BAC Information

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BAC

Clone NameB6Ng01-310O23
Chromosome4 (Build37)
Map Location 132,336,606 - 132,475,666
singlet/doubletdoublet
Overlap geneBC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163
Upstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2
Downstream geneFgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310O23.bB6Ng01-310O23.g
ACCGA102779GA102780
length1,0431,160
definitionB6Ng01-310O23.b B6Ng01-310O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,474,652 - 132,475,666)(132,336,606 - 132,337,787)
sequence
gaattccaggacagccaaggatatacagagaaaccatgtctttttttttt
ttttttgagacaggatgccaccacgaccagctggataaggtcttactatg
tagactagattttttttttttaagttttatttttattgttaactctgttt
gtgagctcagttgctggtagaagcttagaggtgtcagaagccgctagaac
tggggtgaaggtggtagtgagccatggaatgtgggtgctgaaagtgaact
ctggccctctggaaatggaggaaatgtttttggtttttcgagacaggatt
tctccgtgtagccctggctgtcctggaactcactttgtagaccaggctgg
cctagaactcagaaacccgcctgcctctgcctcccaagtgctgggattac
aggcatgtgccaccactgcccggctggatgaaatgttcttaaccccatat
ctctctagtcttaggatggtctcatgctcaagagacccacctgcctctgc
ctccatagtgctgaggtcaaaggtgttcaccgtctgcgaagctaaatctt
acagagaggtagtcagttacattgtatacaagttatgtgtttcttgtata
ttaatgggtttagagtataaacattatttcctgttaacccattgtttgct
taggttttttgttttactagtgtagttttctgccactttaaaaaagaagt
ggcgagctcagcatggtggtagagatctgtaatcccagggactgttgaga
cctttctcagctaaacaaggtaactctacacaaatgatcaaggaactgga
aagtaattaacaagtgactttaaacatttaaccaggctggcagagcactc
agagagagagagagagagaccttgtctcacaaaacacacagaaacacaca
cacacacacacacacacacacacacacatcatcatcatcatcatcatcag
gctttaactgcagcactggagaagcaagcctgggtctcataagtgagctc
aagtgtagacctggatgctgggcctccgctcaagtccggatga
gaattccattccaaggtagaaaggtcaggggacctgcaaggacaggtcca
ggcagcccagagaggagcagacacaggagcacacacaggtacagtgtcta
gaatctgactcaaattggacccagtctcaaaacagctgtaagctggtggc
ctacagctaaattctgtggcttccttagcttgcagttctctcatttccca
ggatgtgatggatagtttcacacaacacgcctagaccaaccttggaaatt
gcatggacaaagtttgtatttgtcctcttgtctccagctctgagcatggt
ttaagactccccgttaagagcccagggaaccagccggacgtggtggcgca
cgactttaatctcagaactagggaggcagaggcaggtgcatttctgagtt
cgaggccagcctggtctacagagtgagttccaggacagccagggctatac
agagaaaccctatctcggaaaaaaaaaaaaaaaaaagtccagggaaccag
gacaggtttgttttttaacacagtgacttccatgaggagatgacaggctt
ggaaaccagagactggagggagacacagctgtgtgaccttggttaacagt
gatactgagtgagtaccaggtacaggtactaaatgccttgtaaatactca
gttgatccttgaatcctcaaatccatgtctacaagtcatgaaactaaagc
ctaaagtgaaatagcagctggtccatggagagctgggaacccaagtccag
actgttgcctttggagccctctcctttaaccactggtctagtctacctct
tggaccatcagtcactaactaagcctgttgcccaatctaaaatcaggcag
ctatttcgctgtaagagttcaaggtttggcggggcagtggtggcgcacac
ctttaatcccagcactcaggaagcaggatttaggctctcattcactcaag
aggcaggtaggtggatttctgagttcgagcagcttgtcttacagagtgag
ttcaggacagccagggctacacagagaaccttatctctaaaactaaaact
aaaactaaaaaaaaaacccaaacaatagttcagcttggattgttcttaag
agaatcttatgcagcaagacaggattttcactcatacgaaggtgtatcac
tttttattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132474652_132475666
seq2: B6Ng01-310O23.b_84_1089 (reverse)

seq1  TCATCCCGGGACTTGAGCGGAGGCCCAGCATCAGGGTCTTACACCTGGAG  50
      ||||||  ||||||||||||||||||||||||  |||| |||| || |||
seq2  TCATCC--GGACTTGAGCGGAGGCCCAGCATCCAGGTC-TACA-CTTGAG  46

seq1  CTCACTATGGAGA-CCAGGCTTGCTTCTCCAGTGCTGCAGTTAAAGGCCT  99
      ||||||   |||| ||||||||||||||||||||||||||||||| ||||
seq2  CTCACTTATGAGACCCAGGCTTGCTTCTCCAGTGCTGCAGTTAAA-GCCT  95

