BAC Information

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BAC

Clone NameB6Ng01-334P06
Chromosome4 (Build37)
Map Location 146,632,017 - 146,633,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334P06.bB6Ng01-334P06.g
ACCGA120329GA120330
length1,2181,009
definitionB6Ng01-334P06.b B6Ng01-334P06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgggtactgctggcttctacagactctagatacctgggttggg
gaccttagctgcccagttgtaccccctaaccaaagaaggggaggtgtttg
tgtggaccccagatcaccagaaagtctttaaagagattaaaaaggcccta
ctgatggccagcctatgcctgacctaaccaagcctttcactctttatgtg
aaagagagagcaggggtcaccagaggagtccttactcagactttgagact
ttaaaaaaggccagtgacttacctatccaagaagttacaccctgttgcca
gcgggtggttttcttgcctaaaagctattgctgccataatctgcttgtca
aggatgctgataagctcactctgggacagcaaataactatagtggcatcc
cacactcttgaaagcattaccaacgctcctgtgacacatcagagcttttt
gttgtctaaatgagtgaccttcgcttcattccacctgctgtcccactgcg
tgagactgcacctactcatcactgcgctgatattctggcagaagaaataa
tctaaaggatcagatcagccttggcctgagggtacgagctggtacgctga
tgacagtagcctcgaggttaaaggtaagaagaagtcggggacagcagtat
ggtggtgaacagaaagcaagtgatctaggccagcagccttcctgagggac
ttcggcccagaaagctgaacttgtgactttaagacaagctctataaatgg
caaaagaaaagtctacactgacaacaggtatgtttttgccactgtacggg
gcaatatacaaagagggctgttgacatctgcagaaaaagacctaagatgc
tgtggctaaagaaaatcagatggcagatctaaccgccaaacaggtggccc
aaggagcaatgatcctggcagtcaaggagcctaaagattattatgacatc
agagagaccagctttagatacaccctgagcactatcaagttatggacagt
attgacttgacctggggcaagaaatcaagcgtgttagtccttgactacta
tgtacaggacttctctgactgacaaagaaagagtcaagctgcagactgtg
cctatgatgagtaaacctttctaaaggaactccaagttattggaacctgc
ctgtgcaagtaatcaggactggccaagaatatggggatgtgtctcgaaag
attcacatttgtcgctgt
gaattccctgatggatactaagatggatctgatgggtaaagcatttgtca
cttttactacttctgtaaggtttctttccatgataaattctctgctgact
ttgaagtttttctctctgggtaagatatttgtcaaattcactacatttgt
aagggttcactccagtattgttccgtttcaccatgactttatgtttagaa
acaaaaaccttcgcaaattctgcatttcggttgtgttttttcttctgcat
gtggattccttgattgagactaatggtagaaaacaaacttacactgttta
cagagtcattgtatttgcaaacttctttagtgttcctgggcttaagtctt
tttttgttcgagtattgaagagagccgtgataagttttgtaaggtgtaca
ttggggggattcaagaatcaccttgctaagcttgtcccatttagaagact
tctcttgaatattcatgtgttcatggacaatgtactggctgtcttgatcc
aagaccttcctatactttccacgtatgcaatgattttctgaaaaaaacaa
aaacaaaaacaaaatggggcaattagaggtgacatgaattacttatataa
ggaataagggactcaataaccagtgagcttatggattcatactctcaaga
gaggtttctctctctctcctttttttttttttggaattattacatgtatc
ctcaaagaacctcaaatatgatctatatctatatcaagtgattgaaaatg
ataatagcctgctaaattttattttcaaattagacatcatacccacctca
aatatattaacccagaattgctcctgtcttaagaaaaagagggacaaaga
atggaaaagaggctgaatggaaggccatccagagactggaccaaagagat
gcagatacttgcagccaccattggactgagcaagggaccacaatgagagt
taggagcctgagaagctgaggctttgcaactgtgtagagaaaacatatca
gacccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146632017_146633038
seq2: B6Ng01-334P06.g_67_1075 (reverse)

seq1  TTGTGGGTCTTGATATTGTTTTTCCTCCTACACAGTTGCAAAGCCCTTCA  50
      ||||||||| ||||| ||||||  || ||||||||||||||||||  |||
seq2  TTGTGGGTC-TGATA-TGTTTT--CT-CTACACAGTTGCAAAGCC--TCA  43

seq1  GCTTCTTCAGGCCTTCCCTTAACTCCTTCATTGTGGTCCCCTTGCTCAGT  100
      ||||| ||||||  |||  ||||||  |||||||||| ||||||||||||
seq2  GCTTC-TCAGGC--TCC--TAACTC--TCATTGTGGT-CCCTTGCTCAGT  85

seq1  CCAATGGTTGGCTGCAAGGATCTGGATCTCTTTGGTCCAGTCTCTGGATG  150
      ||||||| |||||||||| ||||| |||||||||||||||||||||||||
seq2  CCAATGG-TGGCTGCAAGTATCTGCATCTCTTTGGTCCAGTCTCTGGATG  134

seq1  GCCTTCCCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCTTAAGAC  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCATTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCTTAAGAC  184

seq1  AGGAGCAATTCTGGGTTAATATATTTGAGGTGGGTATGATGTCTAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAATTCTGGGTTAATATATTTGAGGTGGGTATGATGTCTAATTTG  234

seq1  AAAATAAAATTTAGCAGGCTATTATCATTTTCAATCACTTGATATAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATTTAGCAGGCTATTATCATTTTCAATCACTTGATATAGATA  284

seq1  TAGATCATATTTGAGGTTCTTTGAGGATACATGTAATAATTCCAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATATTTGAGGTTCTTTGAGGATACATGTAATAATTCCAAAAAAA  334

seq1  AAGGA--GAGAGAGAGAGAAACCTCTCTTGAGAGTATGAATCCATAAGCT  398
      ||  |  |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAGAGAGAGAGAAACCTCTCTTGAGAGTATGAATCCATAAGCT  384

seq1  CACTGGTTATTGAGTCCCTTATTCGTTTTATAAGTAATTCATGTCACCTC  448
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  CACTGGTTATTGAGTCCCTTATTCCTTATATAAGTAATTCATGTCACCTC  434

seq1  TAATTGCCCCATTTTGTTTTTGTTTTTGTTTTTTTCAGAAAATCATTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCCCATTTTGTTTTTGTTTTTGTTTTTTTCAGAAAATCATTGCA  484

seq1  TACGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGTACATTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGTACATTGTC  534

seq1  CATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAG  584

seq1  CAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAACTTATCACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAACTTATCACG  634

seq1  GCTCTCTTCAATACTCGAACAAAAAAAGACTTAAGCCCAGGAACAC-AAA  697
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTCTCTTCAATACTCGAACAAAAAAAGACTTAAGCCCAGGAACACTAAA  684

seq1  GAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTGTTTTCTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTGTTTTCTAC  734

seq1  CATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACACAACTGAA  797
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACACAACCGAA  784

seq1  ATGCAGAATTTGCGAATGTTTTTGTTTCTAAACATAAAGTCATGGTGAAA  847
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGCAGAATTTGCGAAGGTTTTTGTTTCTAAACATAAAGTCATGGTGAAA  834

seq1  CGGAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTTCACAAATA  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGGAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTTGACAAATA  884

seq1  TCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTATCATGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTATCATGGAA  934

seq1  AGAAATCTTACAGAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATC  997
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTACAGAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATC  984

seq1  CATCTTAGTATCCATCAGGGAATTC  1022
      |||||||||||||||||||||||||
seq2  CATCTTAGTATCCATCAGGGAATTC  1009