BAC Information

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BAC

Clone NameB6Ng01-326E20
Chromosome4 (Build37)
Map Location 140,138,335 - 140,301,034
singlet/doubletdoublet
Overlap geneArhgef10l, Rcc2, Padi6
Upstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
Downstream genePadi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326E20.bB6Ng01-326E20.g
ACCGA114144GA114145
length1,011694
definitionB6Ng01-326E20.b B6Ng01-326E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,300,159 - 140,301,034)(140,138,335 - 140,139,026)
sequence
gaattcaagaccaagctggtctatatattgagttcaggctaacaggtcta
cacagtgagatccagagacaattaattaacgtttaattaaaatgagtaaa
tagaaacacgttcctcaggccagtgagatggctcagtggggaaaggcact
tgccatgaaaccaatggtgagccaaggctggtccccaggacctgagtaaa
ggtggggagagagacctgcctctacaaagctgtcctttgactgccacagg
catgcactgggtggcgctggtgtgtcacacatgctacttgcctttgcctc
ccaagtactgggactagaagtgtggccaccatgccctactgtgagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagaccacagtgcacatgtggagatcagaggacagcttgtgagactcact
ttcctccttccaccatgcgtgctctgcacatcgggctcagtggtgaacgt
ctttaacccactgagctacctggccagtcctgacttttctttaacctcat
caagccaaaaattcccttcatccccctccctcagagactgcctaagagtg
ctctgagacagacgtggtaaatgccacagaccaggtgttccacagaccag
gtgttcctaaaccccaggaagggacccagtttctcatactgggaccaaag
caattttacttggcgggaagctgagtagctgggtggctgttcccttccct
ctccaggtcccccaagagagctcctctctgccctcttccagcttcggatt
gattgattgattgattgattgattgattgattgattgattgagacagggg
tcttcctagaagcccctagtctgtctgaaactccttttttagccaaggct
gcccctcagacttgtaaaccatcttcccgcttgagcctcctggggtgcgt
ggaatgccaggtatgcacctctgaaggcggctggggagctagctccttct
ctgagagggcc
gaattctgcccagacatcactaaccattaacctactgccctacatctctg
tccccgcatcttcttgtctgttgtcaccaaagacaacacatcccaggtgc
tgagtcttgctgggaacccaatgagggccccggtctgaacaatacccgga
agaggggatcagtaccctggtgggatttggacacttgggtggagggggga
ggtcagagaaactgggttctctgggaagagtggccaggatagagagaaga
ccaagacaatggcgggtgagcatgaggacagaagaaccttcgcctcctgc
tggtagctactcccaggtgaagcctgcactggcaggtgcaggagctgccg
gccttgttggtgcctgcagagcatgaaggcccaggcagctgagacgtgag
caaaaaaaaaaaaaaaaaaaagaggcaacacaggaccctctctccacctg
cgtcatttcctcacgcaaccctcccctcaaccactcgcatgactcacccc
agagggtgaaatgccacctcatcagaggactcggcacacacaccccatct
tcctcctctgctccctccaccacccgccccggcccctcccccacccctag
agcgcctgttgtgactgaaggacatcatactaccccatttctcacacctt
catctctcgtctggccagagcattggcttttcccagaaagccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140300159_140301034
seq2: B6Ng01-326E20.b_48_924 (reverse)

seq1  CAGACAGACTA-GGGCTTCTAGGAAGA-CCCTGTCTCAATCAATCAATCA  48
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  CAGACAGACTAGGGGCTTCTAGGAAGACCCCTGTCTCAATCAATCAATCA  50

seq1  ATCAATCAATCAATCAATCAATCAATCAATCCGAAGCTGGAAGA-GGCAG  97
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCAATCAATCAATCAATCAATCAATCAATCCGAAGCTGGAAGAGGGCAG  100

seq1  AGAGGAGCTCTCTTGGGGGACCTGGAGAGGGAAGGGAACAGCCACCCAGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTCTCTTGGGGGACCTGGAGAGGGAAGGGAACAGCCACCCAGC  150

seq1  TACTCAGCTTCCCGCCAAGTAAAATTGCTTTGGTCCCAGTATGAGAAACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCTTCCCGCCAAGTAAAATTGCTTTGGTCCCAGTATGAGAAACT  200

seq1  GGGTCCCTTCCTGGGGTTTAGGAACACCTGGTCTGTGGAACACCTGGTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTTCCTGGGGTTTAGGAACACCTGGTCTGTGGAACACCTGGTCT  250

seq1  GTGGCATTTACCACGTCTGTCTCAGAGCACTCTTAGGCAGTCTCTGAGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTTACCACGTCTGTCTCAGAGCACTCTTAGGCAGTCTCTGAGGG  300

seq1  AGGGGGATGAAGGGAATTTTTGGCTTGATGAGGTTAAAGAAAAGTCAGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGATGAAGGGAATTTTTGGCTTGATGAGGTTAAAGAAAAGTCAGGA  350

seq1  CTGGCCAGGTAGCTCAGTGGGTTAAAGACGTTCACCACTGAGCCCGATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGGTAGCTCAGTGGGTTAAAGACGTTCACCACTGAGCCCGATGT  400

seq1  GCAGAGCACGCATGGTGGAAGGAGGAAAGTGAGTCTCACAAGCTGTCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACGCATGGTGGAAGGAGGAAAGTGAGTCTCACAAGCTGTCCTC  450

seq1  TGATCTCCACATGTGCACTGTGGTCTCTCTCTCTCTCTCTCTCTCTCTCT  497
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TGATCTCCACATGTGCACTGTGG--TCTCTCTCTCTCTCTCTCTCTCTCT  498

