BAC Information

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BAC

Clone NameB6Ng01-323A13
Chromosome4 (Build37)
Map Location 136,084,213 - 136,192,525
singlet/doubletdoublet
Overlap geneLuzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
Upstream gene4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneEphb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A13.bB6Ng01-323A13.g
ACCGA111718GA111719
length9771,161
definitionB6Ng01-323A13.b B6Ng01-323A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,084,213 - 136,085,036)(136,191,349 - 136,192,525)
sequence
gaattctttccaccttactcaacctgactgatctcttcctccttcccctg
gctggcagaagtcctgccctattctctgttttgcccagccattgggtaat
cagcatttattgacaaagcagagaataaatggtaagaattgtttacacag
acttgagagaggagattcttgacacaagtattacaatgccatgtctggat
tgaaataaaatacgagggcggagaagtcagcgtttgaataatacaaggat
aacctttacacagtgcattatgtctacattccaccttttttgtctaataa
aaaacaaatattagacagaagactcataataatctatatacagtgataac
aattattatgactaatcaggtaagattcatgttatatctagtccataact
atttgccaattttgtagttatattctattgtccatcctaacttggtgaat
ttagagttttgtacctaaatcattttctatcataacttgtcttattgacc
taaagcatcttctaagacataaaacattttcttaaatcctatataattta
agatttattctgaaactttatctagtcttttcccctatcacagacctgag
aaggaataaatattacttgagtatgtaggaagtacaggccagcagcttct
gaaactatagaaatgacagaggagcaggttgtctgggaagtcccccagaa
attctctaggattctatcttcagccttcatgcccagaatatctgacagac
cttttgtgaagcaagaagtatgaaggactgcttaccctaacttggcagag
cttggcagtcaacttccctgcatcctgtttgttctttctggatagcattt
tgtctgcagatgtagcatgggcagctttctgcccagtggcagcttgtcac
atttgagatgaactccatatggaggttctttgatgctcttttatcttctt
tgaagtggattagagatacttccagga
gaattctcagctcctccagcaccctatctgcctgcacactgccttgcttt
ccattatgatgatagtggactcaacctctgaagctgtaagccatttgaac
ttcaaatgaaatgttttcctttataaaagttgttttggtcatggtgtctc
tacacagcagtaaaaacctaacttaagatgtgtttgctgctgtagccaga
tgcagtctccttgattgcttctggtgtcttgtttttggttttggttggtt
gctttagaaaatctcattgtgtaacctaaactggcctgcatctctctagt
ccctgtctctgcttcccaaatgttatgattaagtagattcttttttgttt
ttttaagatttatttattttatgtataagaatgttctgtctgcatgtaca
cctgtgtgccagaagagggcatcagatcccattattgagagccactatgt
ggttgctaggaattgaagtcaggacctctggaagaacagccagttcttaa
ctgctgagccatctctccaacccccaagtagactcttaataaatccagtt
gatgagggacagggagactggaacagacctgggttctgggtccagctctc
ccaaaccttgctatgcttgcccctacaggctttagtctttctgggtatct
gatggactctattcagcgatccccagaaccttcctgactctgaccatctg
gtaggatgtgtggctggacttcagggcacgctcctcacctggttcctggg
tcagccaccaggacatcatccttgagcaggctcagagcctcctgggtgct
gcccctccacagcagtgaagtgccccggagtcttcggggaagtcctggga
aagagcagtggtcagacctgcaggacctgtgcactgctagagaagtccct
tccctagaacaacactcagtcatttcccccatgcctcccactgcagcagc
cacagctccccttcctagagcaaacattctgtctctttcttctctctact
cctccctccagtgtggattgccgcagatacacaaagcccagtccttcaca
gcattactacaatcctgaatatttaatactaggctggcagatgcttcctc
tgccttaaggtgctgccacaatctggattccaattccaaagatgccaatg
ggtggaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136084213_136085036
seq2: B6Ng01-323A13.b_45_868

seq1  GAATTCTTTCCACCTTACTCAACCTGACTGATCTCTTCCTCCTTCCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACCTTACTCAACCTGACTGATCTCTTCCTCCTTCCCCTG  50

seq1  GCTGGCAGAAGTCCTGCCCTATTCTCTGTTTTGCCCAGCCATTGGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGAAGTCCTGCCCTATTCTCTGTTTTGCCCAGCCATTGGGTAAT  100

seq1  CAGCATTTATTGACAAAGCAGAGAATAAATGGTAAGAATTGTTTACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTATTGACAAAGCAGAGAATAAATGGTAAGAATTGTTTACACAG  150

