BAC Information

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BAC

Clone NameB6Ng01-313N12
Chromosome4 (Build37)
Map Location 111,673,723 - 111,674,910
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
Downstream geneLOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313N12.bB6Ng01-313N12.g
ACCGA104942GA104943
length1,1781,173
definitionB6Ng01-313N12.b B6Ng01-313N12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtgtgcaaaaaatttatttaatattttgcattaatattcataa
gggaaatgggtctgaagttctctgtcttttttaggtccttctgttgttca
ggtatcagtgtaactgtggcttagaaataattggatagtattccttctgt
atctattttgtgaaatagtttgagaagtattggtattaggtattctttga
aggtctggtctacagattcaacgcattccccatcaaaatttcaactcaac
tcttcatagtgttagaaagcacaagtctcaaatccatttggaataacaaa
aaacccaggatagatattctcaacaataaaataacttctgggggaatcac
tatccttgacctcaatctgtactacagaaaaatagtgataaaaaaccaca
tggtattgatacagcaacatgcaggtagatcactggaatgaaattgaaga
ctcagaaataaacccacacatctatggatacttgatctttgacaaagaag
ctaaaactatccagcagaaaaaaaaagacagcatttttaacaaatgttgc
tggttcaattggcagtcagcatatagaagaatgcaaattcatccattatt
ctctacttgtacaaagctcaagtccaagtggatcaaggacctctacataa
aaccagatatgctgaatcaaatagtagagaaagtggggaaatgccttgaa
cacattggcacatggaaaaatttcctgagtagaacaccaatggctcaggc
tctaagaaagacaatagacaaatgtgatctcataaaactgaaaagcttct
acaagggaaaggacactgtcattgaaaaagtaaaacctaaaaacaaaatt
ctaggcctttaagcccaggcttgagaatgtgacctttgtgactcaatgct
ccaaggcatgctaatcataaaacaatagcaacattcctccacccaccctc
ttcctgggttcaggaagcgttcattcaagaaagtcacctgaccatcctga
ctgttgctggaacctgtatgcaagtgctatgttagagctcctagaaactg
tctgactttcactctcatgactctactgtattttggtatttcaacaacat
ctcccactcttgatgtggtctctgaataccctacagctacctcggggtga
cagcatcctctctattcccctcgtccag
gaattcaggcttatatactttttatgctgtcttttcatacataattctta
gggtaattactctgcatccgaggtttttaattcttctctcttaacatata
gggaaatttaatactgactatctgttcctcttctaatgaaacacagtgtt
ttttgtatagatcacttcacactcctctaatgtattccatttactgataa
ttattattttcatccttcttgaacattttttgcacactttcccccattta
cctcttttttattgctgtaaatagacatcattaccaggtgacttatagaa
gaatgcgtttattgggcttgcttctattttcaaagggtaaacctatgacc
attttgtgggaagcaatttacagcagacaggcattgtgctggagaagtag
catagagttaatatcttatccacaagttgtagaaaagaagggaaatagac
aagcagatagagagacagatagggactattatattaggtatcatgtgtaa
tttgaaggtattttatgtctttagaagttgttcattttcctatgtaaatg
ttaaaatattgttccaagaaacttaaatattagtttatctttgtatctat
gaggatcatggaactaacctttcatggataccaatggatgattacatatt
tatgatttaaccactaaatatcaatggctagcaatatatttaaaagaaaa
aagataaccaaatattacaatttactggatataaatatataatatatccc
cccccttttggtttcctttattaaagccttggagctggcgaaaaagcttg
tcaggtaaaagtgattgctaataaatctgtagacctgagtttaatccctg
gaatgcacatggtaggaaaagactaattctctcaagttgtcctcttacct
ctatatgtgtactgtagtgacaacacacacattcacacactaataaataa
taataaatggataatatcaaattaagtctgattaacattctcaacctgat
atttgtgactcactggggcttggaatgagccttacagggatcacttagaa
catatggcatgcagaatttacataatattagccaaatacagttatgaatt
ggcattgaaataactttcatggctgagggtcgccgaaccatgaccatgtt
atacagaggtggaaccattagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111673723_111674910
seq2: B6Ng01-313N12.g_67_1239

seq1  GAATTCAGGCTTATATACTTTTTATGCTGTCTTTTCATACATAATTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTATATACTTTTTATGCTGTCTTTTCATACATAATTCTTA  50

seq1  GGGTAATTACTCTGCATCCGAGGTTTTTAATTCTTCTCTCTTAACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTACTCTGCATCCGAGGTTTTTAATTCTTCTCTCTTAACATATA  100

seq1  GGGAAATTTAATACTGACTATCTGTTCCTCTTCTAATGAAACACAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTTAATACTGACTATCTGTTCCTCTTCTAATGAAACACAGTGTT  150

