BAC Information

Click to search

BAC

Clone NameB6Ng01-320D06
Chromosome4 (Build37)
Map Location 68,941,378 - 69,122,895
singlet/doubletdoublet
Overlap genenone
Upstream geneTcp1-ps1, Dbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320D06.bB6Ng01-320D06.g
ACCGA109634GA109635
length1,1731,076
definitionB6Ng01-320D06.b B6Ng01-320D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,121,726 - 69,122,895)(68,941,378 - 68,942,455)
sequence
gaattctttagatgcaattcaagcagccacattttgtatgcccaagtgaa
acttgtgttttgtggagggtaaatgaaagacattgtagccattgaagatc
aagagctagcagctgatggcacatgatattgtggggtaaattctcctcat
actatgttgccaagagagaattatgagtacttgggaatagtgctttgggg
atccaccgagagaacactcagtaagtggtatagatcttcagacatgggat
ccattaggtattagattcaatttaaataccacagcacctggatgtggcat
gctgagccaatggtgatggttcctccatctctaacttttctttctttttt
tttaattagatattttcttcatttacattttaaatgctatcccctttact
agtttcctctctgaaagtccactatagcttcccccggctctgctccccaa
cccacccactcctgcttcctggccctggcacacatgtactggggttccaa
gaccaaaggcctctcctaccttttctattgctgctgtgcctcatcttcct
ctggctttgtctctgttttcaaggtgggatcacaatcaagtgactgatta
tttagctattttatagagaggttttgattaatactaagtcaccttcgatt
ttctctccctcttccctttcttttttaacttgtggtcctcacttattcat
gtgcctgcttctataggctctaaactcagggaacctgggctgcataggag
aggaagacaaagatcttcttgggtcctttaggcagcaagaagaaaagaaa
gtttaaatttaaaaaggtatgaaaccaattattctctttagtacccacta
tgtacgaggctctttggtaggtgctgcatatagaaactgcagacttcttg
cataatgatactcactggtcttataattatggtctaaactgttaattttt
ctggacttcaatgttccttcctacacaattgtgataacaacatttaattt
gaagtgtttaagaataattaagtgaatgaatactttgaggaccataaaga
ttattctgggctttattgtagaacttcaataatgttaagctatggtttac
ctactatcctagttttctttggccctcccaatacctagaatgattccact
caattatccttattttacagaca

gaattcaaggacagaattacttaagaattttgtgaagttggtttagaaca
taaactttagtcatttcatgaagaggcaggagaggcatattcttgttaat
atttatgaagtaggttcatttctaactaacatggggacagaaggttcgat
atagaaagatctcaggtagctactggtcaggccagagcaatagagtggga
ggcatattgaatttttcctagactttctcctgtatccagcctctaagcat
taggcatttggtctacaaagtaagtagctattaaagaaacgaaaggagaa
cctatcacacgtaaattattattacagtgagttctgtcttttaaactcct
taaaatactctttaaaatgtccttcctgttatagaaaagcaatggatttc
tctaggtacttacaacttggagtgccaaaactgagattctggtatatgca
gtaaaatatttagagaaatgagattgtttactcataaaatatatacccat
tttccaaggcttctgagatcaacatgcctttcccttcccaaagatagaag
ctttcttttaacttttccttttttattttcttatttatttatttatttat
ttatttatttatttttatttatttatttatttatttatttatttatttat
ttatttatttgcgattaacatcaatgtatatggaggctccttaggacagg
atcacctcaataatactatttagaaaggaaaatattttatcatataatct
ggaaatagtgatactttggcttctacctttccattttgtatccatttgac
ctctttttgttgtctaattgctctagatagaacttcaagaactatattga
ataaatagagagagaaaggcaaccttgtagagtccctgattttagtggga
ttgcttcaagcttctctctattagtttgatgttggctactggtttgctgc
atattgtttttactaagtttaagtaagggccttgaattctgatctttaca
atagttttagaatggagggagtgtagattttgtccaatgcttttcaccat
ctatgagatgatcatgtggttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_69121726_69122895
seq2: B6Ng01-320D06.b_47_1219 (reverse)

seq1  TGTCTGTAAAATAAGGATAA-TGAGTTTGATCATTTCTAGTTATTGTGAA  49
      |||||||||||||||||||| |||||   |||| |||||| ||||| || 
seq2  TGTCTGTAAAATAAGGATAATTGAGTGGAATCA-TTCTAGGTATTGGGAG  49

seq1  GGCCAAAGAAAACTAGGATAGTA-GTAAA-CATAGCTTACATTTATTGAA  97
      ||||||||||||||||||||||| ||||| |||||||||   ||||||||
seq2  GGCCAAAGAAAACTAGGATAGTAGGTAAACCATAGCTTAACATTATTGAA  99

