BAC Information

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BAC

Clone NameB6Ng01-302D05
Chromosome4 (Build37)
Map Location 14,271,065 - 14,426,201
singlet/doubletdoublet
Overlap geneLOC433688
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneSlc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302D05.bB6Ng01-302D05.g
ACCGA096314GA096315
length1,1671,149
definitionB6Ng01-302D05.b B6Ng01-302D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,425,260 - 14,426,201)(14,271,065 - 14,272,215)
sequence
gaattctcagtctgtatgtataaatgtggagggggtatggcaaccaccag
cctgcaattccagcctgggagggtagagcctaattcagcccagttctctg
acaatgtgtagcaaaagttgcctcttctggtttctaataatatgtcttct
tttgtgtatttttttcatggctacattcctaccatctctcggttaatgat
catttatttattcttcagaatggaggctttgtctataacttgtcttttgc
tttgtagccatgactgtaattgcttttaaagtacatcttctaccaacaga
aatctgggctcttagtatccatctcaaaactctgacctctaccaattttt
cagttcccaaagctccttccatatcttttaggttatagcagaagttctca
gtttagcaacaaaacccatcagtctgtttgagcatctgtaaccaaatact
aaatgcttatggctgaaacaggaacaaagttctattttagaggttagaaa
tacagttaaggtgcagaccaatttggtctctggtaagtacattccccttg
gtttctagttggatgctttttctgtgtgtctttatggtagaagaagctat
ttttatatacactagtgttttcctaatattcactaatattcctaatattt
cactaatattctgaagtccaggactcaaactcatgaactggtacagtctt
gtcagccccattgccatattgaatggttggatttctatagggtaaaagat
ccaagctcatttctggatttgaaaacaccaattcctgagcttgaaaatcc
accagtcctggagcttgaaaacccaccaatccctgagtttaaaaaccact
aatccctgtgttaggcttgggcctatgcttgcccctacacaatctgggaa
gggctgtctgttcttcttccctcaactccagccccacggagaaaacatca
gctggcatgtctctgcatttctggtaaccctgtcaggggttcagttttga
ccatagattacccctcatagctgacactactggttatcactctcactagc
tctattaaacacctcaggaactcaccttccattgactcgaccatgagatt
cactgatctaaccttaggagctgcttctataaactcgcgttaatctggaa
ttcatatttgaattggg

gaattcttctgtttcttttttttcagtttgataccagtctgcctgctcta
tgcagtgagttccaggacagacagtactacccagtgaaactgcttcggga
aaacagaataaacaaaaagatcacagcattaggaaggctgagaaccactg
acttagacaacaaggcaaacatcaatcacacatacttgctgacagaggaa
acactggcttcctctgctacaagaagaagcaccccccattctcaagatcc
acccaaagccctgccaagttgcagaatccctgtaaccacactgcccagca
aaggcatacaaaccttgctttatcaatgtaaatacaaaggctggccagtg
gaggcagtaaaccccaaatggcagtcttacctaagagccaagatagcaaa
tccatccattggagaaactgagagcaaattttgcctgtcttgtgtttcta
caatctggcacctctggcctcacaacttagactaatgaaggtctgtcaat
cacaaccagagagagatctcacctcaaaaggtgctgacgcaaggaggcaa
gagtcatgacaagtttgggacagatagaaaaaactgcaaaggttatcata
aagtggcagagttcagaaggaccacgtggaaaatgctcagttaattacaa
gaatatgagggtggagagatgggatatgaagcagattactggagaaagtg
ggaagagagccacccccccccccaaaatataaggagaaatcctggtagaa
aagaatacatatcactaaagaattcaatgaacaattcaagagtacgttca
agcaagtagatctcagaaggtatacacagggcaattccattagaagagaa
aaaccatgaaagggagtgaagagatgctgaggccgttacaaagcatccac
cgagaaaactacttgaaaagacacctaggttacagaaacacagacttcca
agaaaagctttactaatgagagcactcctgacagattgtatggagacatg
gctgtagttgggtttccttgctctctagagatcggtggtgctggacattg
gttctcaaatacatgtaacaatgcttgtgctatttggcaaatctgtattc
aatcgttcgtacagtctgtttacatctttgttgaatattttccttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14425260_14426201
seq2: B6Ng01-302D05.b_272_1209 (reverse)

seq1  CCCAATTC-AATATGAA-TCAAGATAAAGGCGAGTTTATTGGGAAGCAGC  48
      |||||||| |||||||| || |||| || ||||||||||   ||||||||
seq2  CCCAATTCAAATATGAATTCCAGATTAACGCGAGTTTAT--AGAAGCAGC  48

seq1  T-CTAGGGTAGGTTCAGTG-ATCTCATGGGTCGAGGTCAAT-GAAGTTGA  95
      | ||| |||  | |||||| ||||||| |||||| |||||| |||| |||
seq2  TCCTAAGGTTAGATCAGTGAATCTCAT-GGTCGA-GTCAATGGAAGGTGA  96

