BAC Information

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BAC

Clone NameB6Ng01-333F10
Chromosome4 (Build37)
Map Location 19,915,985 - 20,038,640
singlet/doubletdoublet
Overlap geneLOC667282, Ttpa, LOC667301, EG664800
Upstream geneLOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F10.bB6Ng01-333F10.g
ACCGA119178GA119179
length1,2361,057
definitionB6Ng01-333F10.b B6Ng01-333F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,915,985 - 19,917,212)(20,037,578 - 20,038,640)
sequence
gaattcctggccacacagaacaggaagaaacttcagtattctatggaccg
ttgtcagcctattagacccacaaacctatgtttgctgttgtagctgaatg
ctagactcaaacaagtagcttctcaattgaacaaccctttcataggggtt
gcctgagaccatcagaaaacacagatatttacattatgattcacaaaagt
agcaaaattaaagctaggaattacagtagcaaccaaaacagtgttttggt
agggggtcaccacaacatgagaaactatttaagggtcatagtattaggaa
ggatgagaaccactgctctagtgtgttggaaaacacaaaccattttatat
ggagcctaaatccccaaagcacttgctcctactgttttgctatccctctc
atagctcatatctggataatcatggcgatgccctttagctagttaaatgg
agaaaggaatcccatgactgagtttcagagaaagcacattctacatcgac
accagttgggtaggggcaatggttgcctgagagtcctgcttcaggttagt
cctgacagagtgaaggaaaatctcccactgggcagaggttcaggaggcag
atctcagctgcagatctgtctgttccatgctgaaggacatcaggcctgaa
agacatttactcagactttcaggaaatggccagggctgagtcaaataagg
gaactgggagtaacagtcctggaggtttgacaatcaggacagtgggtgaa
aacagaaagctgtagctctggaatgggcagagatggaaggcaatatgtgt
ctacttttcttattggagtagctttagataaaacacaaggagcccacaga
tactttgtcaccagtattatttcccatacacattttcctctgactacaaa
atttgtcctgtggcacaggaagtataacaatgggtctcaccaacagagtc
tgtttgcagctctattttccatccccacagtcacaagtgctgctgactta
gaaaactaggtggtgatgagtaagcttgacaggttcttagaatctctggg
tttgcctttgagggcttaattaaataggttaagttcccaaggcttgtctg
tgaaagattttcctcagttacattcattgaaggttggaaatcccttctgt
gactgcttgatcaaggtaaaacaaaaagacaatggactcaagttcaatca
ctcttctgcttttaggtgtcaccccaagctctctac

gaattctatgtataaacctcaagtgatattttgtattaatacgagtttct
actatcacataacactgtgacgtaatttctttgtatattagtgtcttttt
ctatcatttcttgagctaccaggtgaagtaaatgaaaatacctgaactct
gtcaagaactgcccggtataatattggtagcctgtaggaaaatgagtctt
gtttttcttacacatacaggtaacaggacttgttttcacaattttgcttt
ttacattttgtgcttctacctgtatattatattctacagtcattagaata
tgtcatttaattcatatgtctttctctaaacactgattctgaataagttt
acaagttatatgtaattaactattattttcaaccatgaataaaagtgtac
attgaaatagaaggtgaatgctattttcaatgcttctcctcataataaat
gctcagcatcctgaatccccaagtccaaggttgaaaacttttttagcact
gcatgatgccacagatccagaattccaggtcatgaaactttgactcacat
aaaattggtaaaataagtaatatcttatgcatattataagattactttca
ggggcatagaaatcactggattctgtgtttagtcttagagtgcatcccta
atttcactatgcaaatataaatatttcaaaattcaagacctgtgctcccg
ggcatctcaaagagcaatgcttcccctatcctatgtgtttgtaaaagaaa
cttggacaagtgtgcatcctgagtgttcctgcattcttcagattgcaaga
gtttacacttctgtttcacgagcaaggaaaatcactggctattgtgactg
gaagaaaacagtccactttccaagaagtcccagaagacttgaaggactac
aaaccaactcaaccaatttgccactggttgtggctaagctggcttctcat
ccatgatctatcagtctactctgtcatcaccctaggctaccactcaagca
gaacaaggctataattttgttctccacgggggaaaaaaaagactgctact
aactaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_19915985_19917212
seq2: B6Ng01-333F10.b_48_1283

seq1  GAATTCCTGGCCACACAGAACAGGAAGAAACTTCAGTATTCTATGGACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCCACACAGAACAGGAAGAAACTTCAGTATTCTATGGACCG  50

seq1  TTGTCAGCCTATTAGACCCACAAACCTATGTTTGCTGTTGTAGCTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCCTATTAGACCCACAAACCTATGTTTGCTGTTGTAGCTGAATG  100

seq1  CTAGACTCAAACAAGTAGCTTCTCAATTGAACAACCCTTTCATAGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCAAACAAGTAGCTTCTCAATTGAACAACCCTTTCATAGGGGTT  150

seq1  GCCTGAGACCATCAGAAAACACAGATATTTACATTATGATTCACAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGACCATCAGAAAACACAGATATTTACATTATGATTCACAAAAGT  200

