BAC Information

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BAC

Clone NameB6Ng01-332N13
Chromosome4 (Build37)
Map Location 154,619,438 - 154,763,845
singlet/doubletdoublet
Overlap gene2610002J02Rik, Prkcz, Gabrd
Upstream geneMegf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski
Downstream gene2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332N13.bB6Ng01-332N13.g
ACCGA118830GA118831
length1,1381,080
definitionB6Ng01-332N13.b B6Ng01-332N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,619,438 - 154,620,587)(154,762,761 - 154,763,845)
sequence
gaattcagtcccattgtcacagggaatacggtggacagaggctgaggaat
gactcttgcgatcgacctctgccttgacaagtatatacacatatatggaa
acacacacataaacacatacacaagcatgctcacactaattgagccaaat
acctttcagatctttttgttttgttacttctataacatacagttcttcca
ggtgagcaaacacaagacagtacacacctcccccacccagcgttttggtt
tcttctggaaagtgcttttaagcccagaaaagttgctcctgtccttgtag
ccctggatctcaggagcctgcactgtgtagcccacctgcttgattttcca
gtgcaagcagaattcagagtgtgtgttacgtcctgcctcgtgaaagactc
ggagcggtacagactgtgtggtgggggtgaagctcactagagaagcatgc
cttgagttctatccccaggggtaagaggacaaaacaaaacaaaagttaaa
atgtagccgggacacagcctgaaacagatggctctggtaaacactaccca
caatttgtttacctcagatgctttttaaacctgtatccacctggctgagg
ggcccagaaggttaagagacctctggcatctgggtcaagggccttcccat
gtgcaggtttcctgtaaatgctgttggatccgggtcaaagctgactctgt
ggaagctgagaaaccacagcctccctggggagtcccctggggctcccact
caccccataacaccaggaaagtttggtttctgcttgacttattgtctcca
caggaggggccccaagttttccccctttctgccaccctgctctctatggc
tctgtccctctttctgctatgtctgtgaccgtgtggtccctctgaagctc
tgggcacagctagggcacagtacacagaactgccctctggaagttgccct
atggttgcgcttcagaaaacctagagggcattggggggcagggctggaag
ctcgacttacggctgtagagctaacctcctagaagaaaggtcacaaggca
ggcacagccctggattgatgaacatgactgggcatgaaagggtttggaaa
gaggctgagagttttgttgaatgttagaatgtcactgt
gaattcttgcttctctactggctagaagctccaactggattcccaagtgt
gtgagttcctctcccttctcatgtccccacgatttcccctgccttcccgt
tctacctggtaggcctactgggaacaacagggccagcacaggttcccagc
tgctcctgggtcaggctaaccccagatgtgcatggctacttgaggggctg
ggctgggagggtggggcaggctggggccctcccgagaagacagagctcga
gtctctgggcatctctcacttctttcttctcagccatatccaggggatct
tggctgacaggaaggctatgtggtcttgtcagggttctctgctttggaga
aaagccccggggattgggactccagttgccaagcctttaattcccttcca
taaatacatagggggaggggactaaggagacacctcaagggagtctggga
gctctgcctctattctggggtggacacagggcaacattcctcaggagcag
acacgaaggtgtctgaaactgggcagaaaggtagcagaagtgtggagagc
ctcttcattttcctgtgtcttgcctgaagggtccagaggggccggcgcct
gctcctccttggcacctgtgctgagggcaatgctccacccgcaggccctg
atgctctgcctgctgtgaccaattggccttgtgttcccagggcaatgaat
gacattggggactacgtgggctccaacctggaaatatcctggctccccaa
cctggatggcttaatggagggctatgcccgaaacttccgaccaggcattg
gaggtacaggcagatgatggtgtgggagcagaaacagatccaaccctgga
tctgctgtgggtgtgggctcttctgggctccggtttggcaactccagggt
tcactggatttcaagccccaggcatcccagatgaaagagtatctctccag
cactgaagctaatatgtaacggcttcagttccctgaaaagccgttgaata
ttattctgtcccacctgtctgggctgcctagaaggcagctggtgctggaa
ctagggtttcttactacgaacacattagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154619438_154620587
seq2: B6Ng01-332N13.b_49_1186

seq1  GAATTCAGTCCCATTGTCACAGGGAATACGGTGGACAGAGGCTGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCATTGTCACAGGGAATACGGTGGACAGAGGCTGAGGAAT  50

seq1  GACTCTTGCGATCGACCTCTGCCTTGACAAGTATATACACATATATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGCGATCGACCTCTGCCTTGACAAGTATATACACATATATGGAA  100

seq1  ACACACACATAAACACATACACAAGCATGCTCACACTAATTGAGCCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATAAACACATACACAAGCATGCTCACACTAATTGAGCCAAAT  150

seq1  ACCTTTCAGATCTTTTTGTTTTGTTACTTCTATAACATACAGTTCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCAGATCTTTTTGTTTTGTTACTTCTATAACATACAGTTCTTCCA  200

