BAC Information

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BAC

Clone NameB6Ng01-306B03
Chromosome4 (Build37)
Map Location 133,832,023 - 133,968,496
singlet/doubletdoublet
Overlap genePdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Upstream geneD4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1
Downstream geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306B03.bB6Ng01-306B03.g
ACCGA099202GA099203
length1,1561,123
definitionB6Ng01-306B03.b B6Ng01-306B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,832,023 - 133,833,184)(133,967,376 - 133,968,496)
sequence
gaattctaattcacagataaaaatctttcaaaataaattataactggggc
tagacatttagctcagtgctaacacctttgtgtagcacaagcaaggccct
gggtatgatcccagcaccaacgaaaacaaaagataattactcattatttt
caaggaggcaggatcaaaagctatgtgctcaggacaccacagcttcaagt
gcacaggtatttgtagagccaagaactgttggcacacatcacatatcaat
ctgatgagggccaagtcaatggtaatccattataatgagactttttctaa
tttcttgtaactcaatccacgggtcagatctgtgtcaacttggtgaccca
cagggtcaattaccatgaagatccaggacatttctacctcttatttctga
aagaattcttttagctaagtctgcaagtgatattatgtgtatgtgacttt
ttcatttgataagattttttttgttaactaaagcctttcggttcacgttt
ttacacttccagattaattcagtctaggcgttttacatatttcatttttt
ttgtgaggtttatcttttatcaccttctgaacacactaatggatctgttg
attttgtgatggcagggattgaatccagagccttgtacatgccaggcaag
cgctcttcactgaaccacagccagacctaatgtgacggtatggcggttca
agcactgaggggacaaggagagttgctgataacggcaatatcctgatagt
ctattgccttttgcatcttaacgcttaaaaagatccccgtggggttagtg
gtaggctacttccctcacacctaaggcccaaggttctaccccagcaccgg
aggtgggcagctagtgccttataaagcctcacctggatataatggtagct
tctaattcatcctaaagactggtgttctggtttaagaaagaatccctttc
cttaatgttcctggattagcaagacaatctggaaggcaacatgcagttag
acttcccttcaggagtgagtctcttgctttctgacagatgccaggtgaca
tatgaaacgacaacttttctacttgaaagcagttgaggcatagaatttat
tccaattgcatcggtctcctcactttgaggaagcgaccagtatttgtgac
tgtgat
gaattctttaatgggagttttcaaaatgagcttcgctctgggaggagagg
actggggaccgccaccagggcctcgttctcggcgatgagccaaacgtctg
caaagtcacagctggcaggagctcagaaaataagtcaacctgcagaccta
tgggagtcctggcagcgacagggatgagctggcccctctgagagcaagtc
ccagggactgactggcagctctagggccccactcttcctacccttttgaa
ccaatcagcacccttgccacctaagcaagcttaagggggatttctccagc
aactgcaagagtcctgtgattcatagaacttatctattcccaccgatatg
ctgagctcagaccgtgcttgcggtggactgaaggttcttgttaatgttct
ggtcctcatggggacactattggaaaatggagtcttcggagggtgggacc
cagtgggaggtctttaagtcactgaagaactgccctgaaaagggactatg
ggatgctaacaccactcccccccccaaacacccctcccccgcacctccca
tcatccgggtgcctcaccagaggcccaaagcaacaggtctgcccgacctt
gggttgcaatccctagaaggctgagctaaagtccctgctcggcagtgtgt
gactctgccacctggcacaagcctacctgaggattcctgacgtggaactc
cttctccccttccttgatgcgacggaaggggagccactcctcctccagag
attcagcgggagagctctcctgggaggtcggcttgcagaagtaggtggcc
gcagctgactggtccctgaaccatgcacgcgtgccatcggagagaaagaa
agaaaagaagacaatgtgagggtgcttctcccgtgtacccatgtctccct
ttccaaccatgacacgccgggctctccacttggctggtggataaggagat
cacgggcacacaaggggagcaaaaatatcacgtcaaggaacaggcctgga
tgtgagcccagagtcagcttgtgtccactcaggcagctaatggaacatct
ttcggcccttgatgttctacctttaaatgggttataattattggctttgc
acgtcattagtaataatcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133832023_133833184
seq2: B6Ng01-306B03.b_45_1200