seq1  AGCAAAATTAAAGCTAGGAATTACAGTAGCAACCAAAACAGTGTTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTAAAGCTAGGAATTACAGTAGCAACCAAAACAGTGTTTTGGT  250

seq1  AGGGGGTCACCACAACATGAGAAACTATTTAAGGGTCATAGTATTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCACCACAACATGAGAAACTATTTAAGGGTCATAGTATTAGGAA  300

seq1  GGATGAGAACCACTGCTCTAGTGTGTTGGAAAACACAAACCATTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAACCACTGCTCTAGTGTGTTGGAAAACACAAACCATTTTATAT  350

seq1  GGAGCCTAAATCCCCAAAGCACTTGCTCCTACTGTTTTGCTATCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAAATCCCCAAAGCACTTGCTCCTACTGTTTTGCTATCCCTCTC  400

seq1  ATAGCTCATATCTGGATAATCATGGCGATGCCCTTTAGCTAGTTAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCATATCTGGATAATCATGGCGATGCCCTTTAGCTAGTTAAATGG  450

seq1  AGAAAGGAATCCCATGACTGAGTTTCAGAGAAAGCACATTCTACATCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAATCCCATGACTGAGTTTCAGAGAAAGCACATTCTACATCGAC  500

seq1  ACCAGTTGGGTAGGGGCAATGGTTGCCTGAGAGTCCTGCTTCAGGTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGGGTAGGGGCAATGGTTGCCTGAGAGTCCTGCTTCAGGTTAGT  550

seq1  CCTGACAGAGTGAAGGAAAATCTCCCACTGGGCAGAGGTTCAGGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGAGTGAAGGAAAATCTCCCACTGGGCAGAGGTTCAGGAGGCAG  600

seq1  ATCTCAGCTGCAGATCTGTCTGTTCCATGCTGAAGGACATCAGGCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCTGCAGATCTGTCTGTTCCATGCTGAAGGACATCAGGCCTGAA  650

seq1  AGACATTTACTCAGACTTTCAGGAAATGGCCAGGGCTGAGTCAAATAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTACTCAGACTTTCAGGAAATGGCCAGGGCTGAGTCAAATAAGG  700

seq1  GAACTGGGAGTAACAGTCCTGGAGGTTTGACAATCAGGACAGTGGGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGAGTAACAGTCCTGGAGGTTTGACAATCAGGACAGTGGGTGAA  750

seq1  AACAGAAAGCTGTAGCTCTGGAATGGGCAGAGATGGAAGGCAATATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGCTGTAGCTCTGGAATGGGCAGAGATGGAAGGCAATATGTGT  800

seq1  CTACTTTTCTTATTGGAGTAGCTTTAGATAAAACACAAGGAGCCCACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCTTATTGGAGTAGCTTTAGATAAAACACAAGGAGCCCACAGA  850

seq1  TACTTTGTCACCAGTATTATTTCCCATACACA-TTTCCTCTGACTACAAA  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTTTGTCACCAGTATTATTTCCCATACACATTTTCCTCTGACTACAAA  900

seq1  ATTTGTCCTGTGGCACAGGAAGTATAACAATGGGTCTCACCAACAGAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTGTGGCACAGGAAGTATAACAATGGGTCTCACCAACAGAGTC  950

seq1  TGTTTGCAGCTCTA-TTTCCATCCCCACAGTCACAAGTGCTGCTGACTTA  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGCTCTATTTTCCATCCCCACAGTCACAAGTGCTGCTGACTTA  1000

seq1  G-AAACTAGGT-GTGATGAGTAAGCTTGACAGGTTC-TAGAATCTCTGGG  1045
      | ||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GAAAACTAGGTGGTGATGAGTAAGCTTGACAGGTTCTTAGAATCTCTGGG  1050

seq1  TTTGCCTTTGAGGGCTTATTAAATTAGGTTAGGTTCCCAA-GCCTGTCTG  1094
      |||||||||||||||||| | || ||||||| |||||||| || ||||||
seq2  TTTGCCTTTGAGGGCTTAATTAAATAGGTTAAGTTCCCAAGGCTTGTCTG  1100

seq1  TGAGAGATTTT-CTCAGTTACATTCATTG-AGGTTGGAAATCCC-TCTGT  1141
      ||| ||||||| ||||||||||||||||| |||||||||||||| |||||
seq2  TGAAAGATTTTCCTCAGTTACATTCATTGAAGGTTGGAAATCCCTTCTGT  1150

seq1  GACTGCTGGATCAAGGGAAAAC-AAGAGGCAATTTGAACTCCAGAGGTC-  1189
      ||||||| |||||||| ||||| || || |||  || ||||   || || 
seq2  GACTGCTTGATCAAGGTAAAACAAAAAGACAA--TGGACTC--AAGTTCA  1196

seq1  ATCACTC-TCTGCTTTTTGGTGGTCACCCCAAGCTC-CTAC  1228
      ||||||| ||||||||| ||| |||||||||||||| ||||
seq2  ATCACTCTTCTGCTTTTAGGT-GTCACCCCAAGCTCTCTAC  1236


