BAC Information

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BAC

Clone NameB6Ng01-343P08
Chromosome4 (Build37)
Map Location 21,588,813 - 21,719,457
singlet/doubletdoublet
Overlap genePrdm13, Ccnc, 2610029I01Rik, Usp45
Upstream geneE130310K16Rik
Downstream gene4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343P08.bB6Ng01-343P08.g
ACCGA126589GA126590
length9471,082
definitionB6Ng01-343P08.b B6Ng01-343P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,718,846 - 21,719,457)(21,588,813 - 21,589,902)
sequence
gaattccaaaacaacccacaaaataaaaggctaaagtacataaagatgaa
gctttgttgtcaagtaatattacactggaatgtaatatcagaatttgtga
attgcctcaattaagccagagaaaaccactgtttcttcccacttttctta
caagagggagcaatgcttgttttgagtttttcttacttactatatgagtt
tgagcaaagtatgtcggcacacacctgtaaccccagcatttgggaagtag
ggacagctttgatgaatgcctggggggtcttgtttattaacgcatggtat
cttttcttcccaactccttgttatgcatggaaattactaaattgttttag
aattaatgttttaatgatcaaaatatttttttctttttcttttttttttt
tttggtgatcaaaatattttatttcttacacctggcatactcttggagga
catcaggcctaaccactcccctagtttcttgctctcaacatcttaatgtg
ctggctagttttatgtcaacttgccacaagctagaatcatcagagaggtg
actcttatttttttcaattaagaaatatatccttaagatcaggctgcaga
caggcctgtagagcactttcttatttagcaattgatgtgggaggacccag
cctcttgttggtagggctgcatctggactggtggtcctgggttctacaag
aaagcaggctgagcaagccaggaggagcaagccagtaagcagcatccctt
cacggcctctgcatcagctcctgcctccaggatcctgtcctgcttgagtt
catgccctactccttttgaagatgaactgttgttttgtggaactgtgggt
aaaataaaccctttcttccccaagttgcatttagtcatggtgttttatca
ctgcaataataaccctaagacagactggtaccaggaccatggggcat

gaattcagcactgagaagatggctaggaggtagagcacttgcccagcaag
tatgaggaaatgagtttgatccttagccccatgtaaaatcccaggcatag
ccatgcacacctataaactcagcactttggggagtgcagacgggattgct
ggagcttgcaggccaccaaccaagctccaggttccgtgagagaccatgtc
ccaggggaataaggatgatagagcaagacagcccgcagcctcctctgacc
ttcaggtgcacactcacacatgtgcacgtacaaatgccaggtatacattc
acactcacacacatgcgcacacacataccatgcatacattcacacatgtc
tggtgaacacaacttaacataatgtcggggcattaatgtgacatgccaaa
ctgcttaaacttcacaaaccaggaaatagtgagagaagctgcataaggcc
cacagttcttttctgtagaacattcccagtggcctaaaaaccctccataa
ggccctacctcctaaaagcactacccagtagtgccgccttaaaaactgaa
atctttagggaacaagtgcataaaacaggttattagatttcccatgtctt
tcaatatttccttcctctgccttctgcgtgctcctcttcagtcctgaagt
tttccacataagtgcctggaccacagtcccaggaagcacatccaatcttc
tggttgcagccacctcctgtcttacaaataacccagtcccatgttgattg
tcagaaacacattccgtggacacagagggcagtgaccagacaagattcat
caatggatgctaatataatcaatcaatcactcctggttttctgaaaccct
ctcagctcttgatattttgatgatgccatatcttcacctggttacatttc
tgaggccctcaaaggagataatgtgttaggcactgccaggcactacctct
agagaagaggaaagtaaattacaggttcgctctcagtcgttctcagctca
gatcgatagatatcagaaagctgcactgtctatcatgtgtagtcacactt
tggagtagaatggggagagaagctccagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21718846_21719457
seq2: B6Ng01-343P08.b_48_659 (reverse)

seq1  TCTACAGGCCTGTCTGCAGCCTGATCTTAAGGATATATTTCTTAATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGCCTGTCTGCAGCCTGATCTTAAGGATATATTTCTTAATTGAA  50

seq1  AAAAATAAGAGTCACCTCTCTGATGATTCTAGCTTGTGGCAAGTTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGAGTCACCTCTCTGATGATTCTAGCTTGTGGCAAGTTGACAT  100

seq1  AAAACTAGCCAGCACATTAAGATGTTGAGAGCAAGAAACTAGGGGAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGCCAGCACATTAAGATGTTGAGAGCAAGAAACTAGGGGAGTGG  150

seq1  TTAGGCCTGATGTCCTCCAAGAGTATGCCAGGTGTAAGAAATAAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTGATGTCCTCCAAGAGTATGCCAGGTGTAAGAAATAAAATATT  200

