BAC Information

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BAC

Clone NameB6Ng01-325H14
Chromosome4 (Build37)
Map Location 8,454,988 - 8,456,087
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478
Downstream geneRab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325H14.bB6Ng01-325H14.g
ACCGA113523GA113524
length1,2591,099
definitionB6Ng01-325H14.b B6Ng01-325H14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggcttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggtttaattctttg
aatagttcttcttgtttccacttggttaatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgtttgtcaagctgctagtatgtgctctctcccgtttct
tcttggaggtactcagaagctatgagtttccctcttagaaatgctttcat
ttgtgtcccaagtttgggtacgttgtgcttcattttcataacttctaaaa
gtctttatttctttctttattccttctgacaagtatcattgagaaagagt
gttgttcagtttccacgtgactgtgccttccattctataatgttggtatt
gcagactaagctctaggcctgtgatctgacaggatcactggacacatttc
aaatctttgcatcgcgtgcagagcgctacttctgggtcacacctactttg
agtgcatca
gaattctaggatcatggacatttgctaccaggtctgtctttgatcttcac
tcatttcttaatttaaaatatctagaagtcatttcttaagaacactaaat
atggtgatatatgcctttgatcccaatatctgtgaggctgagacaggtca
ttgtgagttcaaggccaccctgggcttcataatactagggcagctacagc
aatgcagccagaccctgccccacccccaaaaggaacgaaaaatgaataga
ttatgaaaaagtaaagcataaccctagacaagaaagttttggggttttcc
acatttggggttttgtgcatcaagaatctatgctggtgctatgcccatct
attcctacaacttgggaggcattggtacaaggattgggagttttgggtca
tccccagctcatagtgagtttcaggctaccctgggctacaagacacccca
tcttgtaacaaaacaacaaacaaaataaaatccaaaacagaaatctaaga
ctagttttgctgggaattctgttttaaggaaccattgggtggcatttcat
tcctcggccagggcaatgggatggtgatggctgttggcaaaggtctcagt
tctttgccaggtgactctctccttacaaccaaatgagtgttctcatggca
aggcactagattcttccaaagtgtgcattctgagacagaacaaaataaac
tctcaatattgtcttatgtctagcttcaaaacatgctattaattctgtgt
ccagttgttcccatagatcagccctgggacaatgcaggtggaggcattaa
caccagatgcagaggcacttgagagtcatcttgggttcctaaccattatg
agcccgaagacatagagaagtgacaggtgactccgagctgtccagtgtgg
gcaccgggaaactgaagtcaggtcctctacaagagcagtacatggtttaa
ctgctgagctgtctctccagctcctcactgacaatatttaaataaaaaat
aggaaaaaccctgagaaacttcactcagtttgtctgcctcttcattctac
ttatttttttaatttttttattctgccattgatgggttaatatgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8454988_8456087
seq2: B6Ng01-325H14.g_67_1165 (reverse)

seq1  TCCCACATA-TAACCCATCAATGGCAGAATAAAAAAAATTAAAAAAAATA  49
      ||||||||| |||||||||||||||||||||||||||  | |||||||||
seq2  TCCCACATATTAACCCATCAATGGCAGAATAAAAAAA--TTAAAAAAATA  48

seq1  AGTAGAATGAAGAGGCAGACAAAACTGAGTGAAGTATCTCAGGGTTTTTC  99
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AGTAGAATGAAGAGGCAGAC-AAACTGAGTGAAGTTTCTCAGGGTTTTTC  97

seq1  CTATTTTTATTTAAAATATTGTCAGTGAGGAGCTGGAGAGACAGCTCAGC  149
      ||||||||  || |||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTATTTAAATATTGTCAGTGAGGAGCTGGAGAGACAGCTCAGC  147

seq1  AGTTAAAACCATGTACTGCTCTTGTAGAGGACCTGACTTCAGTTT-CCGG  198
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTT-AAACCATGTACTGCTCTTGTAGAGGACCTGACTTCAGTTTCCCGG  196

