BAC Information

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BAC

Clone NameB6Ng01-331C12
Chromosome4 (Build37)
Map Location 146,722,139 - 146,857,426
singlet/doubletdoublet
Overlap geneEG666588, LOC627701
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C12.bB6Ng01-331C12.g
ACCGA117605GA117606
length1,109251
definitionB6Ng01-331C12.b B6Ng01-331C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,856,315 - 146,857,426)(146,722,139 - 146,722,389)
sequence
gaattcaaaaagatctttaaggctttaccaaagagaatctccatgtacaa
actacagatactgcataggatctacaatgctgttttagaagaatgttctg
gaatccataaaatttattaaaacattatagtgaaccccagttcatagttt
tatgcccagatattgaaaccacaaagaccaccagggctcaactctgaacc
atttcacaccagtgtatattccagcttagtatgcaaaccgtccctgatgc
agcatgttaggtgactgaacaggaattttatttcttcaggggaaagaagg
cagaaaaaaaaaatatgtagtagtgctagtaactcccagtagctgcagct
ggctggacatgtctaaccttgagacccgtttttttttttttttgtctaaa
attacatctacgggcttccattttcatacctcaataggatctcaaacttc
ctgacaattataagatattcacaacacaatagtgagagtggctgcagaaa
atcacccctgctccacacacctgctttactcccgccagttcctcttacat
ggcaggttccaggacagacttatctctagtgactctcccagaatgcccac
agagcaactgtagcctaaggaagtttttgagtttccctaatagttggctt
tagtgtcaccccaagacttcctgaccacgaggacatccagaatatgcaca
gaaactgaagtggtggaatttcctgtcactatggcctagttccttggggc
aattccttctggatccacccagtatacagcagcttcctgttacatgtttc
tttgaacccataggacccttttaatgaatttacttcccagtacctctcag
ctgtgtttgtttgtttggttggttgggttggttttcccttgtttgcttac
ttcgttgcttgttttttgtatttcctaaatgcacccaataaggcaagtag
gctctccctcccctcaggtaccaactcaaccaactctgttgcagggtgcc
ttccaacacaactgcagctgtcagatgccagggctacactaacacagctt
ccccacatgtgctgcattgtgcaccagaactggacacagtagacactgca
ccttgggtt
tgggattaaaggcaaatactgccacaccagaactaaaacattagaaaaag
caggaggtcagaagaaacatgagccctggagtaggaatggatggggtagt
ggcagcattctgctcagcctggtggaactgcatggagtagggtgtgcagg
gaagggtgccagctcttttccttctttttctttctgcagaggtggtttgg
tacccggggtttcatggatggtaggcagtgctgggagtgagtgatgaggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146856315_146857426
seq2: B6Ng01-331C12.b_48_1156 (reverse)

seq1  AACCC-AGGTGCAGTGTCCTACTGTGTCCAGTTCTGGTGCACAATGGCAG  49
      ||||| ||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AACCCAAGGTGCAGTGT-CTACTGTGTCCAGTTCTGGTGCACAAT-GCAG  48

seq1  CAACCATGTGGGGAAGCTGTG-TAGTGTAGGCCCTGGGCATCCTGACAGC  98
      ||  ||||||||||||||||| ||||||| ||||| ||||| ||||||||
seq2  CA--CATGTGGGGAAGCTGTGTTAGTGTA-GCCCT-GGCAT-CTGACAGC  93

seq1  TGCAGTTGTG-TGGAAGGCACCCTGCAACAGAGTTGGTTGAG-TGGTACC  146
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TGCAGTTGTGTTGGAAGGCACCCTGCAACAGAGTTGGTTGAGTTGGTACC  143

seq1  TGAGGGGAGGGAGAGCCTACTTGCCTTATTGGGTGCATTTAGGAAAATAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TGAGGGGAGGGAGAGCCTACTTGCCTTATTGGGTGCATTTAGGAAA--TA  191

seq1  CAAAAAACAAGCAACGAAGTAAGCAAACAA-GGAAAACCAA-CCAACCAA  244
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CAAAAAACAAGCAACGAAGTAAGCAAACAAGGGAAAACCAACCCAACCAA  241

seq1  CCAAACAAACAAACACAGCTGAGAGGTACTGGGAAGTAAATTCATTAAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAACAAACACAGCTGAGAGGTACTGGGAAGTAAATTCATTAAAA  291

seq1  GGGTCCTATGGGTTCAAAGAAACATGTAACAGGAAGCTGCTGTATACTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTATGGGTTCAAAGAAACATGTAACAGGAAGCTGCTGTATACTGG  341