seq1  GAATTCTAATTCACAGATAAAAATCTTTCAAAATAAATTATAACTGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCACAGATAAAAATCTTTCAAAATAAATTATAACTGGGGC  50

seq1  TAGACATTTAGCTCAGTGCTAACACCTTTGTGTAGCACAAGCAAGGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTAGCTCAGTGCTAACACCTTTGTGTAGCACAAGCAAGGCCCT  100

seq1  GGGTATGATCCCAGCACCAACGAAAACAAAAGATAATTACTCATTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGATCCCAGCACCAACGAAAACAAAAGATAATTACTCATTATTTT  150

seq1  CAAGGAGGCAGGATCAAAAGCTATGTGCTCAGGACACCACAGCTTCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGCAGGATCAAAAGCTATGTGCTCAGGACACCACAGCTTCAAGT  200

seq1  GCACAGGTATTTGTAGAGCCAAGAACTGTTGGCACACATCACATATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTATTTGTAGAGCCAAGAACTGTTGGCACACATCACATATCAAT  250

seq1  CTGATGAGGGCCAAGTCAATGGTAATCCATTATAATGAGACTTTTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGGGCCAAGTCAATGGTAATCCATTATAATGAGACTTTTTCTAA  300

seq1  TTTCTTGTAACTCAATCCACGGGTCAGATCTGTGTCAACTTGGTGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTAACTCAATCCACGGGTCAGATCTGTGTCAACTTGGTGACCCA  350

seq1  CAGGGTCAATTACCATGAAGATCCAGGACATTTCTACCTCTTATTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAATTACCATGAAGATCCAGGACATTTCTACCTCTTATTTCTGA  400

seq1  AAGAATTCTTTTAGCTAAGTCTGCAAGTGATATTATGTGTATGTGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTTTTAGCTAAGTCTGCAAGTGATATTATGTGTATGTGACTTT  450

seq1  TTCATTTGATAAGATTTTTTTTGTTAACTAAAGCCTTTCGGTTCACGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGATAAGATTTTTTTTGTTAACTAAAGCCTTTCGGTTCACGTTT  500

seq1  TTACACTTCCAGATTAATTCAGTCTAGGCGTTTTACATATTTCATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTCCAGATTAATTCAGTCTAGGCGTTTTACATATTTCATTTTTT  550

seq1  TTGTGAGGTTTATCTTTTATCACCTTCTGAACACACTAATGGATCTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGTTTATCTTTTATCACCTTCTGAACACACTAATGGATCTGTTG  600

seq1  ATTTTGTGATGGCAGGGATTGAATCCAGAGCCTTGTACATGCCAGGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGATGGCAGGGATTGAATCCAGAGCCTTGTACATGCCAGGCAAG  650

seq1  CGCTCTTCACTGAACCACAGCCAGACCTAATGTGACGGTATGGCGGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCACTGAACCACAGCCAGACCTAATGTGACGGTATGGCGGTTCA  700

seq1  AGCACTGAGGGGACAAGGAGAGTTGCTGATAACGGCAATATCCTGATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGGGGACAAGGAGAGTTGCTGATAACGGCAATATCCTGATAGT  750

seq1  CTATTGCCTTTTGCATCTTAACGCTTAAAAAGATCCCCGTGGGGTTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCCTTTTGCATCTTAACGCTTAAAAAGATCCCCGTGGGGTTAGTG  800

seq1  GTAGGCTACTTCCCTCACACCTAAGGCCCAAGGTTCTACCCCAGCACCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTACTTCCCTCACACCTAAGGCCCAAGGTTCTACCCCAGCACCGG  850

