BAC Information

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BAC

Clone NameB6Ng01-320H06
Chromosome4 (Build37)
Map Location 28,339,300 - 28,339,540
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
Downstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320H06.bB6Ng01-320H06.g
ACCGA109815GA109816
length1,0331,187
definitionB6Ng01-320H06.b B6Ng01-320H06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcgtctaaagagagagagatcgttcaggtgtccatcaagtgat
acatgtgcatttccactgaatggtgacaatgggtgtgaagtgcacccccc
agacaaagtacaggggaacacgttcaatttctgatattcttattttggaa
tctgtgctctaggtgagccaaggcggggcagtaggatacattcttgcttt
ctgacataaaacgccaacatttttatgttcagttcaacatttaaaaatat
ttttttgaagtatgtgaatcatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
ctgtctgtctgtctgtctgtctgtctgtgtgtgtgtcacaagcacttgaa
agtcacctgccttgaattctgggaattgaactcaggtcctctgggaaagc
agcacattgttaaccactgcaccatctctccagctcaagcatttctcagt
taaatgtacatacactaaagtatcttcaagtcctctcttctggttggttt
tttgtcaacttgacacaaacctagacatgttggggaaagaagcctcaatt
aagaaaattcccctatcagactgtaggcaagcctgggagcattttcctaa
tgactgactggtgaaggagtcttatacgcgttctcacgaccggccaggaa
agacacaacaaaccagaatcttctgcggcaaaactttactgcttacatct
tcaggagcaggagcgcaaaaaccccaagccccaaaaacgaaagccccctt
cttacatctttaggagccagagcgccagcgcaagcaagagagcgcaagta
agagagagaatggcggaaaccccgtccccttttaaggagaattattcttt
gcctaggacgcatcactccctgattggctgcagcccatgggccgagttga
cgtcacgggaaagacagagtacatgtagtggtaaaataccctttggcaca
tgcgcagattatttgtttaccacttagaacacaggatgtcagcgccatct
tgtgacgccgaatgtggggggcggctcccaaca

gaattcaacaaagcagtaaaaacattgaaggggaaaattagtctgaacag
gtgagagggtgtgccagagaaccggacagcttctgagacaggcggaagca
cagagccgctgaggcagcacccttggcgggccgcagacagccggccaccg
tccggaccagaggacaggtgtccacctcgcttgggaggcggcctcagcct
cagcagcagcggtcaccatcctggttccgggactcagcagaacttaggaa
atttgtctgaacaggtgagagggtgtgccagagaaccagacaggttctgg
gacaggcggaagcacagagccgctgaggcagcacccttggcgggccgcag
acagccggccaccgtctggaccagaggacaggtgtctgcctggctcggga
ggcagcctcagcctcagcagcagcggtcgccatcttggttccgggactcc
ctggaacttaggaatttagtctgcacaggtgagagtctgcaccacagaag
ctgacagcttctgggaactgccaaagcaacacagcttctgagaaaggccc
tgttttgggccttcttcttccgcacaccttccctgtaagagagcttgcca
gcagagagtgctctgagcactgaaactcagaggagagaatctgtctccca
ggtaggctgatagacggtaacagaatcaccagaagaacaatctctaaaca
gagtcaactataactactaactccagagattaccagatggcgaaaggtaa
acgtaggaatcttactaacaggaaccaagaccactcaccatcatcagaac
ccagcactcccacttcgtccagaccaggacaccccaacacacccgaaaac
ctagacctagatttaaaagcatttctcatgatgatggtagaggacatcaa
gaaggactttaataaatcacttaaagaaatacaggagaaacactgcttaa
agagttacaagttccttaaagaaaaaacaggaaaacacaattcaaacggt
agaagttccttacagaaaaaagaggaaaaaaacatacaacagttgattgt
aatgaaacaaaacatactagacttaaaaggaagtaagacaccagttaaga
aacctcaagttgaggccaacactggagaaatagaaatccctaggcaggaa
atcttgaaacattaggattttgggagcatattctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28339300_28339540
seq2: B6Ng01-320H06.b_764_1075 (reverse)

seq1  TGTTGGGAGCCG-CCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  49
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCCCCACATTCGGCGTCACAAGATGGCGCTGACATCC  50

seq1  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCC-AAGAGTAATT  98
      ||||||||||||||||||||||||||||||||||||||| ||| ||| ||
seq2  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAAGGGTATTT  100

seq1  TTCCACTACATGTACTCTGCCTTT------------ACTCGG-CCATGGG  135
      | ||||||||||||||||| ||||            |||||| |||||||
seq2  TACCACTACATGTACTCTGTCTTTCCCGTGACGTCAACTCGGCCCATGGG  150

seq1  CTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAGGATAACTCTCC-T  184
      ||||||||||||||||||||||||||||||||| ||| |||| ||||| |
seq2  CTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAAAGAATAATTCTCCTT  200

seq1  AAATAGGGACAGGGTTT---------------------------------  201
      |||  ||||| ||||||                                 
seq2  AAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTTACTTGCGCTCTCTTGC  250

seq1  ---CGCTTTCGTTTTG-------------------GGGGCCTTTCGTTTT  229
         ||||  || | ||                   |||| ||||||||||
seq2  TTGCGCTGGCGCTCTGGCTCCTAAAGATGTAAGAAGGGGGCTTTCGTTTT  300

seq1  TGGGGCTTGGGG  241
      ||||||||||||
seq2  TGGGGCTTGGGG  312


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