BAC Information

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BAC

Clone NameB6Ng01-308I15
Chromosome4 (Build37)
Map Location 146,698,246 - 146,822,806
singlet/doubletdoublet
Overlap geneLOC666581, EG666588, LOC627701
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I15.bB6Ng01-308I15.g
ACCGA101013GA101014
length1,141434
definitionB6Ng01-308I15.b B6Ng01-308I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,821,393 - 146,822,806)(146,698,246 - 146,698,703)
sequence
gaattctgatgctcagaacagatacccaaaacaaacaaaaacttagataa
aatgtccttggctcaaaccacaaaccgtagaggtatcctataaggagcac
aatttatttgatattcaagacaaagaattgaaaacccacagtcatgatca
aaagcattaaagtttgtaaaccatgtgaatccactcagacaggaacaaaa
tgaatcatgagaaagaaaataataccagatgcctgaaggaaatgaggaca
atgtaaaatattaaaattgagttcaataggtgcttaaaaatgccaacaaa
aaaaaatcgtgaagagaaaatacagtaaggaaaataaaaataatacagaa
agaaagaaagaaagaaagaaagaaagaaagagagaaagaaagaaagagag
aaagagagaaagaaagaaagaaaactagaacaaaattacaatacatactg
cactgtttgttgataaatggtttcctgattgttccctgtaacactctatg
acacccatgcatatcagcataagtgggggaaaggagactcgagatttacc
caagtctcattagactgttgctaggaagtcaactcttttcatgattataa
tgagttccagaattctcatgtgacctcttaggttcaaaacctgttgtgat
gattatgagaggttaaaatggattctagctcagcatggaggtgagacctc
agaagcacaggcccaaacctgggggtctggctttaaagaacagggttctg
tgcccatggacacctttcagatggcagggctacttgtttccctttgggat
gagtgttaatttttccaatattgtacatatgcaaaaaaaaaaaaatgaaa
aaaagtcacaagttaattgaatcctcatatgtgaatagattaaacatact
ggtgattaataatgcatctgagttgagttaaaggaaaaaaataaaaagcc
ctttccctcagagcatttaactaagtgtgagtccaaagttgaattctcta
cttcatgttccctgtgcctttcatcctctggtgtgtctgttcagtagtta
atctgtaacttcctgaagctgcttgtatagctctccctttcctgtctgct
tttgtcttcaaaggtggagtctattctggggtaatctgttg
tctggaatttcattaagtttgtttctgccttcttgaattcctgtgcttgt
tccctctttatgacatttgtccacattgaatggtgttcatattatgtttt
gacttttgtctcttgagtttgtttcataattcattttgtcatgagaattg
gtattggtttagtgatttaggttagggaaattttattaacattgtcaaat
tgctttagctacagcctctcaattttcttttgctgtgtgtcatttaggtc
aggtgacagggatttccatatgaggtgttgtgaataaactttgagaatct
agggtggtgggaggaactaggttacagttacagtctaaatatatcattgc
ttactttcatgactgcactttgtcaagattcctggtatcattttgctttt
aatgtttatatgtgtgtgtgtgtgtgtgtgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146821393_146822806
seq2: B6Ng01-308I15.b_50_1186 (reverse)

seq1  CAACAGATTAC------ACAGACACCAAC-ATGGAGACAAAAGGCAGACA  43
      |||||||||||      | |||| ||| |  || |||||||| |||||||
seq2  CAACAGATTACCCCAGAATAGACTCCACCTTTGAAGACAAAA-GCAGACA  49

seq1  -GAAAGGGAGAGCTATACAAGCAGCCTTCAGGAAGTTACAGATTTAAACT  92
       ||||||||||||||||||||||| |||||||||||||||||||  ||||
seq2  GGAAAGGGAGAGCTATACAAGCAG-CTTCAGGAAGTTACAGATT--AACT  96

