BAC Information

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BAC

Clone NameB6Ng01-311J10
Chromosome4 (Build37)
Map Location 133,508,386 - 133,665,913
singlet/doubletdoublet
Overlap geneHmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5
Upstream geneFgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151
Downstream geneSh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311J10.bB6Ng01-311J10.g
ACCGA103270GA103271
length1,0461,026
definitionB6Ng01-311J10.b B6Ng01-311J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,664,867 - 133,665,913)(133,508,386 - 133,509,400)
sequence
gaattcagccctttttggagcgttcagatgaggaagcagatagccagagg
ctgagctcgcccttcagggccttcactgtctctgagcctcaatcacagac
ctgttgacgtcacgcttgctggaaattggagggtttccagccacagcctg
gcttggggcttggccagattcctaacctgtggctttaggtcaactcctgt
cctggatgggtgtggggtacaagcactggggcagtgggagcagcatctaa
acacagcaggtgagatgagtaggagccactgttctcagagcctcccccag
agcaagggagagccacgcccctttagccctccactctcaccttgcctact
cacaggggcaccgatgcctccatagcaggaaggcagagagatcttctctt
ctgagtcttggccatcattccacatgtccacctcatcttctgcagacagg
aatgcccgggtcactgctctgggaccacaacccagagaacactctggcct
gggtcctggccaagatgaaacagcttatacactgccccacaaggtgcaca
atcaggccagtgatgaggccagggctccaggagagaagactacaaggcag
aggctgaggtccacatctctggtcttcccatagctctgaggtacccataa
ccatctttttgggggcagagttttatgatggtgtggatctctctgctgag
ggatcagagcaagtgggtggcccaggcccctgagcaacaggtagggagca
tgaatacaggaggcaggccagatgcccagtctcacaagacctcagcgtgc
tccttccctacatgcctagctgtaagaagatgtaggctggtgagagggga
ggggacatgggaacagggcacacactcaccatttccgtagactcttatcc
ctcgtctcctgggaacccaggcaggaagaaggaacaaatataaagttaac
ccccttggaatgccaccaagggaaagtcccaggccccatgcaaagctaaa
gagaatagagctagcctcatctcctgaagactcccacccccatcta
gaattctccttcccctggctggcagaagtcctgccttattctctcttctg
cccagccattgagtgatcggcatttattgacaaggcagagaataaataaa
tggtaagagttgtttacacaaacatgaaacaggagatttttttttagaat
tatttattatatataagtacactgtagctgtcttcagacacaccagaaga
gggcgtcagatcccattacagatggttgtgagccaccatgtggttgctgg
gaattaaactcaggacctctggaagagcagtcagtgctcttaaccactga
gccatctctccagcccccagagacaggagattcttgacataagcattaca
atgccctgtctggattgaaacaagatgtgaggggggcagagaaatcagca
ttttaataacacaaggataacattatgcctcaatctccaaccatgccttt
aagactgagtagattcttttggagattagatttagaattatgtaaatatt
ttttacaaattcatttatttcttctgttgattttttgagacagagtttct
ctgtgtagctctggctgtcctagatctcactgtgtagctcaggctggcct
gaaactcagagatccacctgccttggcctcctgagtgctggagttaaaga
catgagccaccttgcctggtttaattttggtgttttgagataaagtatca
ccaggttgcccaggctagccctaaacatattatgttggctagcctgcaat
ttacaatcctattgtttcagactcccatatatttaaagttatatgtctgc
actaacaggcctagtgactttcttttgtttttgggagatgggggctctca
ctatgtagcccaggatgaccccagctctctaacactagggtaacagggta
gctgcactatgactggcacactaattgccaacagaacccttcagggcccc
ttttgtcttgcgtagaacgggatctctgggtcacagggtgagccaaagag
ttgagggaaatgacagacagatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133664867_133665913
seq2: B6Ng01-311J10.b_45_1090 (reverse)

seq1  TAGATGGGGGTGGGAGTCTTCAGGAGATGGAGGCTTAGCTTCTA-TCTCT  49
      |||||||||||||||||||||||||||| ||||| |||| |||| |||||
seq2  TAGATGGGGGTGGGAGTCTTCAGGAGAT-GAGGC-TAGC-TCTATTCTCT  47

seq1  TTAGCTTTGCATGGGGCCTGGGACTTTCCCTTGGTGGCATTCCAAGGGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTGCATGGGGCCTGGGACTTTCCCTTGGTGGCATTCCAAGGGGG  97