seq1  TGCCCACACTGGACAGCTCGGAGTCACCTGTCACTTCTCTATGTCTTCGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACACTGGACAGCTCGGAGTCACCTGTCACTTCTCTATGTCTTCGG  246

seq1  GCTCATAATGGTTAGGAA-CCAAGATGACTCTCAAGTGCCTCTGCATCTG  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTCATAATGGTTAGGAACCCAAGATGACTCTCAAGTGCCTCTGCATCTG  296

seq1  GTGTTAATGCCTCCACCTGCATTGTCCCAGGGCTGATCTATGGGAACAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATGCCTCCACCTGCATTGTCCCAGGGCTGATCTATGGGAACAAC  346

seq1  TGGACACAGAATTAATAGCATGTTTTGAAGCTAGACATAAGACAATATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAGAATTAATAGCATGTTTTGAAGCTAGACATAAGACAATATTG  396

seq1  AGAGTTTATTTTGTTCTGTCTCAGAATGCACACTTTGGAAGAATCTAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTATTTTGTTCTGTCTCAGAATGCACACTTTGGAAGAATCTAGTG  446

seq1  CCTTGCCATGAGAACACTCATTTGGTTGTAAGGAGAGAGTCACCTGGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCATGAGAACACTCATTTGGTTGTAAGGAGAGAGTCACCTGGCAA  496

seq1  AGAACTGAGACCTTTGCCAACAGCCATCACCATCCCATTGCCCTGGCCGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGACCTTTGCCAACAGCCATCACCATCCCATTGCCCTGGCCGA  546

seq1  GGAATGAAATGCCACCCAATGGTTCCTTAAAACAGAATTCCCAGCAAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAATGCCACCCAATGGTTCCTTAAAACAGAATTCCCAGCAAAAC  596

seq1  TAGTCTTAGATTTCTGTTTTGGATTTTATTTTGTTTGTTGTTTTGTTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGATTTCTGTTTTGGATTTTATTTTGTTTGTTGTTTTGTTACA  646

seq1  AGATGGGGTGTCTTGTAGCCCAGGGTAGCCTGAAACTCACTATGAGCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGTGTCTTGTAGCCCAGGGTAGCCTGAAACTCACTATGAGCTGG  696

seq1  GGATGACCCAAAACTCCCAATCCTTGTACCAATGCCTCCCAAGTTGTAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACCCAAAACTCCCAATCCTTGTACCAATGCCTCCCAAGTTGTAGG  746

seq1  AATAGATGGGCATAGCACCAGCATAGATTCTTGATGCACAAAACCCCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGGGCATAGCACCAGCATAGATTCTTGATGCACAAAACCCCAAA  796

seq1  TGTGGAAAACCCCAAAACTTTCTTGTCTAGGGTTATGCTTTACTTTTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAACCCCAAAACTTTCTTGTCTAGGGTTATGCTTTACTTTTTCA  846

seq1  TAATCTATTCATTTTTCGTTCCTTTTGGGGGTGGGGCAGGGTCTGGCTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATTCATTTTTCGTTCCTTTTGGGGGTGGGGCAGGGTCTGGCTGC  896

seq1  ATTGCTGTAGCTGCCCTAGTATTATGAAGCCCAGGGTGGCCTTGAACTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTAGCTGCCCTAGTATTATGAAGCCCAGGGTGGCCTTGAACTCA  946

seq1  CAATGACCTGTCTCAGCCTCACAGATATTGGGATCAAAGGCATATATCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCTGTCTCAGCCTCACAGATATTGGGATCAAAGGCATATATCAC  996

seq1  CATATTTAGTGTTCTTAAGAAATGACTTCTAGATATTTTAAATTAAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAGTGTTCTTAAGAAATGACTTCTAGATATTTTAAATTAAGAAA  1046

seq1  TGAGTGAAGATCAAAGACAGACCTGGTAGCAAATGTCCATGATCCTAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAGATCAAAGACAGACCTGGTAGCAAATGTCCATGATCCTAGAA  1096

seq1  TTC  1100
      |||
seq2  TTC  1099