BAC Information

Click to search

BAC

Clone NameB6Ng01-341E20
Chromosome4 (Build37)
Map Location 107,677,189 - 107,850,330
singlet/doubletdoublet
Overlap geneSlc1a7, Podn, Scp2, Echdc2
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2
Downstream geneZyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341E20.bB6Ng01-341E20.g
ACCGA124721GA124722
length1,079459
definitionB6Ng01-341E20.b B6Ng01-341E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,849,257 - 107,850,330)(107,677,189 - 107,677,653)
sequence
gaattctgggatgataggtgccatcatgacttcccactaatcttcagctc
aagcaaacatcctttgttattttctgagatggggttcctctgcatagccc
tggctagccttgaaatccatgatcttcctgcctccagagtgctggtatta
aaagcatgcctgtccaccctcacattatttaactcagcactcctcagtgc
catggccactatctacacatggctacgtaacaaactattcatcagtagga
gaaagaaatcattttgccagaccatccacctgcctccacctcctagacgt
gtgctatctttcaaatacaaattgtgatgtgaaggtgatctggtgtgaca
tctataatatcattaatgccatgtaagcagtgaactacttcatccccgca
tctcagttcctttcaggtctggtgcagttgacagataagaattgacagat
aaactaatatcctgagacctgcccttgtgttatataactaaccaccagcc
caaacacaggtacatgagctgaggaccgtatgaggacctgctgccccccc
ctccccccagccaattggctaggatgacaaatcctgaccagtagagtctt
acctccattcctctgtcgatggcaactttgcccaggcgcacagcaatggg
agcctaggagagagaacatcccgggtcttgaacttgaacttggaatgtgt
agctcttacaaaggaaggtgcaggtctgggtctgggtccagctttcccac
tggtagggattatttctgttctgtttcatccttctatgtcttaaagcttc
ctcccagaagttgtctttcagcctattctccaacatgcccttcacattag
tctttggtgctggacattaaacctagaaacttcaccaagctgggcaagtg
ctctccttacagccctaagacccacagtgggcccctcacttccgagcaaa
cactttgctgaagctgctgagggcttgtctttcctgtggtccttagccct
cagattatagcatatgccacgtgtcagagttcttatggaaaatacattat
attgatgcgaaatagaggcctcatgggat
ctgccccatggggctcccctcctacctcagtccagccctcaatccctcgc
agaagtctgttattgggcctttccctgaagtcatgagagttggggaagga
ttgtcactgtgtgtggagtctttcatcctacgttcgaggctttcccgagc
tgcctctctctctccagagcttctgtgacatttctcgaggctcacagtgg
cctccctgagcaggtctttccctttgcaactattttatgggtctccagcc
acaatgatttgccataagccactaagggtgtgacttggggtcccttattt
gtatgtgaaccttcaaaggcatgtgcctttttgttgttgttgagggaggt
agttttatattcttgggtttgtgttttaaactttttctttacttttgaaa
atttcatacgtgtatataatgaatacagtttttggttggttgttgggttt
tgtttttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107849257_107850330
seq2: B6Ng01-341E20.b_42_1120 (reverse)

seq1  ATCCCATGA-GCCTCTATTTCGCATCAATATAATGTATTTTCCATAAGGA  49
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ATCCCATGAGGCCTCTATTTCGCATCAATATAATGTATTTTCCATAAGAA  50

seq1  CTCTGACCACGTGGCATATGCCTATAATCTGA-GGCTAAGGACCACAGGG  98
      |||||| ||||||||||||| ||||||||||| |||||||||||||| ||
seq2  CTCTGA-CACGTGGCATATG-CTATAATCTGAGGGCTAAGGACCACA-GG  97

seq1  AAAGAC-AGGCCTCAGCAGC-TCAGC-AAGTGTTTGCTCGGAAGTGAGGG  145
      |||||| || |||||||||| ||||| |||||||||||||||||||||||
seq2  AAAGACAAGCCCTCAGCAGCTTCAGCAAAGTGTTTGCTCGGAAGTGAGGG  147

seq1  GCCCACTGTGGGTC-TAAGGCTGT-AGGAGAGCACTTGCCCAGCTTGGGT  193
      |||||||||||||| || |||||| ||||||||||||||||||||| |||
seq2  GCCCACTGTGGGTCTTAGGGCTGTAAGGAGAGCACTTGCCCAGCTT-GGT  196

seq1  GAAG-TTCTAGGTTTAATGTCCAGCACCAAAGACTAATGTGAAGGGCATG  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCTAGGTTTAATGTCCAGCACCAAAGACTAATGTGAAGGGCATG  246

seq1  TTGGAGAATAGGCTGAAAGACAACTTCTGGGAGGAAGCTTTAAGACATAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATAGGCTGAAAGACAACTTCTGGGAGGAAGCTTTAAGACATAG  296

seq1  AAGGATG-AACAGAACAGAAATAATCCCTACCAGTGGGAAAGCTGGACCC  341
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAAACAGAACAGAAATAATCCCTACCAGTGGGAAAGCTGGACCC  346

seq1  AGACCCAGACCTGCACCTTCCTTTGTAAGAGCTACACATTCCAAGTTCAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGACCTGCACCTTCCTTTGTAAGAGCTACACATTCCAAGTTCAA  396

