BAC Information

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BAC

Clone NameB6Ng01-334O04
Chromosome4 (Build37)
Map Location 84,561,392 - 84,562,571
singlet/doubletsinglet
Overlap geneD530005L17Rik, LOC622811
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284
Downstream geneLOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334O04.bB6Ng01-334O04.g
ACCGA120279GA120280
length1,1791,206
definitionB6Ng01-334O04.b B6Ng01-334O04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtaatttttttccaacagttgttgtactgcacttgatttgaat
gcagcggacagtgtcttgtttttccgaacaaaagtgatccttactaagtc
gtcccattcctgaaaattgattggtggtggcggattcttaggttctatcc
tgaccacgctggactccaccttggggggcagtctgaagttattcttcccc
accttcattagatggtccacgtgtgctaaaagctgtgtgttgatggagag
tctacagtataatttatctccaggcttggcaaccaatcgaagagcaaact
ctctctgaaacatgagtatagcacatctgaaaaatggccggtggagcagc
aacttgaagacaaagggagaggagatctgataaggcaagtttgccacaca
agcatcaaagaatggcaaatctgatttcagtacatctcccaccaggacct
ggagtttgctggccagaggcgtaccctgaactcttttgtgaagttcagct
actagccttggatcaagttcacaggcaactacctttttggccttttctaa
cagcttgacagtcatattgccagtcccaggcccaacttccagcaccacat
cggtaggtcttaaagcagccttatcgatgatgctgttaacaattagagga
tttttcaaaatgtgttgtccgatccctgtgttgaacatgagtcctccagc
tcgcttcagctccctgcgctactcttgacgatcccgccggcggctactcg
ctgcggacttggccttcggcatcttctcggaggagtccctgtgccaagca
aaagcagccgggaaccgcgtggaagtcgtcctcccagactactttcttat
agaacccagaaccaccagcccaggaacagcaccatccataatgggctaga
acctctccatcattcactaattaagaatgtcctacaggttgcttaaagtt
ccattttatggaagcattttcttaactgagattcttcccttcttggatta
ttttagcttgggtagaaagctgacattaacagcacagtcaccctagatta
tttacacaccatgtaccacacatacatctgatgtgtctcctccttttaac
actgcagcattttgtaggtagcctctaattttgctcatagctgagaatca
ggttcactccttcccagaagtacccattc
gaattctaaacccttgatcttggtcaaggatgcccttggactgtggaaca
ctggtggaaggctttggccatgtcagaattcaattttaaaaagcacttat
agtaggaaaatactgaaagagagcacgtggatccataaactagactaact
cgggaatggaacgcgggagtgaaaaattactatatgggtagggaatgcta
gattccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctctcggcttgtccagttgactcgaccagagagcgtagcaggag
tctaccttcttgagttctttatatatattggatattagtcccctatctga
tttaggattggtaaagatcctttcccaatctgttggtggcctttttgtct
tgacggtgtcttttcccttgaagaagatttgcaattttatgaggtcccat
ttgtcgattctcgaacttacagcacaagccatttctattctattcaggaa
tttttcccctgtacccatatctttgaggcttttccctactttctcctcta
taagtttcagtgtctctggttttatatggagttccttaatccacttagat
ttgaccttagtacaaggagataggaatggatcaatttgcattcttctaca
tgataaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttt
tccactggatggtttttgctcccttgtcaaagatcaagtgaccataggtg
tgtgggttcatctctgggtcttcaattctgttccattggtctacttgtct
gtcactataccagtaccatgcagtttttatcacaattgctctgtagtaca
gctttaggtcagcatggtgattccaccagaggttcttttatccttgagaa
gagttttgctatcctaggtttttgtgttccagatgaatttgcagattgcc
ctttctaattccttgaagaattgagtgaatttgatggggattgcattgaa
tctgtagatgcttttgcagatacccattttcactatattgatcctgtcga
tcatgagcatgggagatctttcatcttctgagaatctctttattcttctt
cgagaactgaggttctttactcgattctttcactccttagtagtcacgtc
aaggaattaatatttggacctatgggagcgttgtgttcctcataggtctt
tctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84561392_84562571
seq2: B6Ng01-334O04.b_46_1224 (reverse)

seq1  GAATGGGTACTTCTGGGAAGGGATGAACTTGA-TCTCAGCTTATGAGCAA  49
      |||||||||||||||||||||  ||||| ||| ||||||| |||||||||
seq2  GAATGGGTACTTCTGGGAAGGAGTGAACCTGATTCTCAGC-TATGAGCAA  49

seq1  AA-TAGAGGCTACCTACAAAATGGCTGCAGTTGTTAAAAGGAGGAGACCA  98
      || ||||||||||||||||||| ||||||| |||||||||||||||| ||
seq2  AATTAGAGGCTACCTACAAAAT-GCTGCAG-TGTTAAAAGGAGGAGA-CA  96