seq1  AACTGAACAGATACA-CAGAGGATGGAA-GCACAGGGAACATGAAGTAGA  140
       |||||||||| ||| ||||||||| || |||||||||||||||||||||
seq2  -ACTGAACAGACACACCAGAGGATGAAAGGCACAGGGAACATGAAGTAGA  145

seq1  GAATTCAACTTTGTACTCACACTCAGTTAAATGCCTCTGAGGAAAAGG--  188
      ||||||||||||| ||||||||| ||||||||| |||||||| |||||  
seq2  GAATTCAACTTTGGACTCACACTTAGTTAAATG-CTCTGAGGGAAAGGGC  194

seq1  CTTTCATTTCTTTCC-TTAACTCAACACAGATGCATTATTAATCACTAGT  237
       ||| |||| ||||| |||||||||| ||||||||||||||||||| |||
seq2  TTTTTATTTTTTTCCTTTAACTCAACTCAGATGCATTATTAATCACCAGT  244

seq1  ATGTTTAATCTATTCACATATGAGGAATCAATTAGCTTGTGAC-------  280
      |||||||||||||||||||||||||| ||||||| ||||||||       
seq2  ATGTTTAATCTATTCACATATGAGGATTCAATTAACTTGTGACTTTTTTT  294

seq1  ------TTTTTTTTAGCATAAGTACAATATGGGAAAAACTAAAATTCACC  324
            |||||||| ||||| ||||||||| ||||||| ||| | ||| |
seq2  CATTTTTTTTTTTTTGCATATGTACAATATTGGAAAAATTAACACTCATC  344

seq1  CCAATGGGAAACAAGTAGCCCTGTCATCTGAAAGGTGTCCATGGGCACAG  374
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAAAGGGAAACAAGTAGCCCTGCCATCTGAAAGGTGTCCATGGGCACAG  394

seq1  AACCCTGTTCTTTAAAGTCAGACCCCCAGGTTTGGGTTTGTGCTTCTGAG  424
      ||||||||||||||||| ||||||||||||||||||  ||||||||||||
seq2  AACCCTGTTCTTTAAAGCCAGACCCCCAGGTTTGGGCCTGTGCTTCTGAG  444

seq1  CTCTCACCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATC  474
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACCTCCATGCTGAGCTAGAATCCATTTTAACCTCTCATAATCATC  494

seq1  ACAACAGGTTTTGAACCTAAGAGGTCACATGAGAATTCTGGAACTCATTA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGGTTTTGAACCTAAGAGGTCACATGAGAATTCTGGAACTCATTA  544

seq1  TAATCATGAAAACAGTTGACTTCCTAGCAATAGTCTAATGAGACTTGGGT  574
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TAATCATGAAAAGAGTTGACTTCCTAGCAACAGTCTAATGAGACTTGGGT  594

seq1  AAATCTCGGTTCTCCTTTCCCCCACTTATACTGACATGCATGGGTGTC--  622
      ||||||||  ||||||||||||||||||| |||| |||||||||||||  
seq2  AAATCTCGAGTCTCCTTTCCCCCACTTATGCTGATATGCATGGGTGTCAT  644

seq1  AGAGTGTTACAGGGAACAATC---TAACCATGTATGAACAAACAGTGCAG  669
      |||||||||||||||||||||    |||||| ||| ||||||||||||||
seq2  AGAGTGTTACAGGGAACAATCAGGAAACCATTTATCAACAAACAGTGCAG  694

seq1  TATGTATTGTAATTTTGTTCCTGTTTTCTTTCTTTCTTTCTTTCTTTCTT  719
      ||||||||||||||||||||  ||||||||||||||||||| ||||||| 
seq2  TATGTATTGTAATTTTGTTCTAGTTTTCTTTCTTTCTTTCTCTCTTTCTC  744