seq1  GTTCTACCAATAAG-CCAG-ATAATCTTTTATGTGTCTTCAAAGTATTCA  145
      ||||||| |  ||| |||| |||||| |||||| ||| ||||||||||||
seq2  GTTCTACAATAAAGCCCAGAATAATC-TTTATG-GTCCTCAAAGTATTCA  147

seq1  TTCACTTAATTA-TCTTAAACACTTCAAATTAAATGTTGTTATCACAATT  194
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAATTATTCTTAAACACTTCAAATTAAATGTTGTTATCACAATT  197

seq1  GTGTAGGAAGGAACATTGAAGTCCAGAAAAATTAACAGTTTAGACCATAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAAGGAACATTGAAGTCCAGAAAAATTAACAGTTTAGACCATAA  247

seq1  TTATAAGACCAGTGAGTATCATTATGCAAGAAGTCTGCAGTTTCTATATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGACCAGTGAGTATCATTATGCAAGAAGTCTGCAGTTTCTATATG  297

seq1  CAGCACCTACCAAAGAGCCTCGTACATAGTGGGTACTAAAGAGAATAATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTACCAAAGAGCCTCGTACATAGTGGGTACTAAAGAGAATAATT  347

seq1  GGTTTCATACCTTTTTAAATTTAAACTTTCTTTTCTTCTTGCTGCCTAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATACCTTTTTAAATTTAAACTTTCTTTTCTTCTTGCTGCCTAAA  397

seq1  GGACCCAAGAAGATCTTTGTCTTCCTCTCCTATGCAGCCCAGGTTCCCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAAGAAGATCTTTGTCTTCCTCTCCTATGCAGCCCAGGTTCCCTG  447

seq1  AGTTTAGAGCCTATAGAAGCAGGCACATGAATAAGTGAGGACCACAAGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAGCCTATAGAAGCAGGCACATGAATAAGTGAGGACCACAAGTT  497

seq1  AAAAAAGAAAGGGAAGAGGGAGAGAAAATCGAAGGTGACTTAGTATTAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGGGAAGAGGGAGAGAAAATCGAAGGTGACTTAGTATTAAT  547

seq1  CAAAACCTCTCTATAAAATAGCTAAATAATCAGTCACTTGATTGTGATCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCTCTATAAAATAGCTAAATAATCAGTCACTTGATTGTGATCC  597

seq1  CACCTTGAAAACAGAGACAAAGCCAGAGGAAGATGAGGCACAGCAGCAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAAAACAGAGACAAAGCCAGAGGAAGATGAGGCACAGCAGCAAT  647

seq1  AGAAAAGGTAGGAGAGGCCTTTGGTCTTGGAACCCCAGTACATGTGTGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTAGGAGAGGCCTTTGGTCTTGGAACCCCAGTACATGTGTGCC  697

seq1  AGGGCCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGAGCCGGGGGAAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGAGCCGGGGGAAGC  747

seq1  TATAGTGGACTTTCAGAGAGGAAACTAGTAAAGGGGATAGCATTTAAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGGACTTTCAGAGAGGAAACTAGTAAAGGGGATAGCATTTAAAAT  797

seq1  GTAAATGAAGAAAATATCTAATTAAAAAAAAAGAAAGAAAAGTTAGAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAAGAAAATATCTAATTAAAAAAAAAGAAAGAAAAGTTAGAGAT  847

seq1  GGAGGAACCATCACCATTGGCTCAGCATGCCACATCCAGGTGCTGTGGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACCATCACCATTGGCTCAGCATGCCACATCCAGGTGCTGTGGTA  897

seq1  TTTAAATTGAATCTAATACCTAATGGATCCCATGTCTGAAGATCTATACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAATCTAATACCTAATGGATCCCATGTCTGAAGATCTATACC  947

seq1  ACTTACTGAGTGTTCTCTCGGTGGATCCCCAAAGCACTATTCCCAAGTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGAGTGTTCTCTCGGTGGATCCCCAAAGCACTATTCCCAAGTAC  997

seq1  TCATAATTCTCTCTTGGCAACATAGTATGAGGAGAATTTACCCCACAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTCTCTCTTGGCAACATAGTATGAGGAGAATTTACCCCACAATA  1047

seq1  TCATGTGCCATCAGCTGCTAGCTCTTGATCTTCAATGGCTACAATGTCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCCATCAGCTGCTAGCTCTTGATCTTCAATGGCTACAATGTCTT  1097

seq1  TCATTTACCCTCCACAAAACACAAGTTTCACTTGGGCATACAAAATGTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCCTCCACAAAACACAAGTTTCACTTGGGCATACAAAATGTGG  1147

seq1  CTGCTTGAATTGCATCTAAAGAATTC  1170
      ||||||||||||||||||||||||||
seq2  CTGCTTGAATTGCATCTAAAGAATTC  1173


seq1: chr4_68941378_68942455
seq2: B6Ng01-320D06.g_68_1143

seq1  GAATTCAAGGACAGAATTACTTAAGAATTTTGTGAAGTTGGTTTAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGAATTACTTAAGAATTTTGTGAAGTTGGTTTAGAACA  50

