BAC Information

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BAC

Clone NameB6Ng01-315C11
Chromosome4 (Build37)
Map Location 113,990,940 - 113,992,109
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040607, LOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315C11.bB6Ng01-315C11.g
ACCGA105878GA105879
length1,1521,180
definitionB6Ng01-315C11.b B6Ng01-315C11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcatgcatgaggcctctgcagtgagaatcagaccaggccaggc
atattctgctaactgatgatgattaacagtagtggcagtttcaaccatca
gcagaagggtagagaaagggaagagatgtgttttagttggccacacatac
tcacaagttctcctgtcatgtttttgagtctcctgggcacagggggcaaa
gaaaaattgagttagtgctattatacagacacttgtaattacaaatctgg
accttcaatggatttagaattttaggctaccagggttttttagacaagaa
cttagagtgttataggttagcagagtgataaattttgaaaattgcaagct
ataataaataaagggacctctgactatatacctagctgagttttcccata
gtggactagtttaaggttttgggaatgtctaggttccagaaagcttgctg
gaggccactgcaacttttatagagcattgcaatatctgaagttctagctg
gatgtggcaagaggcaggaaagaataagccacagcacatggctaccattg
ggcataccaaaagcatctcaaccaaatacaactcagtgaaattaccataa
tattaagtccaacttggtgttcctatttgtcataaccaattttttgtctc
taacagagtatctggataacttataatgaacataaactttatggttctgg
tagctgaaaagtttaagagcttagcaatgatatctgataagggctttata
ttgcatcatttcatgggggagagcagaagggtgagagaggaagagagaag
gagagagtaggaaatcaaaggtagtcaggttcactcacataacaaattca
ctgtcagagtaagtagcctactcctgtaataatgatgtcaatccatctag
gaaggcaaaacccttatgatctggctacctcttatggctttatgtccaaa
ctattggggataagtttcagcacataaacttgagaagacacattgaagct
gtacgtaatgttatgtgagatcatagatctgtaaagggaaagaatttctc
aggttggaagcaaccattgcatgaacgaatcgaaactggatctatcatat
cgctcagctccatccagttatccatcaagtcaatctggactgagactctc
ct
gaattcaataactcacttaaagaaatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacaccaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacacccagacttttcaccaga
gactatgaaagccagaagagcctggacagatgttatacagacactaagag
aacacaaatgccagcccaggctactatacccagccaaactatcaattacc
atagatggagaaaccaaagtattccacgacaaaactaaattcacccatca
tctctccacgaatccagcccttcaaaggatataacagaaaaaaacccaat
acaaggatggaaccacgccttagaaaaaacaagaagatatccctcaacaa
cctaaaagaagacaggccacaagaacagattgcactttaacacaaaaata
acaggacgaccaatacttttctaatttctcttatatcatgactcattccc
caattaaaagactagacttaaccgaacttgccttaacctaacaggaaccc
aacatttctggccgtgctcttaacagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113990940_113992109
seq2: B6Ng01-315C11.b_47_1198 (reverse)

seq1  AGGAGAGTCCTCAGTCCAAGAATGACATTGGGGATGGGAAATAACTGGAT  50
      |||||||| |||||||| ||| |||| |    |||||   ||||||||||
seq2  AGGAGAGT-CTCAGTCC-AGATTGACTT----GATGG---ATAACTGGAT  41

seq1  GGAAGCTGAGCGATATGGATAGATCCAGGTTTGA-TCTGTCATGCATTGG  99
      || ||||||||||||| ||||||||||| || || ||  ||||||| |||
seq2  GG-AGCTGAGCGATAT-GATAGATCCAGTTTCGATTCGTTCATGCAATGG  89

seq1  TTGCTT-CAAACTGAGAAAATCTTTTCCCTTTTCCAGATCTATGATTCCT  148
      |||||| ||| |||||||| |||||  || ||| ||||||||||||  ||
seq2  TTGCTTCCAACCTGAGAAATTCTTT--CCCTTTACAGATCTATGAT--CT  135

seq1  CAACATAACATTACGTTACAGCTTCAATGTGTC-TCTCAAAGTTTATGTG  197
      | ||||||||||||| ||||||||||||||||| |||| |||||||||||
seq2  C-ACATAACATTACG-TACAGCTTCAATGTGTCTTCTC-AAGTTTATGTG  182

