BAC Information

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BAC

Clone NameB6Ng01-302K05
Chromosome4 (Build37)
Map Location 146,553,756 - 146,660,660
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302K05.bB6Ng01-302K05.g
ACCGA096636GA096637
length1,1411,028
definitionB6Ng01-302K05.b B6Ng01-302K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,659,610 - 146,660,660)(146,553,756 - 146,554,752)
sequence
gaattcaataggagacccaaaaatagacccacacacctacggacagtacg
caggccacacacacacacacaagtgcgggtagctgcagaggacaggagag
ggccttgtgctttgaagctagctctaagtgtcccgctccagtctttttct
tttttttttttttaaactttgtaagtatttatcattgctcatcctgtgtg
acatttagagctatatcacagttttagtgaggttgccaaggatatgttgc
cagtttatatacattcctgcatattaagaagtgatttagaggcttgggga
ggcagctcagtaattaaaaacactctgctgcacttgtggagcagggttga
attcccaggactcacatggtggatcagaactgaaactccaattccaggaa
gtacaatgtcctcttctgacctctgtgggcaccaggcatgtatgtgatgg
agcacagatacacatgtaggcgaaaacacccttatacaaaaaaataatat
gttttcaataaaataagaaaaatgtttaaaaggaaagtagtaactcaggc
tgggaatgtgctagcctggtaccacaaatcttacattcagagctcagacc
catgtcacatgttgagatggtacacgcttttagtcccctcagaatttgtg
aggtggaagccgaaggattaaagagtcaggcacatcctctgtgacatagt
cagtttgaggaagaccagcctgagctacatgagaccctctcttgaaacac
aaaggaagcaaagaatgactgtggtccaggattctggggtcactgccccc
agctttgatttacaaaccaccagttgtgtacagtatgcagtgatcagaac
ccacctcacagctaatactgcatttgctccttagcatcaagaagaaaggc
caggcacttttccaaatgctttagaaataaaaaagttgttatttaattct
ccaccacttgaagcaggtttgctttttgccagccacattttaaagagaga
ctaggatctggatagatgctggtggttaagagccactggctgcctctttc
agggaaccaatgtcggtctcagtacacaccatagtgactcatggacattc
acttggaacttgcaagttcctagaactgaatgctcttcagg
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgc
tttactttcaaaggcagtctgaggattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggca
aactgagaattcatcagagaattcataaaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttactgaaaaaggccatcagagaattcatac
aggagagatagcttacaaatagtttgtatgtgacaaatacaatacaatgt
cagtctgagaaatcatcagtttttaatacagtagagaatatttataaatg
aagtgaacgagacaatcctttaccaagatatatcatcttaaaaatcatta
gagaatacttacagaagagaaacttttcaattatatcgaaggtatgaatc
ctttactcttggcctatttcctagaatgttaacagtgaatacttacagga
tacaaacttaactcatgcattgtatgaagaaatatctttgacttcatttc
aggtcaaagagaatatctaataactttttaggtgaaagtatttctgttgg
ggaaagtgtggcctgtgttttattcacgttctattcttgacaacaattga
ggctccacactagagaattagtatgattatgaaaatcatgtgaaaacttt
catgcaatgttcaaatcttaaataatgtcaactattttttgcttgaagaa
actctgaaaatgtaaaaatgtagaaagcttttcatgacacctttttactt
gttcacccttaaatgttacaagatgaagacaagttgggaagtgaggagat
attattgtgtaacacattcattgagacagaataatccatttcaaaaggaa
actatttaaggtctttaatgcagtcctcaaaatatctaataaaactggta
acattctgtatattttaattcaatgagccaattgagaaaaattatacttt
aaaagaatatctgggcaactgagccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146659610_146660660
seq2: B6Ng01-302K05.b_47_1187 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCTGAAGAGCATTCAGTTCTAGGAACTTGCAAGTTCCAAGTGAATGTCCA  50

seq1  --------------------------------------CCTG-AAGA-GC  10
                                            |||| |||| ||
seq2  TGAGTCACTATGGTGTGTACTGAGACCGACATTGGTTCCCTGAAAGAGGC  100

seq1  AGCCAGT-GCTCTTAACCACCAAGCCATCTATCCAGATCCTAGTTCTTCT  59
      ||||||| ||||||||||||||   |||||||||||||||||||   |||
seq2  AGCCAGTGGCTCTTAACCACCA--GCATCTATCCAGATCCTAGT--CTCT  146