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTAGGGCATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTAGGGCATG  548

seq1  GTGGCCACACTTCTAGTCCCAGTACTTGGGAGGCAAAGGCAAGTAGCATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACACTTCTAGTCCCAGTACTTGGGAGGCAAAGGCAAGTAGCATG  598

seq1  TGTGACACACCAGCGCCACCCAGTGCATGCCTGTGGCAGTCAAAGGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACACCAGCGCCACCCAGTGCATGCCTGTGGCAGTCAAAGGACAG  648

seq1  CTTTGTAGAGGCAGGTCTCTCTCCCCACCTTTACTCAGGTCCTGGGGACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAGGCAGGTCTCTCTCCCCACCTTTACTCAGGTCCTGGGGACC  698

seq1  AGCCTTGGCTCACCATTGGTTTCATGGCAAGTGCCTTTCCCCACTGAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTCACCATTGGTTTCATGGCAAGTGCCTTTCCCCACTGAGCC  748

seq1  ATCTCACTGGCCTGAGGAACGTGTTTCTATTTACTCATTTTAATTAAACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTGGCCTGAGGAACGTGTTTCTATTTACTCATTTTAATTAAACG  798

seq1  TTAATTAATTGTCTCTGGATCTCACTGTGTAGACCTGTTAGCCTGAACTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTGTCTCTGGATCTCACTGTGTAGACCTGTTAGCCTGAACTC  848

seq1  AATATATAGACCAGCTTGGTCTTGAATTC  876
      |||||||||||||||||||||||||||||
seq2  AATATATAGACCAGCTTGGTCTTGAATTC  877

seq1: chr4_140138335_140139026
seq2: B6Ng01-326E20.g_68_761

seq1  GAATTCTGCCCAGACATCACTAACCATTAACCTACTGCCCTACATCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCAGACATCACTAACCATTAACCTACTGCCCTACATCTCTG  50

seq1  TCCCCGCATCTTCTTGTCTGTTGTCACCAAAGACAACACATCCCAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCATCTTCTTGTCTGTTGTCACCAAAGACAACACATCCCAGGTGC  100

seq1  TGAGTCTTGCTGGGAACCCAATGAGGGCCCCGGTCTGAACAATACCCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTGCTGGGAACCCAATGAGGGCCCCGGTCTGAACAATACCCGGA  150

seq1  AGAGGGGATCAGTACCCTGGTGGGATTTGGACACTTGGGTGGAGGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATCAGTACCCTGGTGGGATTTGGACACTTGGGTGGAGGGGGGA  200

seq1  GGTCAGAGAAACTGGGTTCTCTGGGAAGAGTGGCCAGGATAGAGAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGAAACTGGGTTCTCTGGGAAGAGTGGCCAGGATAGAGAGAAGA  250

seq1  CCAAGACAATGGCGGGTGAGCATGAGGACAGAAGAACCTTCGCCTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAATGGCGGGTGAGCATGAGGACAGAAGAACCTTCGCCTCCTGC  300

seq1  TGGTAGCTACTCCCAGGTGAAGCCTGCACTGGCAGGTGCAGGAGCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTACTCCCAGGTGAAGCCTGCACTGGCAGGTGCAGGAGCTGCCG  350

seq1  GCCTTGTTGGTGCCTGCAGAGCATGAAGGCCCAGGCAGCTGAGACGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGTGCCTGCAGAGCATGAAGGCCCAGGCAGCTGAGACGTGAG  400

seq1  CAAAAAAAAAAAAAAAAAAAAGAGGCAACACAGGACCCTCTCTCCACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAGAGGCAACACAGGACCCTCTCTCCACCTG  450

seq1  CGTCATTTCCTCACGCAACCCTCCCCTCAACCACTCGCATGACTCACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTTCCTCACGCAACCCTCCCCTCAACCACTCGCATGACTCACCCC  500

seq1  AGAGGGTGAAATGCCACCTCATCAGAGGACTCGGCACACACACCCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGAAATGCCACCTCATCAGAGGACTCGGCACACACACCCCATCT  550

seq1  TCCTCCTCTGCTCCCTCCACCACCCGCCCCGGCCCCTCCCCCACCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGCTCCCTCCACCACCCGCCCCGGCCCCTCCCCCACCCCTAG  600

seq1  AGCGCCTGTTGTGACTGAAGGACATCATACTACCCCATTTCTCACACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTGTTGTGACTGAAGGACATCATACTACCCCATTTCTCACACCTT  650

seq1  CATCTCTCGTCTGGCCAGAGCATTGGCTTTT-CCAG-AAGCCAG  692
      ||||||||||||||||||||||||||||||| |||| |||||||
seq2  CATCTCTCGTCTGGCCAGAGCATTGGCTTTTCCCAGAAAGCCAG  694