaggaatttt
tcccctgtgcccatatcttcgaggcttttcctaaacacaataaaagcaat
ctacagcaaaccagtagccaacatcaaagtaaatggagaaaagctggaag
caatcccactaaaatcagggactagacaaggctgcccactttctccctac
ctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaa
ggagatcaaggggatacaaattggaaaggaagaaggcaaaatatcactct
ttacaggtgatatggtagtacatacaagtgaccctaaaaattccaccaga
gaactcctaaacctgataaacagcttcagtgaaggagctggatataaaat
taactcaaacaaatcaatgccctttctctacacaaaggctaaacaggctg
agaaagaaattagggaaacaacactcttcacaatagtcacaaataatata
aaatatcttggcatgactctaaggaagtgaagatctgtatgataagatct
tcaagtctctgaagaaagaaatcaaagaagatttcaaaagatagaaagat
ctcccatgctcatggattgtcaggatcaatattgtaaaaatggctatctt
gccgaaagcaatcagattcaatgcaatccccatcaaaatttccaactcaa
ttcttcaacgaattggaaagggcaatctgaaattcatctggaatacaaac
ctaggataggaaaactcttctcaatgacaaagatctctggtggatcacta
ttcctgactaaagctatactacagagcattgtgattaaaacaaaacaagt
gcatggtactggtatgcgacggacagatagattagacccagaatgacccc
acacaccctagtgtactgatcttgacagaagcctaaatcatcagttgcaa
aaggcaccacctg
gaattcatacaggagagaacccttacaaatgcagtgaatgtgacaaatgc
tttacccaaaaatccaatcttaatattcatcagagaattcatacaggaga
gaaaccttataaatgcagtgaatgtgacaaatgctttactgaaaaaggca
gtctgagaattcatcagagaattcatacaggagagaatccttacaaatgc
agtgaatgtgacaaatgctttacccgaaaattccatcttagtattcatca
gaaaatccatacaggagagaaaccttacaaatagtttacatgtgacaaat
acaatattcaccatgtcagtctgagaaatcatcagttacttcatacagta
gagaatctttataaatgaagtgaacgagataatcctttaccaaaatatat
catcttataattcattagtgaatacttagagaagacaaacttcaaatata
ttataggtatgaatcctttccttttggcctatttcctagaatataacagt
gaatatacttacaggctagaaacttaactcatgcattgtatgaagaaata
tctttgacttcatttgaggtcagagaaaacatctaagaactttttaaggg
atagtatttctgttgggaaaaatgtggcatatgttttattcacggtgtat
tcttgacaacacttgaggctccactctagagaattagtatgattatgaaa
atcttgtgaaaattttcatgcaatgttcaaatcttgggtaatgtcaacta
tttatgctggaggacctctgtacatgtgaaaatgtagaaagcctttcatg
acaacttttacttgttcaccctcaaatgttacaaaaaagagtatctggca
aactgagccacccagacagcatattctttatcctataagtatgcttacag
atgttaagtgtgcttcgagtatccagaaatcatatttcttctcaatgctt
gtttcacattataggataacactgagtatgagtctcttgtgatctgctca
acactcctttcctatgtcctgtaactaactcaataaagctgaagttcaac
agtttgcctttggttgtttcatttcactgggatactcagaatgaatatat
ggtgcatctccagaaagtgactcaataaaatacgcggaaggtataaatat
ttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147127971_147129141
seq2: B6Ng01-301N22.g_67_1222 (reverse)

seq1  GCAAAAATATTTATAACTTCCGCGTATTTTTTATGTGAGTCATTTTCTGG  50
      ||||||||||||||| |||||||||||||| |   ||||||| |||||||
seq2  GCAAAAATATTTATACCTTCCGCGTATTTTAT---TGAGTCACTTTCTGG  47

seq1  GAAGATGCAACATATATTCA-TCTGAGTATCCCAAGTGAAAATTGAAAAC  99
        ||||||| |||||||||| |||||||||||| |||||||  || ||||
seq2  --AGATGCACCATATATTCATTCTGAGTATCCC-AGTGAAA--TG-AAAC  91