seq1: chr4_20037578_20038640
seq2: B6Ng01-333F10.g_64_1120 (reverse)

seq1  ATTAGTTA-TA--AGGCTTTTTTTT-CCCCGTGGAGAACAAAATTATAGC  46
      |||||||| ||  || ||||||||| ||||||||||||||||||||||||
seq2  ATTAGTTAGTAGCAGTCTTTTTTTTCCCCCGTGGAGAACAAAATTATAGC  50

seq1  CTGGTTTCTGCTTTGGAAGTGGTAGCCTAGGGTGAATGACAGAGGTAAGA  96
      || | ||||||||    ||||||||||||||||| |||||||| |||   
seq2  CTTG-TTCTGCTT---GAGTGGTAGCCTAGGGTG-ATGACAGA-GTA--G  92

seq1  ACTGAATAGATCATTGGATGAGAAGCCAGCTTAGCCACAACCAGTGGCAA  146
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTG-ATAGATCA-TGGATGAGAAGCCAGCTTAGCCACAACCAGTGGCAA  140

seq1  ATTGGTTGAGTTGGTTTGTAGTCCTTCAAGTCTTCTGGGACTTCTTGGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGAGTTGGTTTGTAGTCCTTCAAGTCTTCTGGGACTTCTTGGAA  190

seq1  AGTGGACTGTTTTCTTCCAGTCACAATAGCCAGTGATTTTCCTTGCTCGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTGTTTTCTTCCAGTCACAATAGCCAGTGATTTTCCTTGCTCGT  240

seq1  GAAACAGAAGTGTAAACTCTTGCAATCTGAAGAATGCAGGAACACTCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAAGTGTAAACTCTTGCAATCTGAAGAATGCAGGAACACTCAGG  290

seq1  ATGCACACTTGTCCAAGTTTCTTTTACAAACACATAGGATAGGGGAAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTTGTCCAAGTTTCTTTTACAAACACATAGGATAGGGGAAGCA  340

seq1  TTGCTCTTTGAGATGCCCGGGAGCACAGGTCTTGAATTTTGAAATATTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTGAGATGCCCGGGAGCACAGGTCTTGAATTTTGAAATATTTA  390

seq1  TATTTGCATAGTGAAATTAGGGATGCACTCTAAGACTAAACACAGAATCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATAGTGAAATTAGGGATGCACTCTAAGACTAAACACAGAATCC  440

seq1  AGTGATTTCTATGCCCCTGAAAGTAATCTTATAATATGCATAAGATATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTCTATGCCCCTGAAAGTAATCTTATAATATGCATAAGATATTA  490

seq1  CTTATTTTACCAATTTTATGTGAGTCAAAGTTTCATGACCTGGAATTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTACCAATTTTATGTGAGTCAAAGTTTCATGACCTGGAATTCTG  540

seq1  GATCTGTGGCATCATGCAGTGCTAAAAAAGTTTTCAACCTTGGACTTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGGCATCATGCAGTGCTAAAAAAGTTTTCAACCTTGGACTTGGG  590

seq1  GATTCAGGATGCTGAGCATTTATTATGAGGAGAAGCATTGAAAATAGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGATGCTGAGCATTTATTATGAGGAGAAGCATTGAAAATAGCAT  640

seq1  TCACCTTCTATTTCAATGTACACTTTTATTCATGGTTGAAAATAATAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTATTTCAATGTACACTTTTATTCATGGTTGAAAATAATAGTT  690

seq1  AATTACATATAACTTGTAAACTTATTCAGAATCAGTGTTTAGAGAAAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATATAACTTGTAAACTTATTCAGAATCAGTGTTTAGAGAAAGAC  740

seq1  ATATGAATTAAATGACATATTCTAATGACTGTAGAATATAATATACAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTAAATGACATATTCTAATGACTGTAGAATATAATATACAGGT  790

seq1  AGAAGCACAAAATGTAAAAAGCAAAATTGTGAAAACAAGTCCTGTTACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACAAAATGTAAAAAGCAAAATTGTGAAAACAAGTCCTGTTACCT  840

seq1  GTATGTGTAAGAAAAACAAGACTCATTTTCCTACAGGCTACCAATATTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTAAGAAAAACAAGACTCATTTTCCTACAGGCTACCAATATTAT  890

seq1  ACCGGGCAGTTCTTGACAGAGTTCAGGTATTTTCATTTACTTCACCTGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGCAGTTCTTGACAGAGTTCAGGTATTTTCATTTACTTCACCTGGT  940

seq1  AGCTCAAGAAATGATAGAAAAAGACACTAATATACAAAGAAATTACGTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGAAATGATAGAAAAAGACACTAATATACAAAGAAATTACGTCA  990

seq1  CAGTGTTATGTGATAGTAGAAACTCGTATTAATACAAAATATCACTTGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTATGTGATAGTAGAAACTCGTATTAATACAAAATATCACTTGAG  1040

seq1  GTTTATACATAGAATTC  1063
      |||||||||||||||||
seq2  GTTTATACATAGAATTC  1057


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