seq1  GATGATGATGATGATGATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGATGATGATGATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  145

seq1  TGTGGTTTCTGTTGTTGTTTTTGTGAGACAAGGTCTCTCTCTCTCTCTCT  199
      ||| ||||||| |||   ||||||||||||||||||||||||||||||||
seq2  TGT-GTTTCTG-TGT--GTTTTGTGAGACAAGGTCTCTCTCTCTCTCTCT  191

seq1  CTGAGTGCTCTGCCAGCCTGGTTAAATGTTTAAAGTCACTTGTTAATTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTCTGCCAGCCTGGTTAAATGTTTAAAGTCACTTGTTAATTAC  241

seq1  TTTCCAGTTCCTTGATCATTTGTGTAGAGTTACCTTTGTTTAGCTGAGAA  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCCAGTTCCTTGATCATTTGTGTAGAGTTACC-TTGTTTAGCTGAGAA  290

seq1  AGGTCTCAACAGTCCCTGGGATTACAGATCTCTACCACCATGCTGAGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAACAGTCCCTGGGATTACAGATCTCTACCACCATGCTGAGCTC  340

seq1  GCCACTTCTTTTTTAAAGTGGCAGAAAACTACACTAGTAAAACAAAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTTTTTTAAAGTGGCAGAAAACTACACTAGTAAAACAAAAAAC  390

seq1  CTAAGCAAACAATGGGTTAACAGGAAATAATGTTTATACTCTAAACCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAACAATGGGTTAACAGGAAATAATGTTTATACTCTAAACCCAT  440

seq1  TAATATACAAGAAACACATAACTTGTATACAATGTAACTGACTACCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAAGAAACACATAACTTGTATACAATGTAACTGACTACCTCTC  490

seq1  TGTAAGATTTAGCTTCGCAGACGGTGAACACCTTTGACCTCAGCACTATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATTTAGCTTCGCAGACGGTGAACACCTTTGACCTCAGCACTATG  540

seq1  GAGGCAGAGGCAGGTGGGTCTCTTGAGCATGAGACCATCCTAAGACTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGTGGGTCTCTTGAGCATGAGACCATCCTAAGACTAGA  590

seq1  GAGATATGGGGTTAAGAACATTTCATCCAGCCGGGCAGTGGTGGCACATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGGGGTTAAGAACATTTCATCCAGCCGGGCAGTGGTGGCACATG  640

seq1  CCTGTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGGTTTCTGAGTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGGTTTCTGAGTTCT  690

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACGG  740

seq1  AGAAATCCTGTCTCGAAAAACCAAAAACATTTCCTCCATTTCCAGAGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTGTCTCGAAAAACCAAAAACATTTCCTCCATTTCCAGAGGGC  790

seq1  CAGAGTTCACTTTCAGCACCCACATTCCATGGCTCACTACCACCTTCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCACTTTCAGCACCCACATTCCATGGCTCACTACCACCTTCACC  840

seq1  CCAGTTCTAGCGGCTTCTGACACCTCTAAGCTTCTACCAGCAACTGAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAGCGGCTTCTGACACCTCTAAGCTTCTACCAGCAACTGAGCT  890

seq1  CACAAACAGAGTTAACAATAAAAATAAAACTTAAAAAAAAAAAATCTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAGAGTTAACAATAAAAATAAAACTTAAAAAAAAAAAATCTAGT  940

seq1  CTACATAGTAAGACCTTATCCAGCTGGTCGTGGTGGCATCCTGTCTCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTAAGACCTTATCCAGCTGGTCGTGGTGGCATCCTGTCTCAAA  990

seq1  AAAAAAAAAAAAAGAC  1015
      ||||||||||||||||
seq2  AAAAAAAAAAAAAGAC  1006

seq1: chr4_132336606_132337787
seq2: B6Ng01-310O23.g_71_1230

seq1  GAATTCCATTCCAAGGTAGAAAGGTCAGGGGACCTGCAAGGACAGGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCAAGGTAGAAAGGTCAGGGGACCTGCAAGGACAGGTCCA  50

seq1  GGCAGCCCAGAGAGGAGCAGACACAGGAGCACACACAGGTACAGTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCAGAGAGGAGCAGACACAGGAGCACACACAGGTACAGTGTCTA  100

seq1  GAATCTGACTCAAATTGGACCCAGTCTCAAAACAGCTGTAAGCTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGACTCAAATTGGACCCAGTCTCAAAACAGCTGTAAGCTGGTGGC  150

seq1  CTACAGCTAAATTCTGTGGCTTCCTTAGCTTGCAGTTCTCTCATTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTAAATTCTGTGGCTTCCTTAGCTTGCAGTTCTCTCATTTCCCA  200

