BAC Information

Click to search

BAC

Clone NameB6Ng01-308N15
Chromosome4 (Build37)
Map Location 49,858,864 - 49,860,016
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308N15.bB6Ng01-308N15.g
ACCGA101247GA101248
length1,1011,150
definitionB6Ng01-308N15.b B6Ng01-308N15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaaactctaatggacaagaagcacctaaagaaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacatcataccagtcagaatgactaagatcaaaaactcaggtgacagc
agatgctggctaggatggagagaaagattaacactcctccattgatggtg
ggagtgcaagctggtacaaccactctggaaatctggtggttcctcagaaa
attgaacatagtattacccaaggacccagctataccactcctgggcatat
acccaaaagatgctccaacatataacaagggcactatattcatagcagcc
atattcataatagccagaagctgaaaacaacccagatgtttctcaacaga
ggattgcatacagaaaatgtagtacatttacacaatgcaatactactcag
ctattaaaaacaatgactgataaatgaatattagcccaaaggctcagaat
acccaaaatacaactcacagaccacatgaagctcaaaaagaaggatggcc
aaagtgtggatactttggccttcttagaagggggaacaaaataatcatgg
gaggaaatactgagacaaagggtggagcggacactgaagggaaggccata
cagagactgccccacttggggatccatcccatacacagtcaccaaaccca
gacactattgtggatgccaacaaatgcttgctgacaggagcctgatatag
ctgtcttgtgagaggctctctctgccagtgcctgacaaatacagaagtgg
atgattgcagtcaatcattggactgatcatagggtccccaatggaggagt
taaaaaaaggactgaaaggagctgatggggtttgccaccccatagtaaga
acaacaatatcaacccaccagaatccccagagctcccaaggactatacca
tcaacccaagaataccacatgatgggattaatggctccagctgattatgt
agcagagatgccttgtcagacatcatacgattagagcccttgtcttgtga
ggctgatgacccagtgtagggatgtctgggttgggaggtgattagaggtt
g
gagtcggtactgagagatctgaagcctaatgggtcacagggaccggttaa
aagccactgtgactttaaggagtatcccttggcgacaccactctaaaggg
tttttctagtccagagtattaaagcaagaattatttacacatctgatttc
ttcttgcttttctttggcagaggagcttatgcgtttttaaaggggtcttg
tttttttgattctcgggataaaaaacgtggattcaaagcgattcaagaag
ttaaagagctggccaccaggcctcacaactgcatttacatccccaggtcc
tttaagatggaaagagacaattgactcaagaaagttgtcctccaacgtgc
acccctgcgtggcaagattcacgtgctcacatccatcccagacataaaat
aaataaaatgcaataaaagtactttcagagcttaaaaagccttcaccagt
tgtccgtagtatatagaccaagagtgtccaggttgtagtttcttgtgagt
tatttcatttatacagcaacccaggggtcaatgagcctattatctaaact
ttctccccatttaataagtgacatcagaaaaaacgcaaaagggttaagga
aatcttatggatgccacacatattgcaaattgactactttttatgttaca
ggaatcattcatgaggagggtgggggagatgactacgtgactaacagcat
tggtgatcagcaatactgagtccaatatcacctctggagaactgtgacct
cggcaatttatttgacctgtccttgccctgttgtttggagctgctaaatt
actatgtaaatacatcaaacctttagctctaaaaagttgttttgattctt
gagtttaagtttccaccatgttttaaattttgggataatgaaactataga
caaataaaatttcttgagaacctggcaaagagagactcttttgtctcagc
acaaagtaagttttgtaagatggagttgcttcaggttaaaaaaactttcc
atcaattgggaagtaacgcttatgggggctaaatcagaatagaaagccct
gttcctcttctgagtcagagagaagatccaagctctgtcagccatctcct
tatcagattacacattgcttgaaaatcaagtatagtgctagaaatgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49858864_49860016
seq2: B6Ng01-308N15.g_76_1225

seq1  GAGTCGGTACTGAGAGATCTGAAGCCTAATGGGTCACAGGGACCGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGTACTGAGAGATCTGAAGCCTAATGGGTCACAGGGACCGGTTAA  50

seq1  AAGCCACTGTGACTTTAAGGAGTATCCCTTGGCGACACCACTCTAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGTGACTTTAAGGAGTATCCCTTGGCGACACCACTCTAAAGGG  100

seq1  TTTTTCTAGTCCAGAGTATTAAAGCAAGAATTATTTACACATCTGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGTCCAGAGTATTAAAGCAAGAATTATTTACACATCTGATTTC  150

seq1  TTCTTGCTTTTCTTTGGCAGAGGAGCTTATGCGTTTTTAAAGGGGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTTTCTTTGGCAGAGGAGCTTATGCGTTTTTAAAGGGGTCTTG  200