seq1  TAAACTTTAGTCATTTCATGAAGAGGCAGGAGAGGCATATTCTTGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAGTCATTTCATGAAGAGGCAGGAGAGGCATATTCTTGTTAAT  100

seq1  ATTTATGAAGTAGGTTCATTTCTAACTAACATGGGGACAGAAGGTTCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAGTAGGTTCATTTCTAACTAACATGGGGACAGAAGGTTCGAT  150

seq1  ATAGAAAGATCTCAGGTAGCTACTGGTCAGGCCAGAGCAATAGAGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGATCTCAGGTAGCTACTGGTCAGGCCAGAGCAATAGAGTGGGA  200

seq1  GGCATATTGAATTTTTCCTAGACTTTCTCCTGTATCCAGCCTCTAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTGAATTTTTCCTAGACTTTCTCCTGTATCCAGCCTCTAAGCAT  250

seq1  TAGGCATTTGGTCTACAAAGTAAGTAGCTATTAAAGAAACGAAAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTTGGTCTACAAAGTAAGTAGCTATTAAAGAAACGAAAGGAGAA  300

seq1  CCTATCACACGTAAATTATTATTACAGTGAGTTCTGTCTTTTAAACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACACGTAAATTATTATTACAGTGAGTTCTGTCTTTTAAACTCCT  350

seq1  TAAAATACTCTTTAAAATGTCCTTCCTGTTATAGAAAAGCAATGGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTCTTTAAAATGTCCTTCCTGTTATAGAAAAGCAATGGATTTC  400

seq1  TCTAGGTACTTACAACTTGGAGTGCCAAAACTGAGATTCTGGTATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTACTTACAACTTGGAGTGCCAAAACTGAGATTCTGGTATATGCA  450

seq1  GTAAAATATTTAGAGAAATGAGATTGTTTACTCATAAAATATATACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATTTAGAGAAATGAGATTGTTTACTCATAAAATATATACCCAT  500

seq1  TTTCCAAGGCTTCTGAGATCAACATGCCTTTCCCTTCCCAAAGATAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGCTTCTGAGATCAACATGCCTTTCCCTTCCCAAAGATAGAAG  550

seq1  CTTTCTTTTAACTTTTCCTTTTTTATTTTCTTATTTATTTATTTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTAACTTTTCCTTTTTTATTTTCTTATTTATTTATTTATTTAT  600

seq1  TTATTTATTTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTAT  650

seq1  TTATTTATTTGCGATTAACATCAATGTATATGGAGGCTCCTTAGGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTGCGATTAACATCAATGTATATGGAGGCTCCTTAGGACAGG  700

seq1  ATCACCTCAATAATACTATTTAGAAAGGAAAATATTTTATCATATAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCAATAATACTATTTAGAAAGGAAAATATTTTATCATATAATCT  750

seq1  GGAAATAGTGATACTTTGGCTTCTACCTTTCCATTTTGTATCCATTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGTGATACTTTGGCTTCTACCTTTCCATTTTGTATCCATTTGAC  800

seq1  CTCTTTTTGTTGTCTAATTGCTCTAGATAGAACTTCAAGAACTATATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGTTGTCTAATTGCTCTAGATAGAACTTCAAGAACTATATTGA  850

seq1  ATAAATAGAGAGAG-AAGGCAACCTTGTAGAGTCCCTGATTTTAGTGGGA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAGAGAGAAAGGCAACCTTGTAGAGTCCCTGATTTTAGTGGGA  900

seq1  TTGCTTCAAGCTTCTCTCTATTTAGTTTGATGTTGGCTACTGGTTTGCTG  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGCTTCAAGCTTCTCTCTA-TTAGTTTGATGTTGGCTACTGGTTTGCTG  949

seq1  CATATTGTTTTTACTAAGTTTAAGTAAGGGCCTTGAATTTCTGATCTTTA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATATTGTTTTTACTAAGTTTAAGTAAGGGCCTTGAA-TTCTGATCTTTA  998

seq1  CAATAGTTTTAGAAT-GAGGGAGTGTAGAATTTTGTCAAATGCTTTTCAA  1048
      ||||||||||||||| |||||||||||| |||||||| ||||||||||| 
seq2  CAATAGTTTTAGAATGGAGGGAGTGTAG-ATTTTGTCCAATGCTTTTCAC  1047

seq1  CATCTAATGAGATGATCATGTGGTTTTTTT  1078
      ||||| ||||||||||||||||||||||||
seq2  CATCT-ATGAGATGATCATGTGGTTTTTTT  1076


| Home | SequenceCutter | Blast | Download |