seq1  GTCCCTGGGGTGTTT-ATAGAGCTTAAGTGAGGAGTGATAACCAGTAGTG  144
      || |||| ||||||| ||||||||  ||||| ||||||||||||||||||
seq2  GTTCCTGAGGTGTTTAATAGAGCT--AGTGA-GAGTGATAACCAGTAGTG  143

seq1  TCAGCTATGAGGGGTAATCTATGGTCAAAAACTGAACCCCTGGACAGGGT  194
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TCAGCTATGAGGGGTAATCTATGGTC-AAAACTGAACCCCT-GACAGGGT  191

seq1  TACCAGAAATGCAGAGACATGCCAGCCTGATGTTTTCTCCGTGGGGCTGG  244
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCAGAAATGCAGAGACATGCCAG-CTGATGTTTTCTCCGTGGGGCTGG  240

seq1  AGTTGAGGGAAGAAGAACAGACAGCCCTTCCCAGATTGTGTAGGGGCAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGGAAGAAGAACAGACAGCCCTTCCCAGATTGTGTAGGGGCAAG  290

seq1  CATAGGCCCAAGCCTAACACAGGGATTAGTGGTTTTTAAACTCAGGGATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCCAAGCCTAACACAGGGATTAGTGGTTTTTAAACTCAGGGATT  340

seq1  GGTGGGTTTTCAAGCTCCAGGACTGGTGGATTTTCAAGCTCAGGAATTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTTTCAAGCTCCAGGACTGGTGGATTTTCAAGCTCAGGAATTGG  390

seq1  TGTTTTCAAATCCAGAAATGAGCTTGGATCTTTTACCCTATAGAAATCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAATCCAGAAATGAGCTTGGATCTTTTACCCTATAGAAATCCA  440

seq1  ACCATTCAATATGGCAATGGGGCTGACAAGACTGTACCAGTTCATGAGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAATATGGCAATGGGGCTGACAAGACTGTACCAGTTCATGAGTT  490

seq1  TGAGTCCTGGACTTCAGAATATTAGTGAAATATTAGGAATATTAGTGAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTGGACTTCAGAATATTAGTGAAATATTAGGAATATTAGTGAAT  540

seq1  ATTAGGAAAACACTAGTGTATATAAAAATAGCTTCTTCTACCATAAAGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAAACACTAGTGTATATAAAAATAGCTTCTTCTACCATAAAGAC  590

seq1  ACACAGAAAAAGCATCCAACTAGAAACCAAGGGGAATGTACTTACCAGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAAGCATCCAACTAGAAACCAAGGGGAATGTACTTACCAGAG  640

seq1  ACCAAATTGGTCTGCACCTTAACTGTATTTCTAACCTCTAAAATAGAACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTGGTCTGCACCTTAACTGTATTTCTAACCTCTAAAATAGAACT  690

seq1  TTGTTCCTGTTTCAGCCATAAGCATTTAGTATTTGGTTACAGATGCTCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTGTTTCAGCCATAAGCATTTAGTATTTGGTTACAGATGCTCAA  740

seq1  ACAGACTGATGGGTTTTGTTGCTAAACTGAGAACTTCTGCTATAACCTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGATGGGTTTTGTTGCTAAACTGAGAACTTCTGCTATAACCTAA  790

seq1  AAGATATGGAAGGAGCTTTGGGAACTGAAAAATTGGTAGAGGTCAGAGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGGAAGGAGCTTTGGGAACTGAAAAATTGGTAGAGGTCAGAGTT  840

seq1  TTGAGATGGATACTAAGAGCCCAGATTTCTGTTGGTAGAAGATGTACTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGATACTAAGAGCCCAGATTTCTGTTGGTAGAAGATGTACTTT  890

seq1  AAAAGCAATTACAGTCATGGCTACAAAGCAAAAGACAAGTTATAGACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATTACAGTCATGGCTACAAAGCAAAAGACAAGTTATAGACA  938


seq1: chr4_14271065_14272215
seq2: B6Ng01-302D05.g_67_1215

seq1  GAATTCTTCTGTTTCTTTTTTTTCAGTTTGATACCAGTCTGCCTGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTTTCTTTTTTTTCAGTTTGATACCAGTCTGCCTGCTCTA  50

seq1  TGCAGTGAGTTCCAGGACAGACAGTACTACCCAGTGAAACTGCTTCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGTTCCAGGACAGACAGTACTACCCAGTGAAACTGCTTCGGGA  100

seq1  AAACAGAATAAACAAAAAGATCACAGCATTAGGAAGGCTGAGAACCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATAAACAAAAAGATCACAGCATTAGGAAGGCTGAGAACCACTG  150

