BAC Information

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BAC

Clone NameB6Ng01-305C08
Chromosome4 (Build37)
Map Location 68,122,362 - 68,123,576
singlet/doubletsinglet
Overlap genenone
Upstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C08.bB6Ng01-305C08.g
ACCGA098511GA098512
length1,210931
definitionB6Ng01-305C08.b B6Ng01-305C08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaagaataaataaaaatgcatgacaaaataagacaaagtagc
agagtgatggttgcaaaaccaaggatgtttgtaggaggtattatgttcac
agtttattacttattgtaaatagtttcagaaataaatataaaaatgagaa
tataactatcttaatatgtgtagcatatattattagaatagaatcttaac
atcttttgtttgctgtttcatttgccaagctttgttattgtgtaaagttt
gtttgtttgtttgtttgtttatatgtctcacctcaagaacctgctatcta
gcatgagcatcttgggatttggtacagttctgctctggaatggtatatct
ctaattttcttcatttcttgattatctacttcatcagaggttgtcccaaa
ctcaaatataaattccacagtgtcagaggctttgttgggtttctatcatg
cttctacaacttcatgttgtgtctgtacattgtatgtatccagaaatact
gaactcattcaatttggtggtaagaaattgtgcttcccattctaaaaaga
agcaaaatgagtgatttgagacttgcttatggctagaaaataatagagtg
gggcatggtgccagttcctctaatttctagccacatgctttctcccactt
ggtgcaggtctgccactaatgtaattggctcagtgcacagagccagcatg
ggtctgcatagagctgtatccatgtaacttgcccagcaatggatctgagt
cctgattcttaagggaaaaattgcagcataagaacaatggcttcttattt
atctttttgagagctccattttgggaagtgttaacaggaagaaaataaat
gactctagtgtacacactggaattataaacgggtcttcaattccagagtg
gcctttatttcatttaaccatgtggagatcatagccttagacctgcacca
gggtttagagaccatctccagaactgtttaatgcacatctataatacttg
gggtgggatccagagatcaataagccctgtgatgctttaataccttagag
tcttgaagaagttggtgcccatttgctctgtagaagtacaatccttaaga
tgggagaaagacctttggggcctattaacagtaagataatgaataatcag
aatttcagcctgcatgttgccatgggtattccaggcatgccaaataacac
cccccttttt

gccagcctggtcttcagagtgagttccaggacagccagtgctacacagag
aaaccctgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacactaaa
aaataaataaataataataaaaaaaaacagaaagaactggggagagtacc
ttctgtttctactttgtggaagagtttgaggagtatttgtactaggtctt
ctattttgaaggtttgatagaactctgcactaaacacatcaggtcctggg
cttatttatttatttgtttattttttggttgggagactattaatgacagt
ttctatttctgtaggagatatgggactgtttagatcattaatctgctctt
gatttatctttgtttacctggtatctgtctagaaaatcgtcagtttcatc
caggtttccagttttgttgagtgtagatttttgcagtaggatctgataat
ttttttggatttcttcaggttctgtagttatgtcttccttttcatttctg
attttgttaattcagatactgtcccggtcctctttagttagtctggctaa
gagttagctatatcttggtcctgtcagctaaatctttttggcatatgcaa
tagtgtctgggtttgatggttgtttatgggagagatctctggatggtcct
ttcttccgtctcagctctgaactttgtctctgttactcctaccatgggta
ttttgtcccccattctaagaaagatccaagtatccacactttggactttc
ttcttcttgagtttcatgtgttttgcaaattgcatcttgggtattctatg
tttcttggctaaatatccaactcatcagtgagtgcatatcatatgtgttc
tttttgtgattgggttacctcactcaggatgacatcctccagatccatcc
atttgcctaagaatttcataaaatttattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68122362_68123576
seq2: B6Ng01-305C08.b_44_1253

seq1  GAATTCTCTAAGAATAAATAAAAATGCATGACAAAATAAGACAAAGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAATAAATAAAAATGCATGACAAAATAAGACAAAGTAGC  50

seq1  AGAGTGATGGTTGCAAAACCAAGGATGTTTGTAGGAGGTATTATGTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGGTTGCAAAACCAAGGATGTTTGTAGGAGGTATTATGTTCAC  100

seq1  AGTTTATTACTTATTGTAAATAGTTTCAGAAATAAATATAAAAATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTACTTATTGTAAATAGTTTCAGAAATAAATATAAAAATGAGAA  150

seq1  TATAACTATCTTAATATGTGTAGCATATATTATTAGAATAGAATCTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATCTTAATATGTGTAGCATATATTATTAGAATAGAATCTTAAC  200

seq1  ATCTTTTGTTTGCTGTTTCATTTGCCAAGCTTTGTTATTGTGTAAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTTTGCTGTTTCATTTGCCAAGCTTTGTTATTGTGTAAAGTTT  250