seq1  CTGAAAACTTAATCCCCAATAGTTTGGACATAAAGCCCAATAAGAGGTAG  247
      ||| |||||| ||||||||||||||||||||||||||  |||||||||||
seq2  CTG-AAACTT-ATCCCCAATAGTTTGGACATAAAGCC--ATAAGAGGTAG  228

seq1  CCAGATCATAAGGGTTTTGCCTTCCTAGATGGATTGACATCATTATTACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCATAAGGGTTTTGCCTTCCTAGATGGATTGACATCATTATTACA  278

seq1  GGAGTAGGCTACTTACTCTGACAGTGAATTTGTTATGTGAGTGAACCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGCTACTTACTCTGACAGTGAATTTGTTATGTGAGTGAACCTGA  328

seq1  CTACC-TTGATTTCCTACTCTCTCCTTCTCTCTTCCTCTCTCACCCTTCT  396
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTGATTTCCTACTCTCTCCTTCTCTCTTCCTCTCTCACCCTTCT  378

seq1  GCTCTCCCCCATGAAATGATGCAATATAAAGCCCTTATCAGATATCATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCCCATGAAATGATGCAATATAAAGCCCTTATCAGATATCATTG  428

seq1  CTAAGCTCTTAAACTTTTCAGCTACCAGAACCATAAAGTTTATGTTCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTTAAACTTTTCAGCTACCAGAACCATAAAGTTTATGTTCATT  478

seq1  ATAAGTTATCCAGATACTCTGTTAGAGACAAAAAATTGGTTATGACAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTATCCAGATACTCTGTTAGAGACAAAAAATTGGTTATGACAAAT  528

seq1  AGGAACACCAAGTTGGACTTAATATTATGGTAATTTCACTGAGTTGTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCAAGTTGGACTTAATATTATGGTAATTTCACTGAGTTGTATT  578

seq1  TGGTTGAGATGCTTTTGGTATGCCCAATGGTAGCCATGTGCTGTGGCTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGATGCTTTTGGTATGCCCAATGGTAGCCATGTGCTGTGGCTTA  628

seq1  TTCTTTCCTGCCTCTTGCCACATCCAGCTAGAACTTCAGATATTGCAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTGCCTCTTGCCACATCCAGCTAGAACTTCAGATATTGCAATG  678

seq1  CTCTATAAAAGTTGCAGTGGCCTCCAGCAAGCTTTCTGGAACCTAGACAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAAAGTTGCAGTGGCCTCCAGCAAGCTTTCTGGAACCTAGACAT  728

seq1  TCCCAAAACCTTAAACTAGTCCACTATGGGAAAACTCAGCTAGGTATATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACCTTAAACTAGTCCACTATGGGAAAACTCAGCTAGGTATATA  778

seq1  GTCAGAGGTCCCTTTATTTATTATAGCTTGCAATTTTCAAAATTTATCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGTCCCTTTATTTATTATAGCTTGCAATTTTCAAAATTTATCAC  828

seq1  TCTGCTAACCTATAACACTCTAAGTTCTTGTCTAAAAAACCCTGGTAGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAACCTATAACACTCTAAGTTCTTGTCTAAAAAACCCTGGTAGCC  878

seq1  TAAAATTCTAAATCCATTGAAGGTCCAGATTTGTAATTACAAGTGTCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTAAATCCATTGAAGGTCCAGATTTGTAATTACAAGTGTCTGT  928

seq1  ATAATAGCACTAACTCAATTTTTCTTTGCCCCCTGTGCCCAGGAGACTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCACTAACTCAATTTTTCTTTGCCCCCTGTGCCCAGGAGACTCA  978

seq1  AAAACATGACAGGAGAACTTGTGAGTATGTGTGGCCAACTAAAACACATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGACAGGAGAACTTGTGAGTATGTGTGGCCAACTAAAACACATC  1028

seq1  TCTTCCCTTTCTCTACCCTTCTGCTGATGGTTGAAACTGCCACTACTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTTCTCTACCCTTCTGCTGATGGTTGAAACTGCCACTACTGTT  1078

seq1  AATCATCATCAGTTAGCAGAATATGCCTGGCCTGGTCTGATTCTCACTGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATCAGTTAGCAGAATATGCCTGGCCTGGTCTGATTCTCACTGC  1128

seq1  AGAGGCCTCATGCATGCTGAATTC  1170
      ||||||||||||||||||||||||
seq2  AGAGGCCTCATGCATGCTGAATTC  1152