seq1  GGTGAGCAAACACAAGACAGTACACACCTCCCCCACCCAGCGTTTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAAACACAAGACAGTACACACCTCCCCCACCCAGCGTTTTGGTT  250

seq1  TCTTCTGGAAAGTGCTTTTAAGCCCAGAAAAGTTGCTCCTGTCCTTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAAAGTGCTTTTAAGCCCAGAAAAGTTGCTCCTGTCCTTGTAG  300

seq1  CCCTGGATCTCAGGAGCCTGCACTGTGTAGCCCACCTGCTTGATTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATCTCAGGAGCCTGCACTGTGTAGCCCACCTGCTTGATTTTCCA  350

seq1  GTGCAAGCAGAATTCAGAGTGTGTGTTACGTCCTGCCTCGTGAAAGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCAGAATTCAGAGTGTGTGTTACGTCCTGCCTCGTGAAAGACTC  400

seq1  GGAGCGGTACAGACTGTGTGGTGGGGGTGAAGCTCACTAGAGAAGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGTACAGACTGTGTGGTGGGGGTGAAGCTCACTAGAGAAGCATGC  450

seq1  CTTGAGTTCTATCCCCAGGGGTAAGAGGACAAAACAAAACAAAAGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCTATCCCCAGGGGTAAGAGGACAAAACAAAACAAAAGTTAAA  500

seq1  ATGTAGCCGGGACACAGCCTGAAACAGATGGCTCTGGTAAACACTACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCGGGACACAGCCTGAAACAGATGGCTCTGGTAAACACTACCCA  550

seq1  CAATTTGTTTACCTCAGATGCTTTTTAAACCTGTATCCACCTGGCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTTTACCTCAGATGCTTTTTAAACCTGTATCCACCTGGCTGAGG  600

seq1  GGCCCAGAAGGTTAAGAGACCTCTGGCATCTGGGTCAAGGGCCTTCCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAAGGTTAAGAGACCTCTGGCATCTGGGTCAAGGGCCTTCCCAT  650

seq1  GTGCAGGTTTCCTGTAAATGCTGTTGGATCCGGGTCAAAGCTGACTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTTTCCTGTAAATGCTGTTGGATCCGGGTCAAAGCTGACTCTGT  700

seq1  GGAAGCTGAGAAACCACAGCCTCCCTGGGGAGTCCCCTGGGGCTCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGAGAAACCACAGCCTCCCTGGGGAGTCCCCTGGGGCTCCCACT  750

seq1  CACCCCATAACACCAGGAAAGTTTGGTTTCTGCTTGACTTATTGTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATAACACCAGGAAAGTTTGGTTTCTGCTTGACTTATTGTCTCCA  800

seq1  CAGGAGGGGCCCCAAGTTTTCCCCCTTTCTGCCACCCTGCTCTCTATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGGCCCCAAGTTTTCCCCCTTTCTGCCACCCTGCTCTCTATGGC  850

seq1  TCTGTCCCTCTTTCTGCTATGTCTGTGACCGTGTGGTCCCTCTGAAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTCTTTCTGCTATGTCTGTGACCGTGTGGTCCCTCTGAAGCTC  900

seq1  TGGGCACAGCTAGGGCACAGTACACAGAACTGCCCTCTGGAAGTTGCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGCTAGGGCACAGTACACAGAACTGCCCTCTGGAAGTTGCCCT  950

seq1  ATGGTTGCGCTTCAGGAAAACCTAGAAGGGCATTGGGGGGCAGGGCTGGA  1000
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  ATGGTTGCGCTTCA-GAAAACCTAG-AGGGCATTGGGGGGCAGGGCTGGA  998

seq1  AGGCTCGGACTTAGGGCTGTAGGAGCTAACCTCCTAG-AGAAAGGGCCAA  1049
      | |||| |||||| ||||||| ||||||||||||||| ||||||| |  |
seq2  A-GCTC-GACTTACGGCTGTA-GAGCTAACCTCCTAGAAGAAAGGTC--A  1043

seq1  CAAAGGCAGGCACAGGCCCTGGATTGATGAACATGAACTGGGCCATGAGA  1099
      | |||||||||||| |||||||||||||||||||| |||||| ||||| |
seq2  C-AAGGCAGGCACA-GCCCTGGATTGATGAACATG-ACTGGG-CATGAAA  1089

seq1  GGGTTTGGAAAAGAGGCTGGAAGAG-TTTGTTGAATGTCAGAATGTCACT  1148
      |||||||| ||||||||||  |||| |||||||||||| |||||||||||
seq2  GGGTTTGG-AAAGAGGCTG--AGAGTTTTGTTGAATGTTAGAATGTCACT  1136

seq1  GT  1150
      ||
seq2  GT  1138

seq1: chr4_154762761_154763845
seq2: B6Ng01-332N13.g_69_1148 (reverse)

seq1  TGCTAATGTTGTCGTAGT-AGAAACCCCAG-TCCAGCACCCAGCTACCCT  48
      |||||||||  ||||||| |||||||| || ||||||| ||||||  |||
seq2  TGCTAATGTGTTCGTAGTAAGAAACCCTAGTTCCAGCA-CCAGCT-GCCT  48

