BAC Information

Click to search

BAC

Clone NameB6Ng01-343C04
Chromosome4 (Build37)
Map Location 88,093,535 - 88,239,207
singlet/doubletdoublet
Overlap geneIfnb1, OTTMUSG00000007655, Ifna14, Ifna9
Upstream geneMllt3, BC057079, Ptplad2
Downstream geneMrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343C04.bB6Ng01-343C04.g
ACCGA125996GA125997
length4691,127
definitionB6Ng01-343C04.b B6Ng01-343C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,093,535 - 88,094,006)(88,238,074 - 88,239,207)
sequence
acaggctttcttgtacctggcggagaaagctgacactactggcttgtagt
tcttccaagatgtttagaaactttgttaccgtaccgcatctttggtacag
aggccatactaggtggaggtaaggggtccagggcacagactttttgaaag
gtgtccttttgggcttcagtataaggagctggaacctctcaaggtttgca
gtccaggatctcctgatcatccctacacgccccctgggagcggggcgggg
cggggtggggggtggggcttagcctgggcctgtggcaccaaagggagaaa
taacagggcggtggctacaatctactattttaattccctaggctagtgtg
gttcctttatggcttcctccttagtttctttttctctatggcttattttt
aaaagtcagcctactgtgccccgagggttgctatcatcaaagtatgtctt
tgggagaatttggaaattt
gaattcaatatgtcaaagaaaaatgcacacagaggttcacagaccacatg
agttgcctgtcacaaatgagtgagtgtgtgaatgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgagagagagagagagagagaaagagagagagaatg
cttaagcttgccatattgtgactattctgatgagggctcctgagttatat
tggttctctaccgtaactgggttccaggaatcacactcagctcctcaagt
ttaacagcaagccttgttgtaccctgtatctgcataattacattaaaatc
attggatagatagctgctatacagtaattattaaattaagttttatataa
atttatattacatttgaaaaaggaaacttgaaaaactcaattttatgact
ttaaatattgagaaaatttaaagtatatcttttcttcagtgtattgtaat
ttgttaaaatttacaacatactctacattatgatataaatatctttgtaa
gagatataaataaaaattctttttagaataaactttaataacttttatgg
aatattttacagaaaaatttgccttacaatacatttgtaagtttcaaata
aagactttatatacgatgtaatagattagaaattaatcatagaaaaagaa
aactggtaaaacagtttttgttggggagcagtgaaagaggaagcaatagt
gaaaaaaaatggtttagaaaaatacccagacccaagcagagaatgtgggt
aaagaaagcgaaaagaccagtgggaagtatggagagggcatttggaaaat
gaaaattagtgttttgccctatttaagacacatctacataggatggtctc
agagaacctagtaggggaaggttcatgaccaaacagcccacaagagcagc
agcatcttcaggactcataatggctaggccctttgctttctgatgtcttg
gtggtgataagctactggtcacctgctctctaggatgtgacctgcctcaa
ctcatacctcagaacaagaaaaatcttgaaccctcctgtcacaaatgtag
gagactctcccctctcttcctgcctgaagacatatgtactttgattctcc
cttgaaaagtggatgcccacgatccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88093535_88094006
seq2: B6Ng01-343C04.b_47_521

seq1  GAATTCACAGGCTTTCTTGTACCTGGCGGAGAAAGCTGACACTACTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCTTTCTTGTACCTGGCGGAGAAAGCTGACACTACTGGCT  50

seq1  TGTAGTTCTTCCAAGATGTTTAGAAACTTTGTTACCGTACCGCATCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCTTCCAAGATGTTTAGAAACTTTGTTACCGTACCGCATCTTTG  100

seq1  GTACAGAGGCCATACTAGGTGGAGGTAAGGGGTCCAGGGCACAGACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGGCCATACTAGGTGGAGGTAAGGGGTCCAGGGCACAGACTTTT  150

seq1  TGAAAGGTGTCCTTTTGGGCTTCAGTATAAGGAGCTGGAACCTCTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTGTCCTTTTGGGCTTCAGTATAAGGAGCTGGAACCTCTCAAGG  200

seq1  TTTGCAGTCCAGGATCTCCTGATCATCCCTACACGCCCCCTGGGAGCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTCCAGGATCTCCTGATCATCCCTACACGCCCCCTGGGAGCGGG  250

seq1  GCGGGGCGGGGTGGGGGGTGGGGCTTAGCCTGGGCCTGTGGCACCGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCGGGGCGGGGTGGGGGGTGGGGCTTAGCCTGGGCCTGTGGCACCAAAGG  300

seq1  GAGAAATAACAGGGCGGTGGCTACAATCTACTATTTTAATTCCCTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAACAGGGCGGTGGCTACAATCTACTATTTTAATTCCCTAGGCT  350

seq1  AGTGTGGTTCCTTTATGGCTTCCTCCTTAGTTTC-TTTTCTCTATGGCTT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGTGGTTCCTTTATGGCTTCCTCCTTAGTTTCTTTTTCTCTATGGCTT  400

seq1  A-TTTTAAAAGTCAGCCTACTGTGCCCCAAGTGTTGCTATCATTAAAGTA  448
      | |||||||||||||||||||||||||| || ||||||||||| ||||||
seq2  ATTTTTAAAAGTCAGCCTACTGTGCCCCGAGGGTTGCTATCATCAAAGTA  450

seq1  -GTCTTTAGGAGAATTTGGAAATTT  472
       |||||| |||||||||||||||||
seq2  TGTCTTTGGGAGAATTTGGAAATTT  475

seq1: chr4_88238074_88239207
seq2: B6Ng01-343C04.g_66_1192 (reverse)

