BAC Information

Click to search

BAC

Clone NameB6Ng01-316P13
Chromosome4 (Build37)
Map Location 68,930,727 - 69,085,974
singlet/doubletdoublet
Overlap genenone
Upstream geneTcp1-ps1, Dbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316P13.bB6Ng01-316P13.g
ACCGA107234GA107235
length1,0741,014
definitionB6Ng01-316P13.b B6Ng01-316P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,930,727 - 68,931,799)(69,084,951 - 69,085,974)
sequence
gaattcactctggaagatttaatttactagattaggaagtgatttgctag
cttaaaacctttgcagctgtgtatctactataattggctacctttaccca
ccaattatgaatctccctgtatagtcacctatggctcatctcatatcagt
ccttgagctatcaaagttaaagaacaacatacacactaactatacacact
aactttctttatttcccaaaaggtgattcatccacgtattcagctctact
tccccatgaccagtctcttgaggtcaaacattgtcatattcttaattaca
cccctccccacttcccattacaaaacagagatatggtgacaagatgggat
ggccttggtacagaaatatatgcgtctattctatgaacctgatgttttga
tgctcagcttgcaaaagcagaagacagagatcaccatccccagtgggacg
gcaaccatctcagaaacatttgctgacaaatgaagctcctgtgagctcca
tttctgcacttttcctggctatcttctgaatttcagctttgatagttgta
gcactggctctaaatcaaggaggtaagcagtcttaccaactgacgttttc
taagcatatatttatatttttatgtggactataatgtatatttttcacac
actgttcccttgtacaatgcttctatggcatgtagaaggaaagttagctt
tctaagtttattttgagtgtgctggcacagttagcttcagagctggacta
tgccaattcccagattccaagggagttttagtttcttcactttttttttt
tttaaagaagggaggtttctggacaattaaaagattgttttattttatag
acaaaggtatatatggtggaatatacttgccctaaaacacaaatcttgcc
tttctttggagtacttcgtgttcatgtgatatttactcctgtgtcttagt
tctcatataaatatgtaacaaaagatggcctaatcggccatcactggaaa
gagaggcccattggacacgtaaactttgtatgcctcagtacagggaacgc
cagggccaaaaaggggggagtggg

gaattctcctatttagttgtttcttcatatgtacttttgtattatttact
ttaaataggattcctatttttgtttctgtttcagatagcacatttctggt
atatgacaatgacacagagattttacttatttcctctgactggcacttct
tatgtggcattggaaaaaagcaggaagctttctctgcccagatattagaa
agatgttttcttatttttgtccaaatagttgatgctattttatggccaat
tacatataatcttattattttaaggcttgaagaattatattatcatttgt
tatgaaattataagaaactattaattgtattactgaatttattttaattt
atactataatccttaaatctattcattgatattgaatgtattgattgata
tgtgttcattttgattactctcacttctctttcttatctttctcactaca
ctgaaacctcactcttccatacaaattattttccaatgttcatgtctttt
tgtcttgttcttactttaagcaggggtgcccccatggccatgagtgtata
attattgaatgtagtatgatgggatcatcagtgggcacaaagattcctgt
tttttttttccattgctgtgatatacactatgactcaaaccatctctatg
attatatctcatcattgttagaagttaggagagcagaaaatcaaacagaa
gacaaaaccaaaaccaaacaggcaaagtggtgagtgaacagagaaggcaa
acaggtgctcacagcagcaacagaaaggagggggtaggggcttagaaaag
gcagagagagtgagggcaacagaggggaagcagaacagtaaagagaggaa
tgcaggactggaaggaacccatttaaaatgaaacagaatccctggctggc
tttgtggggaggtggggttgccttctacattcctaatccatctttagggc
tgggtgttcatcccaattctgtgacctccctcctctagcttctcaagctg
ttattttatcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68930727_68931799
seq2: B6Ng01-316P13.b_49_1122

seq1  GAATTCACTCTGGAAGATTTAATTTACTAGATTAGGAAGTGATTTGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGGAAGATTTAATTTACTAGATTAGGAAGTGATTTGCTAG  50

seq1  CTTAAAACCTTTGCAGCTGTGTATCTACTATAATTGGCTACCTTTACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACCTTTGCAGCTGTGTATCTACTATAATTGGCTACCTTTACCCA  100

seq1  CCAATTATGAATCTCCCTGTATAGTCACCTATGGCTCATCTCATATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATGAATCTCCCTGTATAGTCACCTATGGCTCATCTCATATCAGT  150