seq1  ACTTAGACAACAAGGCAAACATCAATCACACATACTTGCTGACAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACAACAAGGCAAACATCAATCACACATACTTGCTGACAGAGGAA  200

seq1  ACACTGGCTTCCTCTGCTACAAGAAGAAGCACCCCCCATTCTCAAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTTCCTCTGCTACAAGAAGAAGCACCCCCCATTCTCAAGATCC  250

seq1  ACCCAAAGCCCTGCCAAGTTGCAGAATCCCTGTAACCACACTGCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCCCTGCCAAGTTGCAGAATCCCTGTAACCACACTGCCCAGCA  300

seq1  AAGGCATACAAACCTTGCTTTATCAATGTAAATACAAAGGCTGGCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATACAAACCTTGCTTTATCAATGTAAATACAAAGGCTGGCCAGTG  350

seq1  GAGGCAGTAAACCCCAAATGGCAGTCTTACCTAAGAGCCAAGATAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTAAACCCCAAATGGCAGTCTTACCTAAGAGCCAAGATAGCAAA  400

seq1  TCCATCCATTGGAGAAACTGAGAGCAAATTTTGCCTGTCTTGTGTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATTGGAGAAACTGAGAGCAAATTTTGCCTGTCTTGTGTTTCTA  450

seq1  CAATCTGGCACCTCTGGCCTCACAACTTAGACTAATGAAGGTCTGTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGGCACCTCTGGCCTCACAACTTAGACTAATGAAGGTCTGTCAAT  500

seq1  CACAACCAGAGAGAGATCTCACCTCAAAAGGTGCTGACGCAAGGAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAGAGAGAGATCTCACCTCAAAAGGTGCTGACGCAAGGAGGCAA  550

seq1  GAGTCATGACAAGTTTGGGACAGATAGAAAAAACTGCAAAGGTTATCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGACAAGTTTGGGACAGATAGAAAAAACTGCAAAGGTTATCATA  600

seq1  AAGTGGCAGAGTTCAGAAGGACCACGTGGAAAATGCTCAGTTAATTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAGAGTTCAGAAGGACCACGTGGAAAATGCTCAGTTAATTACAA  650

seq1  GAATATGAGGGTGGAGAGATGGGATATGAAGCAGATTACTGGAGAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGGGTGGAGAGATGGGATATGAAGCAGATTACTGGAGAAAGTG  700

seq1  GGAAGAGAGCCACCCCCCCCCCCAAAATATAAGGAGAAATCCTGGTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGCCACCCCCCCCCCCAAAATATAAGGAGAAATCCTGGTAGAA  750

seq1  AAGAATACATATCACTAAAGAATTCAATGAACAATTCAAGAGTACGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACATATCACTAAAGAATTCAATGAACAATTCAAGAGTACGTTCA  800

seq1  AGCAAGTAGATCTCAGAAGGTATACACAGGGCAATTCCATTAGAAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTAGATCTCAGAAGGTATACACAGGGCAATTCCATTAGAAGAGAA  850

seq1  AAACCATGAAAGGGAGTGAAGAGATGCTGAGGCCGTTACAAAGCATCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGAAAGGGAGTGAAGAGATGCTGAGGCCGTTACAAAGCATCCAC  900

seq1  CGAGAAAACTACTTGAAAAAGACACCTAGGTTACAGAAACACAGAC-TCC  949
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  CGAGAAAACTACTTG-AAAAGACACCTAGGTTACAGAAACACAGACTTCC  949

seq1  AAGAAAAGC-TTACTAATGAGAGCACTCCTGACAGA-TGTATGGAGACAT  997
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AAGAAAAGCTTTACTAATGAGAGCACTCCTGACAGATTGTATGGAGACAT  999

seq1  GGCTGTAGTTTGGGTTCCTGCCTCTCTAGAGATCGGTGGTGCTGAACATT  1047
      |||||||||| || |||||  ||||||||||||||||||||||| |||||
seq2  GGCTGTAGTTGGGTTTCCTTGCTCTCTAGAGATCGGTGGTGCTGGACATT  1049

seq1  -GTTCTCAAATACATGTACAATTGCCTTGTGCTATTTTGCAAAATCTGTA  1096
       |||||||||||||||||  | || |||||||||||| || |||||||||
seq2  GGTTCTCAAATACATGTAACAATG-CTTGTGCTATTTGGC-AAATCTGTA  1097

seq1  TTCTATCCTTTCTGTACATTCTGTTTTACATCTTTGTTGGATATTTTCTT  1146
      ||| ||| ||   ||||| |||| ||||||||||||||| |||||||| |
seq2  TTCAATCGTT--CGTACAGTCTG-TTTACATCTTTGTTGAATATTTTCCT  1144

seq1  TATTT  1151
      |||||
seq2  TATTT  1149


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