seq1  TTAAC-TTATATTTGTTCCTTCTTCCTGCCTGGGTTCCCAGGAGACGAGG  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTATATTTGTTCCTTCTTCCTGCCTGGGTTCCCAGGAGACGAGG  147

seq1  GATAAGAGTCTACGGAAATGGTGAGTGTGTGCCCTGTTCCCATGTCCCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGTCTACGGAAATGGTGAGTGTGTGCCCTGTTCCCATGTCCCCT  197

seq1  CCCCTCTCACCAGCCTACATCTTCTTACAGCTAGGCATGTAGGGAAGGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCACCAGCCTACATCTTCTTACAGCTAGGCATGTAGGGAAGGAG  247

seq1  CACGCTGAGGTCTTGTGAGACTGGGCATCTGGCCTGCCTCCTGTATTCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGAGGTCTTGTGAGACTGGGCATCTGGCCTGCCTCCTGTATTCAT  297

seq1  GCTCCCTACCTGTTGCTCAGGGGCCTGGGCCACCCACTTGCTCTGATCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTACCTGTTGCTCAGGGGCCTGGGCCACCCACTTGCTCTGATCCC  347

seq1  TCAGCAGAGAGATCCACACCATCATAAAACTCTGCCCCCAAAAAGATGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGAGATCCACACCATCATAAAACTCTGCCCCCAAAAAGATGGT  397

seq1  TATGGGTACCTCAGAGCTATGGGAAGACCAGAGATGTGGACCTCAGCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTACCTCAGAGCTATGGGAAGACCAGAGATGTGGACCTCAGCCTC  447

seq1  TGCCTTGTAGTCTTCTCTCCTGGAGCCCTGGCCTCATCACTGGCCTGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTAGTCTTCTCTCCTGGAGCCCTGGCCTCATCACTGGCCTGATT  497

seq1  GTGCACCTTGTGGGGCAGTGTATAAGCTGTTTCATCTTGGCCAGGACCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCTTGTGGGGCAGTGTATAAGCTGTTTCATCTTGGCCAGGACCCA  547

seq1  GGCCAGAGTGTTCTCTGGGTTGTGGTCCCAGAGCAGTGACCCGGGCATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTGTTCTCTGGGTTGTGGTCCCAGAGCAGTGACCCGGGCATTC  597

seq1  CTGTCTGCAGAAGATGAGGTGGACATGTGGAATGATGGCCAAGACTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGAAGATGAGGTGGACATGTGGAATGATGGCCAAGACTCAGA  647

seq1  AGAGAAGATCTCTCTGCCTTCCTGCTATGGAGGCATCGGTGCCCCTGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGATCTCTCTGCCTTCCTGCTATGGAGGCATCGGTGCCCCTGTGA  697

seq1  GTAGGCAAGGTGAGAGTGGAGGGCTAAAGGGGCGTGGCTCTCCCTTGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAAGGTGAGAGTGGAGGGCTAAAGGGGCGTGGCTCTCCCTTGCTC  747

seq1  TGGGGGAGGCTCTGAGAACAGTGGCTCCTACTCATCTCACCTGCTGTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGCTCTGAGAACAGTGGCTCCTACTCATCTCACCTGCTGTGTT  797

seq1  TAGATGCTGCTCCCACTGCCCCAGTGCTTGTACCCCACACCCATCCAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTGCTCCCACTGCCCCAGTGCTTGTACCCCACACCCATCCAGGA  847

seq1  CAGGAGTTGACCTAAAGCCACAGGTTAGGAATCTGGCCAAGCCCCAAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTGACCTAAAGCCACAGGTTAGGAATCTGGCCAAGCCCCAAGCC  897

seq1  AGGCTGTGGCTGGAAACCCTCCAATTTCCAGCAAGCGTGACGTCAACAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGCTGGAAACCCTCCAATTTCCAGCAAGCGTGACGTCAACAGG  947

seq1  TCTGTGATTGAGGCTCAGAGACAGTGAAGGCCCTGAAGGGCGAGCTCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTGAGGCTCAGAGACAGTGAAGGCCCTGAAGGGCGAGCTCAGC  997

seq1  CTCTGGCTATCTGCTTCCTCATCTGAACGCTCCAAAAAGGGCTGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTATCTGCTTCCTCATCTGAACGCTCCAAAAAGGGCTGAATTC  1046