seq1  GTTTGTTTGTTTGTTTGTTTATATGTCTCACCTCAAGAACCTGCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTATATGTCTCACCTCAAGAACCTGCTATCTA  300

seq1  GCATGAGCATCTTGGGATTTGGTACAGTTCTGCTCTGGAATGGTATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGCATCTTGGGATTTGGTACAGTTCTGCTCTGGAATGGTATATCT  350

seq1  CTAATTTTCTTCATTTCTTGATTATCTACTTCATCAGAGGTTGTCCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTCTTCATTTCTTGATTATCTACTTCATCAGAGGTTGTCCCAAA  400

seq1  CTCAAATATAAATTCCACAGTGTCAGAGGCTTTGTTGGGTTTCTATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATAAATTCCACAGTGTCAGAGGCTTTGTTGGGTTTCTATCATG  450

seq1  CTTCTACAACTTCATGTTGTGTCTGTACATTGTATGTATCCAGAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACAACTTCATGTTGTGTCTGTACATTGTATGTATCCAGAAATACT  500

seq1  GAACTCATTCAATTTGGTGGTAAGAAATTGTGCTTCCCATTCTAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTCAATTTGGTGGTAAGAAATTGTGCTTCCCATTCTAAAAAGA  550

seq1  AGCAAAATGAGTGATTTGAGACTTGCTTATGGCTAGAAAATAATAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGAGTGATTTGAGACTTGCTTATGGCTAGAAAATAATAGAGTG  600

seq1  GGGCATGGTGCCAGTTCCTCTAATTTCTAGCCACATGCTTTCTCCCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTGCCAGTTCCTCTAATTTCTAGCCACATGCTTTCTCCCACTT  650

seq1  GGTGCAGGTCTGCCACTAATGTAATTGGCTCAGTGCACAGAGCCAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGTCTGCCACTAATGTAATTGGCTCAGTGCACAGAGCCAGCATG  700

seq1  GGTCTGCATAGAGCTGTATCCATGTAACTTGCCCAGCAAATGGATCTGAG  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTCTGCATAGAGCTGTATCCATGTAACTTGCCCAGC-AATGGATCTGAG  749

seq1  TCCTGATTCTTAAGGGAAAAATTGCAGCATAAGAACAATGGCTTCTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTCTTAAGGGAAAAATTGCAGCATAAGAACAATGGCTTCTTATT  799

seq1  TATCTTTTTGAGAGCTCCATTTTGGGAAGTGTTAACAGGAAGAAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTGAGAGCTCCATTTTGGGAAGTGTTAACAGGAAGAAAATAAA  849

seq1  TGACTCTAGTGTACACACTGGAATTATAAACGGGTCTTCAATTCCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGTGTACACACTGGAATTATAAACGGGTCTTCAATTCCAGAGT  899

seq1  GGCCTTTATTTCATTTAACCATGTGGAGATCATAGCCTTAGACCTGCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTATTTCATTTAACCATGTGGAGATCATAGCCTTAGACCTGCACC  949

seq1  AGGGTTTAGAGACCATCTCCAGAACTGTTTAATGCACATCTATAATACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAGAGACCATCTCCAGAACTGTTTAATGCACATCTATAATACTT  999

seq1  -GGGTGGGATCCAGAGATCAATAAGCCCTGTGATGCTTTAATACCTTAGA  1049
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGATCCAGAGATCAATAAGCCCTGTGATGCTTTAATACCTTAGA  1049

seq1  GTC-TGAAGAAGTTTGGTGCCCA-TTGCTCTGTTAAGAAGGTACAACCCC  1097
      ||| |||||||| |||||||||| |||||||||  |||| |||||| || 
seq2  GTCTTGAAGAAG-TTGGTGCCCATTTGCTCTGT--AGAA-GTACAATCCT  1095

seq1  TAAGAT-GGAGAAAGGACACTTGGGGGCTATAAACA-TTAGATATAGAAT  1145
      |||||| ||||||| |||  |||||| |||| |||| | |||||  ||||
seq2  TAAGATGGGAGAAA-GACCTTTGGGGCCTATTAACAGTAAGATAATGAAT  1144

seq1  AAATTCAGAATTTCAGCCTGCATG-TGGCATGTGTGTAATACAAAGCATG  1194
      ||  |||||||||||||||||||| || |||| ||   || | | |||||
seq2  AA--TCAGAATTTCAGCCTGCATGTTGCCATGGGT---ATTCCAGGCATG  1189

seq1  CAAAAATACACCCCCCCTTTT  1215
      | |||  ||||||||| ||||
seq2  CCAAATAACACCCCCCTTTTT  1210


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