seq1  CCTTGAGCTATCAAAGTTAAAGAACAACATACACACTAACTATACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCTATCAAAGTTAAAGAACAACATACACACTAACTATACACACT  200

seq1  AACTTTCTTTATTTCCCAAAAGGTGATTCATCCACGTATTCAGCTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTTATTTCCCAAAAGGTGATTCATCCACGTATTCAGCTCTACT  250

seq1  TCCCCATGACCAGTCTCTTGAGGTCAAACATTGTCATATTCTTAATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGACCAGTCTCTTGAGGTCAAACATTGTCATATTCTTAATTACA  300

seq1  CCCCTCCCCACTTCCCATTACAAAACAGAGATATGGTGACAAGATGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCACTTCCCATTACAAAACAGAGATATGGTGACAAGATGGGAT  350

seq1  GGCCTTGGTACAGAAATATATGCGTCTATTCTATGAACCTGATGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTACAGAAATATATGCGTCTATTCTATGAACCTGATGTTTTGA  400

seq1  TGCTCAGCTTGCAAAAGCAGAAGACAGAGATCACCATCCCCAGTGGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCTTGCAAAAGCAGAAGACAGAGATCACCATCCCCAGTGGGACG  450

seq1  GCAACCATCTCAGAAACATTTGCTGACAAATGAAGCTCCTGTGAGCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATCTCAGAAACATTTGCTGACAAATGAAGCTCCTGTGAGCTCCA  500

seq1  TTTCTGCACTTTTCCTGGCTATCTTCTGAATTTCAGCTTTGATAGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCACTTTTCCTGGCTATCTTCTGAATTTCAGCTTTGATAGTTGTA  550

seq1  GCACTGGCTCTAAATCAAGGAGGTAAGCAGTCTTACCAACTGACGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGCTCTAAATCAAGGAGGTAAGCAGTCTTACCAACTGACGTTTTC  600

seq1  TAAGCATATATTTATATTTTTATGTGGACTATAATGTATATTTTTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATATATTTATATTTTTATGTGGACTATAATGTATATTTTTCACAC  650

seq1  ACTGTTCCCTTGTACAATGCTTCTATGGCATGTAGAAGGAAAGTTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCCTTGTACAATGCTTCTATGGCATGTAGAAGGAAAGTTAGCTT  700

seq1  TCTAAGTTTATTTTGAGTGTGCTGGCACAGTTAGCTTCAGAGCTGGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTATTTTGAGTGTGCTGGCACAGTTAGCTTCAGAGCTGGACTA  750

seq1  TGCCAATTCCCAGATTCCAAGGGAGTTTTAGTTTCTTCACTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCCCAGATTCCAAGGGAGTTTTAGTTTCTTCACTTTTTTTTTT  800

seq1  TTTAAAGAAGGGAGGTTTCTGGACAATTAAAAGATTGTTTTATTTTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGGGAGGTTTCTGGACAATTAAAAGATTGTTTTATTTTATAG  850

seq1  AC-AAGGTATATATGGTGGAATATACTTGCCCTAAAACACAAATCTTGCC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTATATATGGTGGAATATACTTGCCCTAAAACACAAATCTTGCC  900

seq1  TTTCTTTGGAGTACTTCGTGTTCATGTGATATTTACTCCTGTGTCTTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGAGTACTTCGTGTTCATGTGATATTTACTCCTGTGTCTTAGT  950

seq1  TCTCATATAAATATGTAACAAAAGATGGCCTAATCGGCCATCACTGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATAAATATGTAACAAAAGATGGCCTAATCGGCCATCACTGGAAA  1000

seq1  GAGAGGCCCATTGGACACGTAAACTTTGTATGCCCCAGTACAGGGGAACG  1049
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GAGAGGCCCATTGGACACGTAAACTTTGTATGCCTCAGTACA-GGGAACG  1049

seq1  CCAGGGCCAAAAA-GGGGGAGTGGG  1073
      ||||||||||||| |||||||||||
seq2  CCAGGGCCAAAAAGGGGGGAGTGGG  1074


seq1: chr4_69084951_69085974
seq2: B6Ng01-316P13.g_66_1079 (reverse)

seq1  ACAAGATAAAAAATAAAACCAGCTTGAGAAAAGCTAGA-GAGGGAGTTCA  49
      |||||||  |||||||   |||||||||  |||||||| ||||||| |||
seq2  ACAAGAT--AAAATAA---CAGCTTGAG--AAGCTAGAGGAGGGAGGTCA  43