seq1  TTTTGTATAGATCACTTCACACTCCTCTAATGTATTCCATTTACTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATAGATCACTTCACACTCCTCTAATGTATTCCATTTACTGATAA  200

seq1  TTATTATTTTCATCCTTCTTGAACATTTTTTGCACACTTTCCCCCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTCATCCTTCTTGAACATTTTTTGCACACTTTCCCCCATTTA  250

seq1  CCTCTTTTTTATTGCTGTAAATAGACATCATTACCAGGTGACTTATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTTATTGCTGTAAATAGACATCATTACCAGGTGACTTATAGAA  300

seq1  GAATGCGTTTATTGGGCTTGCTTCTATTTTCAAAGGGTAAACCTATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGTTTATTGGGCTTGCTTCTATTTTCAAAGGGTAAACCTATGACC  350

seq1  ATTTTGTGGGAAGCAATTTACAGCAGACAGGCATTGTGCTGGAGAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGGGAAGCAATTTACAGCAGACAGGCATTGTGCTGGAGAAGTAG  400

seq1  CATAGAGTTAATATCTTATCCACAAGTTGTAGAAAAGAAGGGAAATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGTTAATATCTTATCCACAAGTTGTAGAAAAGAAGGGAAATAGAC  450

seq1  AAGCAGATAGAGAGACAGATAGGGACTATTATATTAGGTATCATGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATAGAGAGACAGATAGGGACTATTATATTAGGTATCATGTGTAA  500

seq1  TTTGAAGGTATTTTATGTCTTTAGAAGTTGTTCATTTTCCTATGTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGTATTTTATGTCTTTAGAAGTTGTTCATTTTCCTATGTAAATG  550

seq1  TTAAAATATTGTTCCAAGAAACTTAAATATTAGTTTATCTTTGTATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTGTTCCAAGAAACTTAAATATTAGTTTATCTTTGTATCTAT  600

seq1  GAGGATCATGGAACTAACCTTTCATGGATACCAATGGATGATTACATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCATGGAACTAACCTTTCATGGATACCAATGGATGATTACATATT  650

seq1  TATGATTTAACCACTAAATATCAATGGCTAGCAATATATTTAAAAG-AAA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGATTTAACCACTAAATATCAATGGCTAGCAATATATTTAAAAGAAAA  700

seq1  AAGATAACCAAATATTACAATTTACTGGATATAAATATATAATATATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACCAAATATTACAATTTACTGGATATAAATATATAATATATCCC  750

seq1  CCCCCTTTTGGTTTCCTTTATTAAAGCCTTGGAGCTGGCGAAAAAGCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTGGTTTCCTTTATTAAAGCCTTGGAGCTGGCGAAAAAGCTTG  800

seq1  TCAGGTAAAAGTGATTGCTAATAAATCTGTAGACCTGAGTTTAATCCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAAAGTGATTGCTAATAAATCTGTAGACCTGAGTTTAATCCCTG  850

seq1  GAATGCACATGGTAGGAAAAGACTAATTCTCTCAAGTTGTCCTCTTACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACATGGTAGGAAAAGACTAATTCTCTCAAGTTGTCCTCTTACCT  900

seq1  CTATATGTGTACTGTAGTGACAAACACACACATTCACACACTAAATAAAT  949
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  CTATATGTGTACTGTAGTGAC-AACACACACATTCACACACT-AATAAAT  948

seq1  AAATAAATAAATGGATAAATAATCAAAATTAAAGTCTGATTAAACATCTC  999
      ||   |||||||||||||   ||||||  | ||||||||||||   ||||
seq2  AA--TAATAAATGGATAA--TATCAAA--TTAAGTCTGATTAACATTCTC  992

seq1  AACCTGATATTTGTGACTCCACTGGGGCTT-GAATGAGCCCTTTACAGGG  1048
      |||||||||||||||||| ||||||||||| |||||||||  ||||||||
seq2  AACCTGATATTTGTGACT-CACTGGGGCTTGGAATGAGCC--TTACAGGG  1039

seq1  ATCACCTAAGACAATAT-GCATGCCAGATATTTACATAATATTAGCCAAA  1097
      |||| || |||  |||| ||||| |||| |||||||||||||||||||||
seq2  ATCA-CTTAGAACATATGGCATG-CAGA-ATTTACATAATATTAGCCAAA  1086

seq1  TTACAGTTATGAAATAGCAATGAAAATAAC-TTCATGGCTGAGGGGGTCG  1146
       |||||||||||| | ||| || ||||||| |||||||||||  ||||||
seq2  -TACAGTTATGAATTGGCATTG-AAATAACTTTCATGGCTGA--GGGTCG  1132

seq1  CCAGAACATGACAAAATGTATTAAGAGGTGGGAGCATTAGGA  1188
      ||  | |||||| |  | |||  |||||||| | ||||||||
seq2  CCGAACCATGACCATGT-TATACAGAGGTGGAACCATTAGGA  1173