seq1  GTTCAAGACCCGGGATGTTCTCTCTCCTAGGCTCCCATTGCTGTGCGCCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGACCCGGGATGTTCTCTCTCCTAGGCTCCCATTGCTGTGCGCCT  446

seq1  GGGCAAAGTTGCCATCGACAGAGGAATGGAGGTAAGACTCTACTGGTCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGTTGCCATCGACAGAGGAATGGAGGTAAGACTCTACTGGTCAG  496

seq1  GATTTGTCATCCTAGCCAATTGGCTGGGGGGAGGGGGGGGCAGCAGGTCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCATCCTAGCCAATTGGCTGGGGGGAGGGGGGGGCAGCAGGTCC  546

seq1  TCATACGGTCCTCAGCTCATGTACCTGTGTTTGGGCTGGTGGTTAGTTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACGGTCCTCAGCTCATGTACCTGTGTTTGGGCTGGTGGTTAGTTAT  596

seq1  ATAACACAAGGGCAGGTCTCAGGATATTAGTTTATCTGTCAATTCTTATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAAGGGCAGGTCTCAGGATATTAGTTTATCTGTCAATTCTTATC  646

seq1  TGTCAACTGCACCAGACCTGAAAGGAACTGAGATGCGGGGATGAAGTAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTGCACCAGACCTGAAAGGAACTGAGATGCGGGGATGAAGTAGT  696

seq1  TCACTGCTTACATGGCATTAATGATATTATAGATGTCACACCAGATCACC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTTACATGGCATTAATGATATTATAGATGTCACACCAGATCACC  746

seq1  TTCACATCACAATTTGTATTTGAAAGATAGCACACGTCTAGGAGGTGGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCACAATTTGTATTTGAAAGATAGCACACGTCTAGGAGGTGGAG  796

seq1  GCAGGTGGATGGTCTGGCAAAATGATTTCTTTCTCCTACTGATGAATAGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATGGTCTGGCAAAATGATTTCTTTCTCCTACTGATGAATAGT  846

seq1  TTGTTACGTAGCCATGTGTAGATAGTGGCCATGGCACTGAGGAGTGCTGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACGTAGCCATGTGTAGATAGTGGCCATGGCACTGAGGAGTGCTGA  896

seq1  GTTAAATAATGTGAGGGTGGACAGGCATGCTTTTAATACCAGCACTCTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAATGTGAGGGTGGACAGGCATGCTTTTAATACCAGCACTCTGG  946

seq1  AGGCAGGAAGATCATGGATTTCAAGGCTAGCCAGGGCTATGCAGAGGAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGATCATGGATTTCAAGGCTAGCCAGGGCTATGCAGAGGAAC  996

seq1  CCCATCTCAGAAAATAACAAAGGATGTTTGCTTGAGCTGAAGATTAGTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCAGAAAATAACAAAGGATGTTTGCTTGAGCTGAAGATTAGTGG  1046

seq1  GAAGTCATGATGGCACCTATCATCCCAGAATTC  1074
      |||||||||||||||||||||||||||||||||
seq2  GAAGTCATGATGGCACCTATCATCCCAGAATTC  1079

seq1: chr4_107677189_107677653
seq2: B6Ng01-341E20.g_71_535

seq1  GAATTCCTGCCCCATGGGGCTCCCCTCCTACCTCAGTCCAGCCCTCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCCATGGGGCTCCCCTCCTACCTCAGTCCAGCCCTCAATC  50

seq1  CCTCGCAGAAGTCTGTTATTGGGCCTTTCCCTGAAGTCATGAGAGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCAGAAGTCTGTTATTGGGCCTTTCCCTGAAGTCATGAGAGTTGGG  100

seq1  GAAGGATTGTCACTGTGTGTGGAGTCTTTCATCCTACGTTCGAGGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTGTCACTGTGTGTGGAGTCTTTCATCCTACGTTCGAGGCTTTC  150

seq1  CCGAGCTGCCTCTCTCTCTCCAGAGCTTCTGTGACATTTCTCGAGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTGCCTCTCTCTCTCCAGAGCTTCTGTGACATTTCTCGAGGCTCA  200

seq1  CAGTGGCCTCCCTGAGCAGGTCTTTCCCTTTGCAACTATTTTATGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCTCCCTGAGCAGGTCTTTCCCTTTGCAACTATTTTATGGGTCT  250

seq1  CCAGCCACAATGATTTGCCATAAGCCACTAAGGGTGTGACTTGGGGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACAATGATTTGCCATAAGCCACTAAGGGTGTGACTTGGGGTCCC  300

seq1  TTATTTGTATGTGAACCTTCAAAGGCATGTGCCTTTTTGTTGTTGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATGTGAACCTTCAAAGGCATGTGCCTTTTTGTTGTTGTTGAG  350

seq1  GGAGGTAGTTTTATATTCTTGGGTTTGTGTTTTAAACTTTTTCTTTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTTTTATATTCTTGGGTTTGTGTTTTAAACTTTTTCTTTACTT  400

seq1  TTGAAAATTTCATACGTGTATATAATGAATACAGTTTTTGGTTGGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTCATACGTGTATATAATGAATACAGTTTTTGGTTGGTTGTT  450

seq1  GGGTTTTGTTTTTTG  465
      ||||||||||||| |
seq2  GGGTTTTGTTTTTAG  465