seq1  AGGTGGGCAGCTAGTGCCTTATAAAGCCTCACCTGGATATAATGGTAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCAGCTAGTGCCTTATAAAGCCTCACCTGGATATAATGGTAGCT  900

seq1  TCTAATTCATCCTAAAGACTGGTGTTCTGGTTTAAGAAAGAAT-CCTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTAATTCATCCTAAAGACTGGTGTTCTGGTTTAAGAAAGAATCCCTTTC  950

seq1  CTTAATGTTCCTGGATTAGCAAGAACAATCTGG-AGGCAACCATGCAGTT  998
      ||||||||||||||||||||||| ||||||||| |||||| |||||||||
seq2  CTTAATGTTCCTGGATTAGCAAG-ACAATCTGGAAGGCAA-CATGCAGTT  998

seq1  AGACTTTCCCTTCAGGAGTTGAGTCTCTTGCTTTCTGACAGATGCCAGGT  1048
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAC-TTCCCTTCAGGAG-TGAGTCTCTTGCTTTCTGACAGATGCCAGGT  1046

seq1  GACCATATGAAAACGACAACTTTTCTACTTGAAAAGCAGTTGAGGGCATA  1098
      || |||||| ||||||||||||||||||||| ||||||||||| ||||||
seq2  GA-CATATG-AAACGACAACTTTTCTACTTG-AAAGCAGTTGA-GGCATA  1092

seq1  GAATTTTATCCATTTGCATC-GTCT-CTCACTTTGGAAGAGAGCGACCAG  1146
      ||||||  |||| ||||||| |||| |||||||||  ||  |||||||||
seq2  GAATTTATTCCAATTGCATCGGTCTCCTCACTTTG--AGGAAGCGACCAG  1140

seq1  TATTTGTGACAGTGAT  1162
      |||||||||| |||||
seq2  TATTTGTGACTGTGAT  1156

seq1: chr4_133967376_133968496
seq2: B6Ng01-306B03.g_67_1189 (reverse)

seq1  CCAATGTATTATTACTAATGACCGTGCAAAACC-ATTATTAT-ACCCATT  48
      |||||| |||||||||||||| |||||||| || || ||||| |||||||
seq2  CCAATG-ATTATTACTAATGA-CGTGCAAAGCCAATAATTATAACCCATT  48

seq1  TAAAAGGGTAGAACAACAA-GGCCGAAAGATG-TCCATTAGCTGCCTGGA  96
      ||||  ||||||||| ||| |||||||||||| |||||||||||||||  
seq2  TAAA--GGTAGAACATCAAGGGCCGAAAGATGTTCCATTAGCTGCCTG--  94

seq1  AGT-GACAC-AGCTGACTCTGGGCTCACATCCAGGCCTGTCCCTGACCGT  144
      ||| ||||| |||||||||||||||||||||||||||||| |||   |||
seq2  AGTGGACACAAGCTGACTCTGGGCTCACATCCAGGCCTGTTCCTTGACGT  144

seq1  GATTATTTTGCTCCCCTTTGTGTGCCCGTGATCTCCTTATCCACCAGCCA  194
      |||  ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATATTTTTGCTCCCC-TTGTGTGCCCGTGATCTCCTTATCCACCAGCCA  193

seq1  AGTGGAGAGCCC-GCGTGTCATGGTTGG-AAGGGAGACATGGGTACACGG  242
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AGTGGAGAGCCCGGCGTGTCATGGTTGGAAAGGGAGACATGGGTACACGG  243

seq1  GAGAAGCACCCTCACATTGTCTTC-TTTCTTTCTTTCTCTCCGATGGCAC  291
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGAAGCACCCTCACATTGTCTTCTTTTCTTTCTTTCTCTCCGATGGCAC  293