seq1  CATCAGATGTATGTGT-GTACAT-GTGTGTAAATAATCCTAGGTGACTGT  146
      |||||||||||||||| |||||| ||||||||||||||   |||||||||
seq2  CATCAGATGTATGTGTGGTACATGGTGTGTAAATAATCTAGGGTGACTGT  146

seq1  GCTGTTTAATGTCAGCTTTCTACCCAAGCTAAAATAATCCAAG-AGGGAA  195
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTG-TTAATGTCAGCTTTCTACCCAAGCTAAAATAATCCAAGAAGGGAA  195

seq1  GAATCTCAGTTAAGAAAATGCTTCCATAAAATGGAACTTTAAGCAACCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAGTTAAGAAAATGCTTCCATAAAATGGAACTTTAAGCAACCTG  245

seq1  TAGGACATTTCTTAATTAGTGAATGATGGAGAGGTTCTAGCCCATTATGG  295
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACA-TTCTTAATTAGTGAATGATGGAGAGGTTCTAGCCCATTATGG  294

seq1  ATGGTGCTGTTCCTGGGCTGGTGGTTCTGGGTTCTATAAGAAAGTAGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTGTTCCTGGGCTGGTGGTTCTGGGTTCTATAAGAAAGTAGTCT  344

seq1  GGGAGGACGACTTCCACGCGGTTCCCGGCTGCTTTTGCTTGGCACAGGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACGACTTCCACGCGGTTCCCGGCTGCTTTTGCTTGGCACAGGGA  394

seq1  CTCCTCCGAGAAGATGCCGAAGGCCAAGTCCGCAGCGAGTAGCCGCCGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCGAGAAGATGCCGAAGGCCAAGTCCGCAGCGAGTAGCCGCCGGC  444

seq1  GGGATCGTCAAGAGTAGCGCAGGGAGCTGAAGCGAGCTGGAGGACTCATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGTCAAGAGTAGCGCAGGGAGCTGAAGCGAGCTGGAGGACTCATG  494

seq1  TTCAACACAGGGATCGGACAACACATTTTGAAAAATCCTCTAATTGTTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACAGGGATCGGACAACACATTTTGAAAAATCCTCTAATTGTTAA  544

seq1  CAGCATCATCGATAAGGCTGCTTTAAGACCTACCGATGTGGTGCTGGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCATCGATAAGGCTGCTTTAAGACCTACCGATGTGGTGCTGGAAG  594

seq1  TTGGGCCTGGGACTGGCAATATGACTGTCAAGCTGTTAGAAAAGGCCAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTGGGACTGGCAATATGACTGTCAAGCTGTTAGAAAAGGCCAAA  644

seq1  AAGGTAGTTGCCTGTGAACTTGATCCAAGGCTAGTAGCTGAACTTCACAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTGCCTGTGAACTTGATCCAAGGCTAGTAGCTGAACTTCACAA  694

seq1  AAGAGTTCAGGGTACGCCTCTGGCCAGCAAACTCCAGGTCCTGGTGGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCAGGGTACGCCTCTGGCCAGCAAACTCCAGGTCCTGGTGGGAG  744

seq1  ATGTACTGAAATCAGATTTGCCATTCTTTGATGCTTGTGTGGCAAACTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGAAATCAGATTTGCCATTCTTTGATGCTTGTGTGGCAAACTTG  794

seq1  CCTTATCAGATCTCCTCTCCCTTTGTCTTCAAGTTGCTGCTCCACCGGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCAGATCTCCTCTCCCTTTGTCTTCAAGTTGCTGCTCCACCGGCC  844

seq1  ATTTTTCAGATGTGCTATACTCATGTTTCAGAGAGAGTTTGCTCTTCGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGATGTGCTATACTCATGTTTCAGAGAGAGTTTGCTCTTCGAT  894

seq1  TGGTTGCCAAGCCTGGAGATAAATTATACTGTAGACTCTCCATCAACACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCAAGCCTGGAGATAAATTATACTGTAGACTCTCCATCAACACA  944

seq1  CAGCTTTTAGCACACGTGGACCATCTAATGAAGGTGGGGAAGAATAACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTAGCACACGTGGACCATCTAATGAAGGTGGGGAAGAATAACTT  994

seq1  CAGACTGCCCCCCAAGGTGGAGTCCAGCGTGGTCAGGATAGAACCTAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCCCCCCAAGGTGGAGTCCAGCGTGGTCAGGATAGAACCTAAGA  1044

seq1  ATCCGCCACCACCAATCAATTTTCAGGAATGGGACGACTTAGTAAGGATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCCACCACCAATCAATTTTCAGGAATGGGACGACTTAGTAAGGATC  1094

seq1  ACTTTTGTTCGGAAAAACAAGACACTGTCCGCTGCATTCAAATCAAGTGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTCGGAAAAACAAGACACTGTCCGCTGCATTCAAATCAAGTGC  1144

seq1  AGTACAACAACTGTTGGAAAAAAATTACAGAATTC  1180
      |||||||||||||||||||||||||||||||||||
seq2  AGTACAACAACTGTTGGAAAAAAATTACAGAATTC  1179