BAC Information

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BAC

Clone NameB6Ng01-310P24
Chromosome4 (Build37)
Map Location 120,037,193 - 120,234,405
singlet/doubletdoublet
Overlap geneScmh1, Slfnl1, Ctps
Upstream gene1700041C02Rik, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
Downstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310P24.bB6Ng01-310P24.g
ACCGA102827GA102828
length3411,085
definitionB6Ng01-310P24.b B6Ng01-310P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,037,193 - 120,037,533)(120,233,342 - 120,234,405)
sequence
aaccccatctggggttcatgctcaggtctagtccttcctgtaagaacaag
acaagtccccagaccctacaagcagcagaatgggtacatatatgttaggg
agtctcagaggacttgtgagcataaaaggagactgggggttcttcagggt
ggaggtggggagtctagaggtcaggacacctagtggggctcaaaagcctg
aggaagggttttcttcccactccttccatggctcagaggagcctgggctc
aggctgggaagcagggctgctatgttgccatggaaacagagggttcctct
ctccctcacagcaggaatcacggtgattggggggtgggggg
gaattctgtctgcctcagcctctcaagtgctaggattaaaggtgtgccta
gctcctggtacctttaaaactgactattttcctaaaatgctgtggcaata
tctgcaatgttcttggggttatcaagagattctaaccgcatcacctttga
gcataaagcagtgtctgaagactgacttctaaagggctactaggcttttg
tggtcacactgtaactgggcactgaattgagagacagcacatgttagaga
gtcaacgataacttttgacatgctgtgtcctttcagcttggtggcacagt
gggagacattgaaagcatgcccttcattgaggccttccgccagttccagt
tcaaggtcaagagggaaaacttttgtaatatccatgtcagtctggttcct
caggtaagcatgtggtttggctctaatagctttcaacactgaaggtgctg
gaaataggaaataaagaacttctgtgagtctattaaaatcacattcttct
ttttgttttgttttgtattgtttttcacgacagggtttctctgtatagcc
ttggctgtcctggaactcactttgtagaccaggctggcctcaagaaatcc
acctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactg
cccggcaaaatcacattcttatatttagttatttggtgtgtgtgttggtg
gatggaggacacacatgctcatacctgctgagccttcttgcagtctatga
tatgaaagattaaatggaaaacatttaaaaaatgaaaacaggacagttga
aattaaagatggtagatttaaactttgtatgcttatctttactatctgtc
aaaggtaaaatattttttgaacgaacaggaaatcttaaaaaaagatagat
gggcgttggagaacttggtggtaatagaattaaggaattcacaaagcttg
ctgaaaggagcagccttgcagcagagatgttgaagaagtcaccccttttc
cgatgggacttctccagaagctcgagatgggcactgggaggtctgatcaa
gctctttctggaagatgaatacgaatatagggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_120037193_120037533
seq2: B6Ng01-310P24.b_55_395

seq1  AACCCCATCTGGGGTTCATGCTCAGGTCTAGTCCTTCCTGTAAGAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATCTGGGGTTCATGCTCAGGTCTAGTCCTTCCTGTAAGAACAAG  50

seq1  ACAAGTCCCCAGACCCTACAAGCAGCAGAATGGGTACATATATGTTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCCCAGACCCTACAAGCAGCAGAATGGGTACATATATGTTAGGG  100

seq1  AGTCTCAGAGGACTTGTGAGCATAAAAGGAGACTGGGGGTTCTTCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGAGGACTTGTGAGCATAAAAGGAGACTGGGGGTTCTTCAGGGT  150

seq1  GGAGGTGGGGAGTCTAGAGGTCAGGACACCTAGTGGGGCTCAAAAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGGGAGTCTAGAGGTCAGGACACCTAGTGGGGCTCAAAAGCCTG  200

seq1  AGGAAGGGTTTTCTTCCCACTCCTTCCATGGCTCAGAGGAGCCTGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGTTTTCTTCCCACTCCTTCCATGGCTCAGAGGAGCCTGGGCTC  250

seq1  AGGCTGGGAAGCAGGGCTGCTATGTTGCCATGGAAACAGAGGGTTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGAAGCAGGGCTGCTATGTTGCCATGGAAACAGAGGGTTCCTCT  300

seq1  CTCCCTCACAGCAGGAATCACGGTGATTGGGGGGTGGGGGG  341
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACAGCAGGAATCACGGTGATTGGGGGGTGGGGGG  341

seq1: chr4_120233342_120234405
seq2: B6Ng01-310P24.g_68_1152 (reverse)

seq1  GAGCCCTA-ATTCGTA-TCTACTCCCAG-AAGAGCCTGA-CAG-CCTCCC  45
      |||||||| ||||||| ||  || |||| |||||| ||| ||| ||||||
seq2  GAGCCCTATATTCGTATTCATCTTCCAGAAAGAGCTTGATCAGACCTCCC  50