seq1  GGATGTGATGGATAGTTTCACACAACACGCCTAGACCAACCTTGGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGATGGATAGTTTCACACAACACGCCTAGACCAACCTTGGAAATT  250

seq1  GCATGGACAAAGTTTGTATTTGTCCTCTTGTCTCCAGCTCTGAGCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGACAAAGTTTGTATTTGTCCTCTTGTCTCCAGCTCTGAGCATGGT  300

seq1  TTAAGACTCCCCGTTAAGAGCCCAGGGAACCAGCCGGACGTGGTGGCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTCCCCGTTAAGAGCCCAGGGAACCAGCCGGACGTGGTGGCGCA  350

seq1  CGACTTTAATCTCAGAACTAGGGAGGCAGAGGCAGGTGCATTTCTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTAATCTCAGAACTAGGGAGGCAGAGGCAGGTGCATTTCTGAGTT  400

seq1  CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAC  450

seq1  AGAGAAACCCTATCTCGGAAAAAAAAAAAAAAAAAAGTCCAGGGAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTATCTCGGAAAAAAAAAAAAAAAAAAGTCCAGGGAACCAG  500

seq1  GACAGGTTTGTTTTTTAACACAGTGACTTCCATGAGGAGATGACAGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTTGTTTTTTAACACAGTGACTTCCATGAGGAGATGACAGGCTT  550

seq1  GGAAACCAGAGACTGGAGGGAGACACAGCTGTGTGACCTTGGTTAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAGAGACTGGAGGGAGACACAGCTGTGTGACCTTGGTTAACAGT  600

seq1  GATACTGAGTGAGTACCAGGTACAGGTACTAAATGCCTTGTAAATACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAGTGAGTACCAGGTACAGGTACTAAATGCCTTGTAAATACTCA  650

seq1  GTTGATCCTTGAATCCTCAAATCCATGTCTACAAGTCATGAAACTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCTTGAATCCTCAAATCCATGTCTACAAGTCATGAAACTAAAGC  700

seq1  CTAAAGTGAAATAGCAGCTGGTCCATGGAGAGCTGGGAACCCAAGTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGAAATAGCAGCTGGTCCATGGAGAGCTGGGAACCCAAGTCCAG  750

seq1  ACTGTTGCCTTTGGAGCCCTCTCCTTTAACCACTGGTCTAGTCTACCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCCTTTGGAGCCCTCTCCTTTAACCACTGGTCTAGTCTACCTCT  800

seq1  TGGACCATCAGTCACTAACTAAGCCTGTTGCCCAATCTAAAAATCAGGCA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGACCATCAGTCACTAACTAAGCCTGTTGCCCAATCT-AAAATCAGGCA  849

seq1  GCTATTTCGCTGTAAGAGTTCAAGGTTTGGCGGGGCAGTGGTGGCGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCGCTGTAAGAGTTCAAGGTTTGGCGGGGCAGTGGTGGCGCACA  899

seq1  CCTTTAATCCCAGCACTCAGGAGGCAGGATTTAGGCCCTCATTCACTCAG  950
      |||||||||||||||||||||| ||||||||||||| |||||||||||| 
seq2  CCTTTAATCCCAGCACTCAGGAAGCAGGATTTAGGCTCTCATTCACTCAA  949

seq1  GAGGCAGGTAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGT  1000
      ||||||||||||||||||||||||||||||  |||| ||   ||||||||
seq2  GAGGCAGGTAGGTGGATTTCTGAGTTCGAG--CAGCTTGTCTTACAGAGT  997

seq1  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTCTAAAAACA  1050
      ||||| |||||||||||||||||||||||| |||| ||||||||||   |
seq2  GAGTT-CAGGACAGCCAGGGCTACACAGAG-AACCTTATCTCTAAA---A  1042

seq1  AAAAAACAAAAAAACAAAAAAAAAAAAAACCAAAACAAATAGTTCAAGGT  1100
        ||||| ||     ||  |||||||||||| |||| |||||||||  | 
seq2  CTAAAACTAA-----AACTAAAAAAAAAACCCAAAC-AATAGTTCA--GC  1084

seq1  TTGGATGTGGTTTCTAAAGAG--TCTAGTGCACAGACAAGACAAGACATT  1148
      |||||| ||  |||| |||||  |||  ||||    ||||||| ||  ||
seq2  TTGGAT-TG--TTCTTAAGAGAATCTTATGCA---GCAAGACAGGA-TTT  1127

seq1  TCACTCATACAGAAGTGTGTATCA-TTTTTATTCT  1182
      |||||||||| |||| |||||||| ||||||||||
seq2  TCACTCATAC-GAAG-GTGTATCACTTTTTATTCT  1160