seq1  ACTTGAGAGAGGAGATTCTTGACACAAGTATTACAATGCCATGTCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGAGGAGATTCTTGACACAAGTATTACAATGCCATGTCTGGAT  200

seq1  TGAAATAAAATACGAGGGCGGAGAAGTCAGCGTTTGAATAATACAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAATACGAGGGCGGAGAAGTCAGCGTTTGAATAATACAAGGAT  250

seq1  AACCTTTACACAGTGCATTATGTCTACATTCCACCTTTTTTGTCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTACACAGTGCATTATGTCTACATTCCACCTTTTTTGTCTAATAA  300

seq1  AAAACAAATATTAGACAGAAGACTCATAATAATCTATATACAGTGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATATTAGACAGAAGACTCATAATAATCTATATACAGTGATAAC  350

seq1  AATTATTATGACTAATCAGGTAAGATTCATGTTATATCTAGTCCATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATGACTAATCAGGTAAGATTCATGTTATATCTAGTCCATAACT  400

seq1  ATTTGCCAATTTTGTAGTTATATTCTATTGTCCATCCTAACTTGGTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAATTTTGTAGTTATATTCTATTGTCCATCCTAACTTGGTGAAT  450

seq1  TTAGAGTTTTGTACCTAAATCATTTTCTATCATAACTTGTCTTATTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTTGTACCTAAATCATTTTCTATCATAACTTGTCTTATTGACC  500

seq1  TAAAGCATCTTCTAAGACATAAAACATTTTCTTAAATCCTATATAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATCTTCTAAGACATAAAACATTTTCTTAAATCCTATATAATTTA  550

seq1  AGATTTATTCTGAAACTTTATCTAGTCTTTTCCCCTATCACAGACCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTCTGAAACTTTATCTAGTCTTTTCCCCTATCACAGACCTGAG  600

seq1  AAGGAATAAATATTACTTGAGTATGTAGGAAGTACAGGCCAGCAGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAAATATTACTTGAGTATGTAGGAAGTACAGGCCAGCAGCTTCT  650

seq1  GAAACTATAGAAATGACAGAGGAGCAGGTTGTCTGGGAAGTCCCCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATAGAAATGACAGAGGAGCAGGTTGTCTGGGAAGTCCCCCAGAA  700

seq1  ATTCTCTAGGATTCTATCTTCAGCCTTCATGCCCAGAATATCTGACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAGGATTCTATCTTCAGCCTTCATGCCCAGAATATCTGACAGAC  750

seq1  CTTTTGTGAAGCAAGAAGTATGAAGGACTGCTTACCCTAACTTGGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGAAGCAAGAAGTATGAAGGACTGCTTACCCTAACTTGGCAGAG  800

seq1  CTTGGCAGTCAACTTCCCTGCATC  824
      ||||||||||||||||||||||||
seq2  CTTGGCAGTCAACTTCCCTGCATC  824

seq1: chr4_136191349_136192525
seq2: B6Ng01-323A13.g_65_1225 (reverse)

seq1  TTCTTTCCA-CCATGGGCATTTTGTGGATTGAACTCAAGGATTGTTGGCA  49
      ||||||||| |||| ||||| ||  | |||| | || | ||||| |||| 
seq2  TTCTTTCCACCCATTGGCATCTTTGGAATTGGAATCCA-GATTG-TGGC-  47

seq1  AGCACCTTTA-GCAGAGAAGCCATCTTGCCAGCCCTAAGTATTAAATATT  98
      |||||||| | |||||| |  |||| ||||||||   ||||||||||| |
seq2  AGCACCTTAAGGCAGAGGAAGCATC-TGCCAGCC--TAGTATTAAATA-T  93

seq1  TCAGGA-TGTAGTAAATGCCTGTGGAAGGGCTGGGCTTTGTGGTATCTGC  147
      |||||| |||||| |||| |||| ||||| ||||||||||| ||||||| 
seq2  TCAGGATTGTAGT-AATG-CTGT-GAAGGACTGGGCTTTGT-GTATCTG-  138

seq1  CGGCAATCCCAACACTTGGGAGGGA-GAGTAGAGAGAAGAAAGAGACAAG  196
      |||||||||  |||||  ||||||| ||||||||||||||||||||| ||
seq2  CGGCAATCC--ACACT--GGAGGGAGGAGTAGAGAGAAGAAAGAGAC-AG  183