seq1  GTGGATCCAGAAGGAATTGCCCCAAGGAACTAGGCCATAGTGACAGGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCCAGAAGGAATTGCCCCAAGGAACTAGGCCATAGTGACAGGAAA  391

seq1  TTCCACCACTTCAGTTTCTGTGCATATTCTGGATGTCCTCGTGGTCAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACTTCAGTTTCTGTGCATATTCTGGATGTCCTCGTGGTCAGGA  441

seq1  AGTCTTGGGGTGACACTAAAGCCAACTATTAGGGAAACTCAAAAACTTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGGTGACACTAAAGCCAACTATTAGGGAAACTCAAAAACTTCC  491

seq1  TTAGGCTACAGTTGCTCTGTGGGCATTCTGGGAGAGTCACTAGAGATAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTACAGTTGCTCTGTGGGCATTCTGGGAGAGTCACTAGAGATAAG  541

seq1  TCTGTCCTGGAACCTGCCATGTAAGAGGAACTGGCGGGAGTAAAGCAGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTGGAACCTGCCATGTAAGAGGAACTGGCGGGAGTAAAGCAGGT  591

seq1  GTGTGGAGCAGGGGTGATTTTCTGCAGCCACTCTCACTATTGTGTTGTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGCAGGGGTGATTTTCTGCAGCCACTCTCACTATTGTGTTGTGA  641

seq1  ATATCTTATAATTGTCAGGAAGTTTGAGATCCTATTGAGGTATGAAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATAATTGTCAGGAAGTTTGAGATCCTATTGAGGTATGAAAATG  691

seq1  GAAGCCCGTAGATGTAATTTTAGACAAAAAAAAAAAAAAACGGGTCTCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCGTAGATGTAATTTTAGACAAAAAAAAAAAAAAACGGGTCTCAA  741

seq1  GGTTAGACATGTCCAGCCAGCTGCAGCTACTGGGAGTTACTAGCACTACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGACATGTCCAGCCAGCTGCAGCTACTGGGAGTTACTAGCACTACT  791

seq1  ACATATTTTTTTTTTCTGCCTTCTTTCCCCTGAAGAAATAAAATTCCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTTTTTTTCTGCCTTCTTTCCCCTGAAGAAATAAAATTCCTGT  841

seq1  TCAGTCACCTAACATGCTGCATCAGGGACGGTTTGCATACTAAGCTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCTAACATGCTGCATCAGGGACGGTTTGCATACTAAGCTGGAA  891

seq1  TATACACTGGTGTGAAATGGTTCAGAGTTGAGCCCTGGTGGTCTTTGTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTGGTGTGAAATGGTTCAGAGTTGAGCCCTGGTGGTCTTTGTGG  941

seq1  TTTCAATATCTGGGCATAAAACTATGAACTGGGGTTCACTATAATGTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATCTGGGCATAAAACTATGAACTGGGGTTCACTATAATGTTTT  991

seq1  AATAAATTTTATGGATTCCAGAACATTCTTCTAAAACAGCATTGTAGATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTTATGGATTCCAGAACATTCTTCTAAAACAGCATTGTAGATC  1041

seq1  CTATGCAGTATCTGTAGTTTGTACATGGAGATTCTCTTTGGTAAAGCCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGTATCTGTAGTTTGTACATGGAGATTCTCTTTGGTAAAGCCTT  1091

seq1  AAAGATCTTTTTGAATTC  1112
      ||||||||||||||||||
seq2  AAAGATCTTTTTGAATTC  1109

seq1: chr4_146722139_146722389
seq2: B6Ng01-331C12.g_73_323

seq1  TGGGATTAAAGGCAAATACTGCCACACCAGAACTAAAACATTAGAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCAAATACTGCCACACCAGAACTAAAACATTAGAAAAAG  50

seq1  CAGGAGGTCAGAAGAAACATGAGCCCTGGAGTAGGAATGGATGGGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTCAGAAGAAACATGAGCCCTGGAGTAGGAATGGATGGGGTAGT  100

seq1  GGCAGCATTCTGCTCAGCCTGGTGGAACTGCATGGAGTAGGGTGTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTCTGCTCAGCCTGGTGGAACTGCATGGAGTAGGGTGTGCAGG  150

seq1  GAAGGGTGCCAGCTCTTTTCCTTCTTTTTCTTTCTGCAGAGGTGGTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGCCAGCTCTTTTCCTTCTTTTTCTTTCTGCAGAGGTGGTTTGG  200

seq1  TACCCGGGGTTTCATGGATGGTAGGCAGTGCTGGGAGTGAGTGATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGGGGTTTCATGGATGGTAGGCAGTGCTGGGAGTGAGTGATGAGGT  250

seq1  G  251
      |
seq2  G  251