seq1  GCGTGCATGGTTCAGGGACCAGTCAGCTGCGGCCACCTACTTCTGCAAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCATGGTTCAGGGACCAGTCAGCTGCGGCCACCTACTTCTGCAAGC  343

seq1  CGACCTCCCAGGAGAGCTCTCCCGCTGAATCTCTGGAGGAGGAGTGGCTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTCCCAGGAGAGCTCTCCCGCTGAATCTCTGGAGGAGGAGTGGCTC  393

seq1  CCCTTCCGTCGCATCAAGGAAGGGGAGAAGGAGTTCCACGTCAGGAATCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCGTCGCATCAAGGAAGGGGAGAAGGAGTTCCACGTCAGGAATCC  443

seq1  TCAGGTAGGCTTGTGCCAGGTGGCAGAGTCACACACTGCCGAGCAGGGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGGCTTGTGCCAGGTGGCAGAGTCACACACTGCCGAGCAGGGAC  493

seq1  TTTAGCTCAGCCTTCTAGGGATTGCAACCCAAGGTCGGGCAGACCTGTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCAGCCTTCTAGGGATTGCAACCCAAGGTCGGGCAGACCTGTTG  543

seq1  CTTTGGGCCTCTGGTGAGGCACCCGGATGATGGGAGGTGCGGGGGAGGGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCCTCTGGTGAGGCACCCGGATGATGGGAGGTGCGGGGGAGGGG  593

seq1  TGTTTGGGGGGGGGAGTGGTGTTAGCATCCCATAGTCCCTTTTCAGGGCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGGGGGGGAGTGGTGTTAGCATCCCATAGTCCCTTTTCAGGGCA  643

seq1  GTTCTTCAGTGACTTAAAGACCTCCCACTGGGTCCCACCCTCCGAAGACT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAGTGACTTAAAGACCTCCCACTGGGTCCCACCCTCCGAAGACT  693

seq1  CCATTTTCCAATAGTGTCCCCATGAGGACCAGAACATTAACAAGAACCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCAATAGTGTCCCCATGAGGACCAGAACATTAACAAGAACCTT  743

seq1  CAGTCCACCGCAAGCACGGTCTGAGCTCAGCATATCGGTGGGAATAGATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCGCAAGCACGGTCTGAGCTCAGCATATCGGTGGGAATAGATA  793

seq1  AGTTCTATGAATCACAGGACTCTTGCAGTTGCTGGAGAAATCCCCCTTAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATGAATCACAGGACTCTTGCAGTTGCTGGAGAAATCCCCCTTAA  843

seq1  GCTTGCTTAGGTGGCAAGGGTGCTGATTGGTTCAAAAGGGTAGGAAGAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTAGGTGGCAAGGGTGCTGATTGGTTCAAAAGGGTAGGAAGAGT  893

seq1  GGGGCCCTAGAGCTGCCAGTCAGTCCCTGGGACTTGCTCTCAGAGGGGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTAGAGCTGCCAGTCAGTCCCTGGGACTTGCTCTCAGAGGGGCC  943

seq1  AGCTCATCCCTGTCGCTGCCAGGACTCCCATAGGTCTGCAGGTTGACTTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCCCTGTCGCTGCCAGGACTCCCATAGGTCTGCAGGTTGACTTA  993

seq1  TTTTCTGAGCTCCTGCCAGCTGTGACTTTGCAGACGTTTGGCTCATCGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGCTCCTGCCAGCTGTGACTTTGCAGACGTTTGGCTCATCGCC  1043

seq1  GAGAACGAGGCCCTGGTGGCGGTCCCCAGTCCTCTCCTCCCAGAGCGAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGAGGCCCTGGTGGCGGTCCCCAGTCCTCTCCTCCCAGAGCGAAG  1093

seq1  CTCATTTTGAAAACTCCCATTAAAGAATTC  1121
      ||||||||||||||||||||||||||||||
seq2  CTCATTTTGAAAACTCCCATTAAAGAATTC  1123