seq1  AATGTTTGCTTCTAGGAAGGGGAGCTGGTGGCTGGCTGCAGTGGGAGGCA  246
      ||||||||| |||||||||||||||| |||||| ||||||||||||||||
seq2  AATGTTTGC-TCTAGGAAGGGGAGCT-GTGGCT-GCTGCAGTGGGAGGCA  230

seq1  TGGGGGAAATGACTGAGTGTTGTTCTAGGGAAGGGACTTCTCTAGCAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAATGACTGAGTGTTGTTCTAGGGAAGGGACTTCTCTAGCAGTG  280

seq1  CACAGGTCCTGCAGGTCTGACCACTGCTCTTTCCCAGGACTTCCCCGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCCTGCAGGTCTGACCACTGCTCTTTCCCAGGACTTCCCCGAAG  330

seq1  ACTCCGGGGCACTTCACTGCTGTGGAGGGGCAGCACCCAGGAGGCTCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGGGCACTTCACTGCTGTGGAGGGGCAGCACCCAGGAGGCTCTGA  380

seq1  GCCTGCTCAAGGATGATGTCCTGGTGGCTGACCCAGGAACCAGGTGAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCAAGGATGATGTCCTGGTGGCTGACCCAGGAACCAGGTGAGGA  430

seq1  GCGTGCCCTGAAGTCCAGCCACACATCCTACCAGATGGTCAGAGTCAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCCTGAAGTCCAGCCACACATCCTACCAGATGGTCAGAGTCAGGA  480

seq1  AGGTTCTGGGGATCGCTGAATAGAGTCCATCAGATACCCAGAAAGACTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGGGGATCGCTGAATAGAGTCCATCAGATACCCAGAAAGACTAA  530

seq1  AGCCTGTAGGGGCAAGCATAGCAAGGTTTGGGAGAGCTGGACCCAGAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGGGGCAAGCATAGCAAGGTTTGGGAGAGCTGGACCCAGAACC  580

seq1  CAGGTCTGTTCCAGTCTCCCTGTCCCTCATCAACTGGATTTATTAAGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTTCCAGTCTCCCTGTCCCTCATCAACTGGATTTATTAAGAGT  630

seq1  CTACTTGGGGGTTGGAGAGATGGCTCAGCAGTTAAGAACTGGCTGTTCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGGGGTTGGAGAGATGGCTCAGCAGTTAAGAACTGGCTGTTCTT  680

seq1  CCAGAGGTCCTGACTTCAATTCCTAGCAACCACATAGTGGCTCTCAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTCCTGACTTCAATTCCTAGCAACCACATAGTGGCTCTCAATAA  730

seq1  TGGGATCTGATGCCCTCTTCTGGCACACAGGTGTACATGCAGACAGAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGATGCCCTCTTCTGGCACACAGGTGTACATGCAGACAGAACA  780

seq1  TTCTTATACATAAAATAAATAAATCTTAAAAAAACAAAAAAGAATCTACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACATAAAATAAATAAATCTTAAAAAAACAAAAAAGAATCTACT  830

seq1  TAATCATAACATTTGGGAAGCAGAGACAGGGACTAGAGAGATGCAGGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAACATTTGGGAAGCAGAGACAGGGACTAGAGAGATGCAGGCCA  880

seq1  GTTTAGGTTACACAATGAGATTTTCTAAAGCAACCAACCAAAACCAAAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTTACACAATGAGATTTTCTAAAGCAACCAACCAAAACCAAAAA  930

seq1  CAAGACACCAGAAGCAATCAAGGAGACTGCATCTGGCTACAGCAGCAAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACCAGAAGCAATCAAGGAGACTGCATCTGGCTACAGCAGCAAAC  980

seq1  ACATCTTAAGTTAGGTTTTTACTGCTGTGTAGAGACACCATGACCAAAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAAGTTAGGTTTTTACTGCTGTGTAGAGACACCATGACCAAAAC  1030

seq1  AACTTTTATAAAGGAAAACATTTCATTTGAAGTTCAAATGGCTTACAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATAAAGGAAAACATTTCATTTGAAGTTCAAATGGCTTACAGCT  1080

seq1  TCAGAGGTTGAGTCCACTATCATCATAATGGAAAGCAAGGCAGTGTGCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTTGAGTCCACTATCATCATAATGGAAAGCAAGGCAGTGTGCAG  1130

seq1  GCAGATAGGGTGCTGGAGGAGCTGAGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  GCAGATAGGGTGCTGGAGGAGCTGAGAATTC  1161