seq1  CTGGATCTGCTGGGCATCCACCTTCTCCTGGGGGAATCCAAAGTCCTTTC  50
      |||||||   |||||||||| ||| ||  ||| |||| |||||| |  | 
seq2  CTGGATC--GTGGGCATCCA-CTTTTCAAGGGAGAAT-CAAAGTAC-ATA  45

seq1  TGTCCTTCAGGCAAG-AGAGAGGGGAGAGTCTCCT-CATTTGTGCCAGGA  98
      ||| ||||||||| | ||||||||||||||||||| |||||||| |||||
seq2  TGT-CTTCAGGCAGGAAGAGAGGGGAGAGTCTCCTACATTTGTGACAGGA  94

seq1  GTG-TCAAGA-TTTTCTTGTTCCTGAGGTTATGAGTTTGAGGCAGGTCAC  146
      | | |||||| |||||||||| |||||| |||||| ||||||||||||||
seq2  GGGTTCAAGATTTTTCTTGTT-CTGAGG-TATGAG-TTGAGGCAGGTCAC  141

seq1  ATCCTAGAGAGCAGGTTGACCAGTAGCTTATCACCACCAAGACCATCAGG  196
      ||||||||||||||| |||||||||||||||||||||||||| ||||| |
seq2  ATCCTAGAGAGCAGG-TGACCAGTAGCTTATCACCACCAAGA-CATCA-G  188

seq1  AAAGCAAAGGGCCTAGCCATTATGAGTCTTGAAGATGCTGCTGCTCTTGT  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGCAAAGGGCCTAGCCATTATGAGTCCTGAAGATGCTGCTGCTCTTGT  238

seq1  GGGCTGTTTGGTCCTGAACCTTCCCCT-CTAGGTTCTCTGAAGACCATCC  295
      ||||||||||||| ||||||||||||| |||||||||||| |||||||||
seq2  GGGCTGTTTGGTCATGAACCTTCCCCTACTAGGTTCTCTG-AGACCATCC  287

seq1  TATGTAGATGTGTCTTAAATAGGGCAAAACACTAATTTTCATTTTCCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGATGTGTCTTAAATAGGGCAAAACACTAATTTTCATTTTCCAAA  337

seq1  TGCCCTCTCCATACTTCCCACTGGTCTTTTCGCTTTCTTTA-CCACATTC  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCCTCTCCATACTTCCCACTGGTCTTTTCGCTTTCTTTACCCACATTC  387

seq1  TCTGCTTGGGTCTGGGTATTTTTCTAAACCATTTTTTTTCACTATTGCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGGTCTGGGTATTTTTCTAAACCATTTTTTTTCACTATTGCTT  437

seq1  CCTCTTTCACTGCTCCCCAACAAAAACTGTTTTACCAGTTTTCTTTTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCACTGCTCCCCAACAAAAACTGTTTTACCAGTTTTCTTTTTCT  487

seq1  ATGATTAATTTCTAATCTATTACATCGTATATAAAGTCTTTATTTGAAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAATTTCTAATCTATTACATCGTATATAAAGTCTTTATTTGAAAC  537

seq1  TTACAAATGTATTGTAAGGCAAATTTTTCTGTAAAATATTCCATAAAAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGTATTGTAAGGCAAATTTTTCTGTAAAATATTCCATAAAAGT  587

seq1  TATTAAAGTTTATTCTAAAAAGAATTTTTATTTATATCTCTTACAAAGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTTTATTCTAAAAAGAATTTTTATTTATATCTCTTACAAAGAT  637

seq1  ATTTATATCATAATGTAGAGTATGTTGTAAATTTTAACAAATTACAATAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCATAATGTAGAGTATGTTGTAAATTTTAACAAATTACAATAC  687

seq1  ACTGAAGAAAAGATATACTTTAAATTTTCTCAATATTTAAAGTCATAAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAAAGATATACTTTAAATTTTCTCAATATTTAAAGTCATAAAA  737

seq1  TTGAGTTTTTCAAGTTTCCTTTTTCAAATGTAATATAAATTTATATAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTTCAAGTTTCCTTTTTCAAATGTAATATAAATTTATATAAAA  787

seq1  CTTAATTTAATAATTACTGTATAGCAGCTATCTATCCAATGATTTTAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTAATAATTACTGTATAGCAGCTATCTATCCAATGATTTTAATG  837

seq1  TAATTATGCAGATACAGGGTACAACAAGGCTTGCTGTTAAACTTGAGGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGCAGATACAGGGTACAACAAGGCTTGCTGTTAAACTTGAGGAG  887

seq1  CTGAGTGTGATTCCTGGAACCCAGTTACGGTAGAGAACCAATATAACTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTGATTCCTGGAACCCAGTTACGGTAGAGAACCAATATAACTCA  937

seq1  GGAGCCCTCATCAGAATAGTCACAATATGGCAAGCTTAAGCATTCTCTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTCATCAGAATAGTCACAATATGGCAAGCTTAAGCATTCTCTCT  987

seq1  CTCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACA  1037

seq1  CACACACATTCACACACTCACTCATTTGTGACAGGCAACTCATGTGGTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATTCACACACTCACTCATTTGTGACAGGCAACTCATGTGGTCT  1087

seq1  GTGAACCTCTGTGTGCATTTTTCTTTGACATATTGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTCTGTGTGCATTTTTCTTTGACATATTGAATTC  1127