seq1  AACCAAA-GCAAACTTGTTGAAACTTTCAGCTTTATTGGAGTTAGTTACA  148
      ||||||| |||||| |||||||   |||||||||||| ||||||||||||
seq2  AACCAAAGGCAAAC-TGTTGAA--CTTCAGCTTTATT-GAGTTAGTTACA  137

seq1  GGACAATAGGAAAGGAGTTGTTGAGCAGATCACAAGAGACTCATACTCAG  198
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAC-ATAGGAAAGGAG-TGTTGAGCAGATCACAAGAGACTCATACTCAG  185

seq1  TTGTTATCCTATAATGTGAAACAAGCATTTGAGAAGAAATATGATTTCTG  248
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TGTTATCCTATAATGTGAAACAAGCA-TTGAGAAGAAATATGATTTCTG  233

seq1  GATACTCGAAGCACACTTAACATCTGTAAGCATACTTATAGGATAAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCGAAGCACACTTAACATCTGTAAGCATACTTATAGGATAAAGAA  283

seq1  TATGCTGTCTGGGTGGCTCAGTTTGCCAGATACTCTTTTTTGTAACATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTCTGGGTGGCTCAGTTTGCCAGATACTCTTTTTTGTAACATTT  333

seq1  GAGGGTGAACAAGTAAAAGTTGTCATGAAAGGCTTTCTACATTTTCACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAACAAGTAAAAGTTGTCATGAAAGGCTTTCTACATTTTCACAT  383

seq1  GTACAGAGGTCCTCCAGCATAAATAGTTGACATTACCCAAGATTTGAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGGTCCTCCAGCATAAATAGTTGACATTACCCAAGATTTGAACA  433

seq1  TTGCATGAAAATTTTCACAAGATTTTCATAATCATACTAATTCTCTAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGAAAATTTTCACAAGATTTTCATAATCATACTAATTCTCTAGAG  483

seq1  TGGAGCCTCAAGTGTTGTCAAGAATACACCGTGAATAAAACATATGCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTCAAGTGTTGTCAAGAATACACCGTGAATAAAACATATGCCAC  533

seq1  ATTTTTCCCAACAGAAATACTATCCCTTAAAAAGTTCTTAGATGTTTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCAACAGAAATACTATCCCTTAAAAAGTTCTTAGATGTTTTCT  583

seq1  CTGACCTCAAATGAAGTCAAAGATATTTCTTCATACAATGCATGAGTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCAAATGAAGTCAAAGATATTTCTTCATACAATGCATGAGTTAA  633

seq1  GTTTCTAGCCTGTAAGTATATTCACTGTTATATTCTAGGAAATAGGCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGCCTGTAAGTATATTCACTGTTATATTCTAGGAAATAGGCCAA  683

seq1  AAGGAAAGGATTCATACCTATAATATATTTGAAGTTTGTCTTCTCTAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGATTCATACCTATAATATATTTGAAGTTTGTCTTCTCTAAGT  733

seq1  ATTCACTAATGAATTATAAGATGATATATTTTGGTAAAGGATTATCTCGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAATGAATTATAAGATGATATATTTTGGTAAAGGATTATCTCGT  783

seq1  TCACTTCATTTATAAAGATTCTCTACTGTATGAAGTAACTGATGATTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCATTTATAAAGATTCTCTACTGTATGAAGTAACTGATGATTTCT  833

seq1  CAGACTGACATGGTGAATATTGTATTTGTCACATGTAAACTATTTGTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGACATGGTGAATATTGTATTTGTCACATGTAAACTATTTGTAAG  883

seq1  GTTTCTCTCCTGTATGGATTTTCTGATGAATACTAAGATGGAATTTTCGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCCTGTATGGATTTTCTGATGAATACTAAGATGGAATTTTCGG  933

seq1  GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGATTCTCTCCTGTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGATTCTCTCCTGTATG  983

seq1  AATTCTCTGATGAATTCTCAGACTGCCTTTTTCAGTAAAGCATTTGTCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTGATGAATTCTCAGACTGCCTTTTTCAGTAAAGCATTTGTCAC  1033

seq1  ATTCACTGCATTTATAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGCATTTATAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATA  1083

seq1  TTAAGATTGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTA  1133

seq1  AGGGTTCTCTCCTGTATGAATTC  1171
      |||||||||||||||||||||||
seq2  AGGGTTCTCTCCTGTATGAATTC  1156