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  769
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  794

seq1  TTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCT  819
                                                        
seq2  --------------------------------------------------  794

seq1  CTCTCTCTCTCCCTCTCTCTCTTTCTCTCTCTTTCTTCCTTCTTACTTCC  869
                                                        
seq2  --------------------------------------------------  794

seq1  TTTCCTTACTTTTTTTTTTTTTTTGACAAAGATCAGGACAGTTTTTCGAA  919
                                                        
seq2  --------------------------------------------------  794

seq1  GGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATAATATTGTGCC  969
                                                        
seq2  --------------------------------------------------  794

seq1  TTGACCTAACATCATTTTAATTCACCATTTTCTTTGATTGAGGCATCCAC  1019
                                                        
seq2  --------------------------------------------------  794

seq1  CTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCACAGGTTCTCT  1069
                                                        
seq2  --------------------------------------------------  794

seq1  ATGTATCAATTTTATTTGCCTCAGTGCATTTTCTCTTCAGGATTTTTCTT  1119
       ||||| | |||||||| ||| | || |||||||||||| ||||||| ||
seq2  -TGTATTATTTTTATTTTCCTTACTGTATTTTCTCTTCACGATTTTT-TT  842

seq1  TTTTTAGCATTTCTAACCACCTATTGAACTCAATTTTAATATTTTATATT  1169
      || || |||||| ||| ||||||||||||||||||||||||||||| |||
seq2  TTGTTGGCATTTTTAAGCACCTATTGAACTCAATTTTAATATTTTACATT  892

seq1  GTCCTTATTTCCTTCAGGCATCTGGTATTATTTTCTTACCCAAGATTCAT  1219
      ||||| ||||||||||||||||||||||||||||||| | || |||||||
seq2  GTCCTCATTTCCTTCAGGCATCTGGTATTATTTTCTTTCTCATGATTCAT  942

seq1  TTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTTTAATGCCCTT  1269
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTTTAATGCTTTT  992

seq1  GATCATGACTGTGGGTTTTCAATTCTTTGTCTTGGGTATCACATAAATTG  1319
      ||||||||||||||||||||||||||||||||||  ||||| ||||||||
seq2  GATCATGACTGTGGGTTTTCAATTCTTTGTCTTGAATATCAAATAAATTG  1042

seq1  TGCTCCTTATTGGATACCTCTATGGTTTGTGGTTTGAGCCAAGGACATTT  1369
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TGCTCCTTATAGGATACCTCTACGGTTTGTGGTTTGAGCCAAGGACATTT  1092

seq1  TATCTACGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCATCAGA  1414
      |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCATCAGA  1137

seq1: chr4_146698246_146698703
seq2: B6Ng01-308I15.g_69_508

seq1  GAATTCTCTGGAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTCCTGT  50

seq1  GCTTGTTCCCTCTTTATGACATTTGTCCACATTGAATGGTGTTCAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTGTTCCCTCTTTATGACATTTGTCCACATTGAATGGTGTTCATATTA  100

seq1  TGTTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGA  150

seq1  GAATTGGTATTGGTTTAGTGATTTAGGTTAGGGAAATTTTATTAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTATTGGTTTAGTGATTTAGGTTAGGGAAATTTTATTAACATTG  200

seq1  TCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTGCTGTGTGTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTGCTGTGTGTCATT  250

seq1  TAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTGTGAATAAACTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTGTGAATAAACTTTGA  300

seq1  GAATCTAGGGTGGTGGGAGGAACTAGGTTACAGTTACAGTCTAAATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGGGTGGTGGGAGGAACTAGGTTACAGTTACAGTCTAAATATAT  350

seq1  CATTACTTACTTTCATGACTGCACTTTGTCAAGATTCCTGGTATCATTTT  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTACTTTCATGACTGCACTTTGTCAAGATTCCTGGTATCATTTT  400

seq1  GCTTTTAATGTTTATAAGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGTGT  449
      |||||||||||||||| ||||||||||||||||||||||           
seq2  GCTTTTAATGTTTATATGTGTGTGTGTGTGTGTGTGTGTC----------  440

seq1  GTGTGTGTC  458
               
seq2  ---------  440