BAC Information

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BAC

Clone NameB6Ng01-316N04
Chromosome4 (Build37)
Map Location 132,693,553 - 132,847,515
singlet/doubletdoublet
Overlap geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990
Upstream geneOprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
Downstream geneLOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316N04.bB6Ng01-316N04.g
ACCGA107122GA107123
length973462
definitionB6Ng01-316N04.b B6Ng01-316N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,846,542 - 132,847,515)(132,693,553 - 132,693,994)
sequence
gaattcactaggtagtcaatagttatctttaacttatgatcctcctgtct
ctgtcccctgagtgctgggatcatgggcatacaccaccacacctagttaa
tgtgatgcagtttattgcacagtagggatggaccccagagcactttccac
tgagtcacacccttgccctatcttttgatagccagttccagttggcatct
gtgtgcttgctgggtgcttcgaagcctctcagacttttattcaaagcaga
taccacctctcatagttccaactccacatcaattcatttttactaaagtg
actgctaaaaacccaaatttgtttttgagacagggccactgtattatgta
gctctggctgtcctggtagaccaggaatcttgaacttagagatacagctg
cctccccagtgctgggttaaaggtattgttactaaagccagctaaaaccc
agcttcttgaaagggtatcgtcaaaagcagtgtgatgtagtctcataatt
agactgcaggcttcctcaagctgactgttctcgtaatggtcagtagactt
aaaacattcctcttcgctgtcagcaccctgccagggcactgtaagatcct
tgatacagtttaggggttgctagtgccacgagaacagttctactgtgaaa
ctaagaatctttgtggctgagttcaaggccagcctggtctacagagtgag
ttccaaggacagccagggctacacagagaaaccctgtctcaaaaaaataa
acaacaacaacaacaaaatctttgtagctgtgggaagagccaagctggga
tagctggctgtgcctcatcagtctagacaaagaccctgtgttcccaaata
aagtctccacaagcttcaaggcgtttccagactgcaagagaggtgcagtg
tcccagggcgaggaagtgcaatgcagggttgtgtttggagatctgaagtg
atagattggggcttggggggggg
gaattcaaaagggaacaaagcacaagtagatacattgaaggtttggaggg
aggaaaggaagggagacatgatgtaagtatattattattttaaaaaattg
ttttactcccaatcccaaatcagacaagttagaaaattcctttcccttac
tgtgagctgctgctgctgctttttttcttcctccttttcctcctcctcct
cttttttccaagataggtttttctgtagccccaggtatcctggaactcag
agagattctattgcaagtgtctcccaagtgctgtgatcaaaggcatgtgc
catcacacctggtttactatgtgcttcttaagaataggacgtaatgttat
cctcccttcctccttccctccttccctccctctctctctctctctctctc
tctctctctctctctctctctctctctctgtgggaaatgaacacctgacc
atatatatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132846542_132847515
seq2: B6Ng01-316N04.b_44_1016 (reverse)

seq1  CCCCCCCCCCAGCCCCAATCTATCACTTCAGATCTCCAAACACAACCCTG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAAGCCCCAATCTATCACTTCAGATCTCCAAACACAACCCTG  50

seq1  CATTGCACTTCCTCGCCCTGGGACACTGCACCTCTCTTGCAGTCTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACTTCCTCGCCCTGGGACACTGCACCTCTCTTGCAGTCTGGAAA  100

seq1  CGCCTTGAAGCTTGTGGAGACTTTATTTGGGAACACAGGGTCTTTGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGAAGCTTGTGGAGACTTTATTTGGGAACACAGGGTCTTTGTCTA  150

seq1  GACCTGATGAGGCACAGCCAGCTATCCCAGCTTGGCTCTTCCCACAGCTA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CTGATGAGGCACAGCCAGCTATCCCAGCTTGGCTCTTCCCACAGCTA  199

seq1  CAAAGATTTTGTTGTTGTTGTTGTTTATTTTTTTGAGACAGGGTTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTTGTTGTTGTTGTTGTTTATTTTTTTGAGACAGGGTTTCTCT  249

seq1  GTGTAGCCCTGGCTGTCCTTGGAACTCACTCTGTAGACCAGGCTGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCTGGCTGTCCTTGGAACTCACTCTGTAGACCAGGCTGGCCTT  299

seq1  GAACTCAGCCACAAAGATTCTTAGTTTCACAGTAGAACTGTTCTCGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGCCACAAAGATTCTTAGTTTCACAGTAGAACTGTTCTCGTGGC  349