seq1: chr4_133508386_133509400
seq2: B6Ng01-311J10.g_67_1092

seq1  GAATTCTCCTTCCCCTGGCTGGCAGAAGTCCTGCCTTATTCTCTCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCCCTGGCTGGCAGAAGTCCTGCCTTATTCTCTCTTCTG  50

seq1  CCCAGCCATTGAGTGATCGGCATTTATTGACAAGGCAGAGAATAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCATTGAGTGATCGGCATTTATTGACAAGGCAGAGAATAAATAAA  100

seq1  TGGTAAGAGTTGTTTACACAAACATGAAACAGGAGATTTTTTTTTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAGTTGTTTACACAAACATGAAACAGGAGATTTTTTTTTAGAAT  150

seq1  TATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGA  200

seq1  GGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG  250

seq1  GAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGA  300

seq1  GCCATCTCTCCAGCCCCCAGAGACAGGAGATTCTTGACATAAGCATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCCAGCCCCCAGAGACAGGAGATTCTTGACATAAGCATTACA  350

seq1  ATGCCCTGTCTGGATTGAAACAAGATGTGAGGGGGGCAGAGAAATCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGTCTGGATTGAAACAAGATGTGAGGGGGGCAGAGAAATCAGCA  400

seq1  TTTTAATAACACAAGGATAACATTATGCCTCAATCTCCAACCATGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAACACAAGGATAACATTATGCCTCAATCTCCAACCATGCCTTT  450

seq1  AAGACTGAGTAGATTCTTTTGGAGATTAGATTTAGAATTATGTAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAGTAGATTCTTTTGGAGATTAGATTTAGAATTATGTAAATATT  500

seq1  TTTTACAAATTCATTTATTTCTTCTGTTGATTTTTTGAGACAGAGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAATTCATTTATTTCTTCTGTTGATTTTTTGAGACAGAGTTTCT  550

seq1  CTGTGTAGCTCTGGCTGTCCTAGATCTCACTGTGTAGCTCAGGCTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCTCTGGCTGTCCTAGATCTCACTGTGTAGCTCAGGCTGGCCT  600

seq1  GAAACTCAGAGATCCACCTGCCTTGGCCTCCTGAGTGCTGGAGTTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGAGATCCACCTGCCTTGGCCTCCTGAGTGCTGGAGTTAAAGA  650

seq1  CATGAGCCACCTTGCCTGGTTTAATTTTGGTGTTTTGAGATAAAGTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCCACCTTGCCTGGTTTAATTTTGGTGTTTTGAGATAAAGTATCA  700

seq1  CCAGGTTGCCCAGGCTAGCCCTAAACATATTATGTTGGCTAGCCTGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGCCCAGGCTAGCCCTAAACATATTATGTTGGCTAGCCTGCAAT  750

seq1  TTACAATCCTATTGTTTCAGACTCCCATATATTTAAAGTTATATGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCCTATTGTTTCAGACTCCCATATATTTAAAGTTATATGTCTGC  800

seq1  ACTAACAGGCCTAGTGAC-TTCTTT--GTTTTGGGAGATGGGGGCTCTCA  847
      |||||||||||||||||| ||||||   ||||||||||||||||||||||
seq2  ACTAACAGGCCTAGTGACTTTCTTTTGTTTTTGGGAGATGGGGGCTCTCA  850

seq1  CTATGTAGCCCAGGATGACCCCAGCTCTCTAACACTAGGGTTACA-GGTA  896
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  CTATGTAGCCCAGGATGACCCCAGCTCTCTAACACTAGGGTAACAGGGTA  900

seq1  GCTGCCACTATGACTGGCACACTAAATTGCC-ACAGA--CCCTCAGGGCC  943
      |||| |||||||||||||||||| ||||||| |||||  || ||||||||
seq2  GCTG-CACTATGACTGGCACACT-AATTGCCAACAGAACCCTTCAGGGCC  948

seq1  CC-TTTGTC-TGCGTAGAACGGG-TCTCT-GGTCACA-GGTG-GGCAAAG  987
      || |||||| ||||||||||||| ||||| ||||||| |||| | |||||
seq2  CCTTTTGTCTTGCGTAGAACGGGATCTCTGGGTCACAGGGTGAGCCAAAG  998

seq1  AGTTGGAGGGAATGACAGACAGATGCAC  1015
      |||||  || |||||||||||||||| |
seq2  AGTTGAGGGAAATGACAGACAGATGCCC  1026