seq1  CAGAAATGGGATGAAACACCCAGCCCTAAAGATGGATTAGGGAATGTAGA  99
      ||||| ||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CAGAATTGGGATG-AACACCCAGCCCTAAAGATGGATTA-GGAATGTAGA  91

seq1  AAGCAACCCCACCTCCCCACAAAGCCAGCCAGGGATTCTGTTTCATTTTA  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACCCCACCTCCCCACAAAGCCAGCCAGGGATTCTGTTTCATTTTA  141

seq1  AATGGGTTCCTTCCAGTCCCTGCATTCCTCTCTTTACTGTTCCTGCTTCC  199
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  AATGGGTTCCTTCCAGT-CCTGCATTCCTCTCTTTACTGTT-CTGCTTCC  189

seq1  CCTCTGTTGCCCTCACTCTCTCTGCCTTTTCTAAGCCCCTACCCCCTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTGCCCTCACTCTCTCTGCCTTTTCTAAGCCCCTACCCCCTCCT  239

seq1  TTCTGTTGCTGCTGTGAGCACCTGTTTGCCTTCTCTGTTCACTCACCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGCTGCTGTGAGCACCTGTTTGCCTTCTCTGTTCACTCACCACT  289

seq1  TTGCCTGTTTGGTTTTGGTTTTGTCTTCTGTTTGATTTTCTGCTCTCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTTTGGTTTTGGTTTTGTCTTCTGTTTGATTTTCTGCTCTCCTA  339

seq1  ACTTCTAACAATGATGAGATATAATCATAGAGATGGTTTGAGTCATAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAACAATGATGAGATATAATCATAGAGATGGTTTGAGTCATAGTG  389

seq1  TATATCACAGCAATGGAAAAAAAAAACAGGAATCTTTGTGCCCACTGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACAGCAATGGAAAAAAAAAACAGGAATCTTTGTGCCCACTGATG  439

seq1  ATCCCATCATACTACATTCAATAATTATACACTCATGGCCATGGGGGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCATACTACATTCAATAATTATACACTCATGGCCATGGGGGCAC  489

seq1  CCCTGCTTAAAGTAAGAACAAGACAAAAAGACATGAACATTGGAAAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTAAAGTAAGAACAAGACAAAAAGACATGAACATTGGAAAATAA  539

seq1  TTTGTATGGAAGAGTGAGGTTTCAGTGTAGTGAGAAAGATAAGAAAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGAAGAGTGAGGTTTCAGTGTAGTGAGAAAGATAAGAAAGAGA  589

seq1  AGTGAGAGTAATCAAAATGAACACATATCAATCAATACATTCAATATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGTAATCAAAATGAACACATATCAATCAATACATTCAATATCAA  639

seq1  TGAATAGATTTAAGGATTATAGTATAAATTAAAATAAATTCAGTAATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGATTTAAGGATTATAGTATAAATTAAAATAAATTCAGTAATACA  689

seq1  ATTAATAGTTTCTTATAATTTCATAACAAATGATAATATAATTCTTCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTTTCTTATAATTTCATAACAAATGATAATATAATTCTTCAAG  739

seq1  CCTTAAAATAATAAGATTATATGTAATTGGCCATAAAATAGCATCAACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAATAATAAGATTATATGTAATTGGCCATAAAATAGCATCAACTA  789

seq1  TTTGGACAAAAATAAGAAAACATCTTTCTAATATCTGGGCAGAGAAAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAAAAATAAGAAAACATCTTTCTAATATCTGGGCAGAGAAAGCT  839

seq1  TCCTGCTTTTTTCCAATGCCACATAAGAAGTGCCAGTCAGAGGAAATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTTTTCCAATGCCACATAAGAAGTGCCAGTCAGAGGAAATAAG  889

seq1  TAAAATCTCTGTGTCATTGTCATATACCAGAAATGTGCTATCTGAAACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCTGTGTCATTGTCATATACCAGAAATGTGCTATCTGAAACAG  939

seq1  AAACAAAAATAGGAATCCTATTTAAAGTAAATAATACAAAAGTACATATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATAGGAATCCTATTTAAAGTAAATAATACAAAAGTACATATG  989

seq1  AAGAAACAACTAAATAGGAGAATTC  1024
      |||||||||||||||||||||||||
seq2  AAGAAACAACTAAATAGGAGAATTC  1014


| Home | SequenceCutter | Blast | Download |