seq1  ACTAGCAACCCCTAAACTGTATCAAGGATCTTACAGTGCCCTGGCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAACCCCTAAACTGTATCAAGGATCTTACAGTGCCCTGGCAGGGT  399

seq1  GCTGACAGCGAAGAGGAATGTTTTAAGTCTACTGACCATTACGAGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGCGAAGAGGAATGTTTTAAGTCTACTGACCATTACGAGAACAG  449

seq1  TCAGCTTGAGGAAGCCTGCAGTCTAATTATGAGACTACATCACACTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGAGGAAGCCTGCAGTCTAATTATGAGACTACATCACACTGCTT  499

seq1  TTGACGATACCCTTTCAAGAAGCTGGGTTTTAGCTGGCTTTAGTAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGATACCCTTTCAAGAAGCTGGGTTTTAGCTGGCTTTAGTAACAAT  549

seq1  ACCTTTAACCCAGCACTGGGGAGGCAGCTGTATCTCTAAGTTCAAGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACCCAGCACTGGGGAGGCAGCTGTATCTCTAAGTTCAAGATTC  599

seq1  CTGGTCTACCAGGACAGCCAGAGCTACATAATACAGTGGCCCTGTCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACCAGGACAGCCAGAGCTACATAATACAGTGGCCCTGTCTCAA  649

seq1  AAACAAATTTGGGTTTTTAGCAGTCACTTTAGTAAAAATGAATTGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTTGGGTTTTTAGCAGTCACTTTAGTAAAAATGAATTGATGTG  699

seq1  GAGTTGGAACTATGAGAGGTGGTATCTGCTTTGAATAAAAGTCTGAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAACTATGAGAGGTGGTATCTGCTTTGAATAAAAGTCTGAGAGG  749

seq1  CTTCGAAGCACCCAGCAAGCACACAGATGCCAACTGGAACTGGCTATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAAGCACCCAGCAAGCACACAGATGCCAACTGGAACTGGCTATCAA  799

seq1  AAGATAGGGCAAGGGTGTGACTCAGTGGAAAGTGCTCTGGGGTCCATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGGCAAGGGTGTGACTCAGTGGAAAGTGCTCTGGGGTCCATCCC  849

seq1  TACTGTGCAATAAACTGCATCACATTAACTAGGTGTGGTGGTGTATGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCAATAAACTGCATCACATTAACTAGGTGTGGTGGTGTATGCCC  899

seq1  ATGATCCCAGCACTCAGGGGACAGAGACAGGAGGATCATAAGTTAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCAGCACTCAGGGGACAGAGACAGGAGGATCATAAGTTAAAGAT  949

seq1  AACTATTGACTACCTAGTGAATTC  974
      ||||||||||||||||||||||||
seq2  AACTATTGACTACCTAGTGAATTC  973

seq1: chr4_132693553_132693994
seq2: B6Ng01-316N04.g_67_508

seq1  GAATTCAAAAGGGAACAAAGCACAAGTAGATACATTGAAGGTTTGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGGAACAAAGCACAAGTAGATACATTGAAGGTTTGGAGGG  50

seq1  AGGAAAGGAAGGGAGACATGATGTAAGTATATTATTATTTTAAAAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAGGGAGACATGATGTAAGTATATTATTATTTTAAAAAATTG  100

seq1  TTTTACTCCCAATCCCAAATCAGACAAGTTAGAAAATTCCTTTCCCTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCCCAATCCCAAATCAGACAAGTTAGAAAATTCCTTTCCCTTAC  150

seq1  TGTGAGCTGCTGCTGCTGCTTTTTTTCTTCCTCCTTTTCCTCCTCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCTGCTGCTGCTTTTTTTCTTCCTCCTTTTCCTCCTCCTCCT  200

seq1  CTTTTTTCCAAGATAGGTTTTTCTGTAGCCCCAGGTATCCTGGAACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCAAGATAGGTTTTTCTGTAGCCCCAGGTATCCTGGAACTCAG  250

seq1  AGAGATTCTATTGCAAGTGTCTCCCAAGTGCTGTGATCAAAGGCATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTATTGCAAGTGTCTCCCAAGTGCTGTGATCAAAGGCATGTGC  300

seq1  CATCACACCTGGTTTACTATGTGCTTCTTAAGAATAGGACGTAATGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACCTGGTTTACTATGTGCTTCTTAAGAATAGGACGTAATGTTAT  350

seq1  CCTCCCTTCCTCCTTCCCTCCTTCCCTCCCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCTTCCCTCCTTCCCTCCCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGAAATGAAC  442
      ||||||||||||||||||||||||||||| | ||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGGAAATGAAC  442