seq1  TTTTTTTGATTCTCGGGATAAAAAACGTGGATTCAAAGCGATTCAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGATTCTCGGGATAAAAAACGTGGATTCAAAGCGATTCAAGAAG  250

seq1  TTAAAGAGCTGGCCACCAGGCCTCACAACTGCATTTACATCCCCAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGCTGGCCACCAGGCCTCACAACTGCATTTACATCCCCAGGTCC  300

seq1  TTTAAGATGGAAAGAGACAATTGACTCAAGAAAGTTGTCCTCCAACGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGGAAAGAGACAATTGACTCAAGAAAGTTGTCCTCCAACGTGC  350

seq1  ACCCCTGCGTGGCAAGATTCACGTGCTCACATCCATCCCAGACATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCGTGGCAAGATTCACGTGCTCACATCCATCCCAGACATAAAAT  400

seq1  AAATAAAATGCAATAAAAGTACTTTCAGAGCTTAAAAAGCCTTCACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGCAATAAAAGTACTTTCAGAGCTTAAAAAGCCTTCACCAGT  450

seq1  TGTCCGTAGTATATAGACCAAGAGTGTCCAGGTTGTAGTTTCTTGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTAGTATATAGACCAAGAGTGTCCAGGTTGTAGTTTCTTGTGAGT  500

seq1  TATTTCATTTATACAGCAACCCAGGGGTCAATGAGCCTATTATCTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTTATACAGCAACCCAGGGGTCAATGAGCCTATTATCTAAACT  550

seq1  TTCTCCCCATTTAATAAGTGACATCAGAAAAAACGCAAAAGGGTTAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCATTTAATAAGTGACATCAGAAAAAACGCAAAAGGGTTAAGGA  600

seq1  AATCTTATGGATGCCACACATATTGCAAATTGACTACTTTTTATGTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGGATGCCACACATATTGCAAATTGACTACTTTTTATGTTACA  650

seq1  GGAATCATTCATGAGGAGGGTGGGGGAGATGACTACGTGACTAACAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATTCATGAGGAGGGTGGGGGAGATGACTACGTGACTAACAGCAT  700

seq1  TGGTGATCAGCAATACTGAGTCCAATATCACCTCTGGAGAACTGTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCAGCAATACTGAGTCCAATATCACCTCTGGAGAACTGTGACCT  750

seq1  CGGCAATTTATTTGACCTGTCCTTGCCCTGTTGTTTGGAGCTGCTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATTTATTTGACCTGTCCTTGCCCTGTTGTTTGGAGCTGCTAAATT  800

seq1  ACTATGTAAATACATCAAACCTTTAGCTCTAAAAAGTTGTTTTGATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAAATACATCAAACCTTTAGCTCTAAAAAGTTGTTTTGATTCTT  850

seq1  GAGTTTAAGTTTCCACCATGTTTTAAATTTTGGGATAATGAAACTATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAGTTTCCACCATGTTTTAAATTTTGGGATAATGAAACTATAGA  900

seq1  CAAATAAAA-TTCTTGAGAACCTGGCAAAGAGAAGACTC-TTTGTCTCAG  948
      ||||||||| |||||||||||||||||||||| |||||| ||||||||||
seq2  CAAATAAAATTTCTTGAGAACCTGGCAAAGAG-AGACTCTTTTGTCTCAG  949

seq1  CACAAAGTAAGTTTTGTAAGATGGAGTTGCTTCAGGGTTAAAAAAAC-TT  997
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CACAAAGTAAGTTTTGTAAGATGGAGTTGCTTCA-GGTTAAAAAAACTTT  998

seq1  CCA-CCATTGGGAAGTAAACGCTTAATGGGGGCTAAATCAGAATAGAAAG  1046
      ||| | |||||||||| ||||||| |||||||||||||||||||||||||
seq2  CCATCAATTGGGAAGT-AACGCTT-ATGGGGGCTAAATCAGAATAGAAAG  1046

seq1  CCCCTGTTCTCTCTTGAG-GTCAGAGAG-AGATCAAAGCTCTGTCAGCAA  1094
       |||||||| |||||  | ||||||||| ||||| ||||||||||||| |
seq2  -CCCTGTTC-CTCTTCTGAGTCAGAGAGAAGATCCAAGCTCTGTCAGCCA  1094

seq1  TCTCCTTTATCCCAGAGTACCACATTGCTTGAGATACAAAGTATAGTG-T  1143
      ||||| ||||  |||| || |||||||||||| | |  |||||||||| |
seq2  TCTCC-TTAT--CAGATTA-CACATTGCTTGA-AAATCAAGTATAGTGCT  1139

seq1  AG-AATGTGTG  1153
      || ||||||||
seq2  AGAAATGTGTG  1150