seq1  TCTAGGCCAGCCCAGACAGGTGGGACAGAATAATATCCACGGCCTTTTCA  98
      |||||| ||||||||||||||||||||||||||||| ||  | |||||||
seq2  TCTAGG-CAGCCCAGACAGGTGGGACAGAATAATATTCAACGGCTTTTCA  97

seq1  GGGAACTTGGAGCCGTTACATATTTGCCTCAGTGCCTGGGGAGATACCTC  148
      |||||| || |||||||||||||| || |||||| |||| |||||| |||
seq2  GGGAAC-TGAAGCCGTTACATATTAGCTTCAGTG-CTGGAGAGATA-CTC  144

seq1  TTTCATCTGGGATGCCTGGGGCTTGAAATCCAGTGAACCCCTGGAGTTGC  198
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATCTGGGATGCCTGGGGCTTGAAATCCAGTGAA-CCCTGGAGTTGC  193

seq1  CAAACCGGAGCCCAGAAGAGCCCACACCCACAGCAGATCCAGGGTTGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCGGAGCCCAGAAGAGCCCACACCCACAGCAGATCCAGGGTTGGAT  243

seq1  CTGTTTCTGCTCCCACACCATCATCTGCCTGTACCTCCAATGCCTGGTCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGCTCCCACACCATCATCTGCCTGTACCTCCAATGCCTGGTCG  293

seq1  GAAGTTTCGGGCATAGCCCTCCATTAAGCCATCCAGGTTGGGGAGCCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCGGGCATAGCCCTCCATTAAGCCATCCAGGTTGGGGAGCCAGG  343

seq1  ATATTTCCAGGTTGGAGCCCACGTAGTCCCCAATGTCATTCATTGCCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCAGGTTGGAGCCCACGTAGTCCCCAATGTCATTCATTGCCCTG  393

seq1  GGAACACAAGGCCAATTGGTCACAGCAGGCAGAGCATCAGGGCCTGCGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAAGGCCAATTGGTCACAGCAGGCAGAGCATCAGGGCCTGCGGG  443

seq1  TGGAGCATTGCCCTCAGCACAGGTGCCAAGGAGGAGCAGGCGCCGGCCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATTGCCCTCAGCACAGGTGCCAAGGAGGAGCAGGCGCCGGCCCC  493

seq1  TCTGGACCCTTCAGGCAAGACACAGGAAAATGAAGAGGCTCTCCACACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACCCTTCAGGCAAGACACAGGAAAATGAAGAGGCTCTCCACACTT  543

seq1  CTGCTACCTTTCTGCCCAGTTTCAGACACCTTCGTGTCTGCTCCTGAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCTTTCTGCCCAGTTTCAGACACCTTCGTGTCTGCTCCTGAGGA  593

seq1  ATGTTGCCCTGTGTCCACCCCAGAATAGAGGCAGAGCTCCCAGACTCCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCCTGTGTCCACCCCAGAATAGAGGCAGAGCTCCCAGACTCCCT  643

seq1  TGAGGTGTCTCCTTAGTCCCCTCCCCCTATGTATTTATGGAAGGGAATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTCTCCTTAGTCCCCTCCCCCTATGTATTTATGGAAGGGAATTA  693

seq1  AAGGCTTGGCAACTGGAGTCCCAATCCCCGGGGCTTTTCTCCAAAGCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGGCAACTGGAGTCCCAATCCCCGGGGCTTTTCTCCAAAGCAGA  743

seq1  GAACCCTGACAAGACCACATAGCCTTCCTGTCAGCCAAGATCCCCTGGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGACAAGACCACATAGCCTTCCTGTCAGCCAAGATCCCCTGGAT  793

seq1  ATGGCTGAGAAGAAAGAAGTGAGAGATGCCCAGAGACTCGAGCTCTGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGAAGAAAGAAGTGAGAGATGCCCAGAGACTCGAGCTCTGTCT  843

seq1  TCTCGGGAGGGCCCCAGCCTGCCCCACCCTCCCAGCCCAGCCCCTCAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAGGGCCCCAGCCTGCCCCACCCTCCCAGCCCAGCCCCTCAAGT  893

seq1  AGCCATGCACATCTGGGGTTAGCCTGACCCAGGAGCAGCTGGGAACCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCACATCTGGGGTTAGCCTGACCCAGGAGCAGCTGGGAACCTGT  943

seq1  GCTGGCCCTGTTGTTCCCAGTAGGCCTACCAGGTAGAACGGGAAGGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTGTTGTTCCCAGTAGGCCTACCAGGTAGAACGGGAAGGCAGG  993

seq1  GGAAATCGTGGGGACATGAGAAGGGAGAGGAACTCACACACTTGGGAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCGTGGGGACATGAGAAGGGAGAGGAACTCACACACTTGGGAATC  1043

seq1  CAGTTGGAGCTTCTAGCCAGTAGAGAAGCAAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGCTTCTAGCCAGTAGAGAAGCAAGAATTC  1080