seq1  AGTGCCCATCCCGAGACTCTGGAG-AGTCC--ACGGGAAAGGGGTGACTT  92
      |||||||||| ||||  ||||||| |||||   ||| |||||||||||||
seq2  AGTGCCCATCTCGAGCTTCTGGAGAAGTCCCATCGGAAAAGGGGTGACTT  100

seq1  C-TCAACATCTGCTGCTGCAAGGCTGCTCC-TTCAGC-AGCTTTGTGAAT  139
      | ||||||||| |||||||||||||||||| |||||| ||||||||||||
seq2  CTTCAACATCT-CTGCTGCAAGGCTGCTCCTTTCAGCAAGCTTTGTGAAT  149

seq1  TCCTTACTTCTATTACCACC-AGTTCTCC-ACG-CCATCTATCTTTTTTA  186
      |||||| ||||||||||||| |||||||| ||| ||||||||||||||| 
seq2  TCCTTAATTCTATTACCACCAAGTTCTCCAACGCCCATCTATCTTTTTTT  199

seq1  AA---TTTCTGT--CTTCAAAAATTATTTTA-CTTTGACAGATAGTAAAG  230
      ||   || ||||   |||||||| ||||||| ||||||||||||||||||
seq2  AAGATTTCCTGTTCGTTCAAAAAATATTTTACCTTTGACAGATAGTAAAG  249

seq1  ATAAGCATAC-AAGTTT-AATCTACCATCTTTAATTTCAACTGTCCTG-T  277
      |||||||||| |||||| |||||||||||||||||||||||||||||| |
seq2  ATAAGCATACAAAGTTTAAATCTACCATCTTTAATTTCAACTGTCCTGTT  299

seq1  TTCATTTTTTAAATGTTTTCCATTTAATCTTTCATATCATAGACTGGCAA  327
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCATTTTTTAAATGTTTTCCATTTAATCTTTCATATCATAGACT-GCAA  348

seq1  GAAGGCTCAGCAGGTATGAGCATGTGTGTCCTCCATCCACCAACACACAC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCAGCAGGTATGAGCATGTGTGTCCTCCATCCACCAACACACAC  398

seq1  ACCAAATAACTAAATATAAGAATGTGATTTTGCCGGGCAGTGGTGGCGCA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAACTAAATATAAGAATGTGATTTTGCCGGGCAGTGGTGGCGCA  448

seq1  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTTGAGG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTTGAGG  498

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGA  548

seq1  AACCCTGTCGTGAAAAACAATACAAAACAAAACAAAAAGAAGAATGTGAT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCGTGAAAAACAATACAAAACAAAACAAAAAGAAGAATGTGAT  598

seq1  TTTAATAGACTCACAGAAGTTCTTTATTTCCTATTTCCAGCACCTTCAGT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGACTCACAGAAGTTCTTTATTTCCTATTTCCAGCACCTTCAGT  648

seq1  GTTGAAAGCTATTAGAGCCAAACCACATGCTTACCTGAGGAACCAGACTG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGCTATTAGAGCCAAACCACATGCTTACCTGAGGAACCAGACTG  698

seq1  ACATGGATATTACAAAAGTTTTCCCTCTTGACCTTGAACTGGAACTGGCG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATATTACAAAAGTTTTCCCTCTTGACCTTGAACTGGAACTGGCG  748

seq1  GAAGGCCTCAATGAAGGGCATGCTTTCAATGTCTCCCACTGTGCCACCAA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTCAATGAAGGGCATGCTTTCAATGTCTCCCACTGTGCCACCAA  798

seq1  GCTGAAAGGACACAGCATGTCAAAAGTTATCGTTGACTCTCTAACATGTG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGACACAGCATGTCAAAAGTTATCGTTGACTCTCTAACATGTG  848

seq1  CTGTCTCTCAATTCAGTGCCCAGTTACAGTGTGACCACAAAAGCCTAGTA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCAATTCAGTGCCCAGTTACAGTGTGACCACAAAAGCCTAGTA  898

seq1  GCCCTTTAGAAGTCAGTCTTCAGACACTGCTTTATGCTCAAAGGTGATGC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAGAAGTCAGTCTTCAGACACTGCTTTATGCTCAAAGGTGATGC  948

seq1  GGTTAGAATCTCTTGATAACCCCAAGAACATTGCAGATATTGCCACAGCA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAATCTCTTGATAACCCCAAGAACATTGCAGATATTGCCACAGCA  998

seq1  TTTTAGGAAAATAGTCAGTTTTAAAGGTACCAGGAGCTAGGCACACCTTT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAAATAGTCAGTTTTAAAGGTACCAGGAGCTAGGCACACCTTT  1048

seq1  AATCCTAGCACTTGAGAGGCTGAGGCAGACAGAATTC  1064
      |||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGCACTTGAGAGGCTGAGGCAGACAGAATTC  1085