seq1  CTTTAAAATGTGGCTGGCAAAAAGCATCCTTGCTTCAAGTGGTGGAGAAT  109
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  CTTTAAAATGTGGCTGGCAAAAAGCAAACCTGCTTCAAGTGGTGGAGAAT  196

seq1  TAAAT-ACAAC-TTTTTATTTCTAAAGCATTTGGAAAAGTGCCTGGCCTT  157
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAACTTTTTTATTTCTAAAGCATTTGGAAAAGTGCCTGGCCTT  246

seq1  TCTTCTTGATGCTAAGGAGCAAATGCAGTATTAGCTGTGAGGTGGGTTCT  207
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGATGCTAAGGAGCAAATGCAGTATTAGCTGTGAGGTGGGTTCT  296

seq1  GATCACTGCATACTGTACACAACTGGTGGTTTGTAAATCAAAGCTGGGGG  257
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGCATACTGTACACAACTGGTGGTTTGTAAATCAAAGCTGGGGG  346

seq1  CAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCTTCCTTTGTGTT  307
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCTTCCTTTGTGTT  396

seq1  TCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTCAAACTGACTAT  357
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTCAAACTGACTAT  446

seq1  GTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTTCCACCTCACAA  407
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTTCCACCTCACAA  496

seq1  ATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGGGTCT  457
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGGGTCT  546

seq1  GAGCTCTGAATGCAAGGTTTGTGGTACCAGGCTAGCACATTCCCAGCCTG  507
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  GAGCTCTGAATGTAAGATTTGTGGTACCAGGCTAGCACATTCCCAGCCTG  596

seq1  AGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATTGAAAACATATT  557
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATTGAAAACATATT  646

seq1  ATTTTTTTGTATAAGGGTGTTTTCGCCTACATGTGTATCTGTGCTCCATC  607
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTATAAGGGTGTTTTCGCCTACATGTGTATCTGTGCTCCATC  696

seq1  ACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACATTGTACTTCCT  657
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACATTGTACTTCCT  746

seq1  GGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCTGGGAATTCAAC  707
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCTGGGAATTCAAC  796

seq1  CCTGCTCCACAAGTGCAGCAGAGTGTTTTTAATTACTGAGCTGCCTCCCC  757
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCACAAGTGCAGCAGAGTGTTTTTAATTACTGAGCTGCCTCCCC  846

seq1  AAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATATAAACTGGCAAC  807
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATATAAACTGGCAAC  896

seq1  ATATCCTTGGCAACCTTACTAAAACTGTGATATAGCTCTAAATGTCACAC  857
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATCCTTGGCAACCTCACTAAAACTGTGATATAGCTCTAAATGTCACAC  946

seq1  AGGATGAGCAATGATAAATACTTACAAAGTTT-AAAAAAAAAAAAAGAAA  906
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGATGAGCAATGATAAATACTTACAAAGTTTAAAAAAAAAAAAAAGAAA  996

seq1  AAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCCTCTC  956
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCCTCTC  1046

seq1  CTGTCCTCTGCAGCTACCCGCACTTGTGTGTGTGTGTGTGGCCTGCGTAC  1006
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTGCAGCTACCCGCACTTGTGTGTGTGTGTGTGGCCTGCGTAC  1096

seq1  TGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTGAATTC  1051
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTGAATTC  1141

seq1: chr4_146553756_146554752
seq2: B6Ng01-302K05.g_94_1091

seq1  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100

seq1  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150

seq1  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200

seq1  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250

seq1  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300

seq1  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTAGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGAT  350

seq1  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400

seq1  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450

seq1  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500

seq1  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550

seq1  AGG-CAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  599
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  600

seq1  TCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATTA  650

seq1  TGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTC  700

seq1  AACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCT  750

seq1  TTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAGA  800

seq1  CAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTCATTGAGACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTCATTGAGACAG  850

seq1  AAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATGCAGTCCTA  899
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -AATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATGCAGTCCTC  899

seq1  AAAATATCTAATAAAACTGGTAACATTCTGTGTA-TTTAATTCAAATGAG  948
      ||||||||||||||||||||||||||||||| || |||||||| ||||||
seq2  AAAATATCTAATAAAACTGGTAACATTCTGTATATTTTAATTC-AATGAG  948

seq1  CCAATTGAGAAAAATTATAC-TTAAAAGAATATCTGGCAAACTGAGCCAC  997
      |||||||||||||||||||| ||||||||||||||||  |||||||||||
seq2  CCAATTGAGAAAAATTATACTTTAAAAGAATATCTGGGCAACTGAGCCAC  998