seq1  TTGATCACCAAAAAAAAAAAAAAGAAAAAGAAAAAAATATTTTGATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACCAAAAAAAAAAAAAAGAAAAAGAAAAAAATATTTTGATCATT  250

seq1  AAAACATTAATTCTAAAACAATTTAGTAATTTCCATGCATAACAAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTAATTCTAAAACAATTTAGTAATTTCCATGCATAACAAGGAGT  300

seq1  TGGGAAGAAAAGATACCATGCGTTAATAAACAAGACCCCCCAGGCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAAAGATACCATGCGTTAATAAACAAGACCCCCCAGGCATTCA  350

seq1  TCAAAGCTGTCCCTACTTCCCAAATGCTGGGGTTACAGGTGTGTGCCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTGTCCCTACTTCCCAAATGCTGGGGTTACAGGTGTGTGCCGAC  400

seq1  ATACTTTGCTCAAACTCATATAGTAAGTAAGAAAAACTCAAAACAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCTCAAACTCATATAGTAAGTAAGAAAAACTCAAAACAAGCAT  450

seq1  TGCTCCCTCTTGTAAGAAAAGTGGGAAGAAACAGTGGTTTTCTCTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTCTTGTAAGAAAAGTGGGAAGAAACAGTGGTTTTCTCTGGCTT  500

seq1  AATTGAGGCAATTCACAAATTCTGATATTACATTCCAGTGTAATATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGCAATTCACAAATTCTGATATTACATTCCAGTGTAATATTACT  550

seq1  TGACAACAAAGCTTCATCTTTATGTACTTTAGCCTTTTATTTTGTGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAAAGCTTCATCTTTATGTACTTTAGCCTTTTATTTTGTGGGTT  600

seq1  GTTTTGGAATTC  612
      ||||||||||||
seq2  GTTTTGGAATTC  612


seq1: chr4_21588813_21589902
seq2: B6Ng01-343P08.g_68_1149

seq1  GAATTCAGCACTGAGAAGATGGCTAGGAGGTAGAGCACTTGCCCAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGAGAAGATGGCTAGGAGGTAGAGCACTTGCCCAGCAAG  50

seq1  TATGAGGAAATGAGTTTGATCCTTAGCCCCATGTAAAATCCCAGGCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAAATGAGTTTGATCCTTAGCCCCATGTAAAATCCCAGGCATAG  100

seq1  CCATGCACACCTATAAACTCAGCACTTTGGGGAGTGCAGACGGGATTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACACCTATAAACTCAGCACTTTGGGGAGTGCAGACGGGATTGCT  150

seq1  GGAGCTTGCAGGCCACCAACCAAGCTCCAGGTTCCGTGAGAGACCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGCAGGCCACCAACCAAGCTCCAGGTTCCGTGAGAGACCATGTC  200

seq1  CCAGGGGAATAAGGATGATAGAGCAAGACAGCCCGCAGCCTCCTCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAATAAGGATGATAGAGCAAGACAGCCCGCAGCCTCCTCTGACC  250

seq1  TTCAGGTGCACACTCACACATGTGCACGTACAAATGCCAGGTATACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGCACACTCACACATGTGCACGTACAAATGCCAGGTATACATTC  300

seq1  ACACTCACACACATGCGCACACACATACCATGCATACATTCACACATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACATGCGCACACACATACCATGCATACATTCACACATGTC  350

seq1  TGGTGAACACAACTTAACATAATGTCGGGGCATTAATGTGACATGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACACAACTTAACATAATGTCGGGGCATTAATGTGACATGCCAAA  400

seq1  CTGCTTAAACTTCACAAACCAGGAAATAGTGAGAGAAGCTGCATAAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAAACTTCACAAACCAGGAAATAGTGAGAGAAGCTGCATAAGGCC  450

seq1  CACAGTTCTTTTCTGTAGAACATTCCCAGTGGCCTAAAAACCCTCCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTTTTCTGTAGAACATTCCCAGTGGCCTAAAAACCCTCCATAA  500

seq1  GGCCCTACCTCCTAAAAGCACTACCCAGTAGTGCCGCCTTAAAAACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTACCTCCTAAAAGCACTACCCAGTAGTGCCGCCTTAAAAACTGAA  550

seq1  ATCTTTAGGGAACAAGTGCATAAAACAGGTTATTAGATTTCCCATGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGGGAACAAGTGCATAAAACAGGTTATTAGATTTCCCATGTCTT  600

seq1  TCAATATTTCCTTCCTCTGCCTTCTGCGTGCTCCTCTTCAGTCCTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTCCTTCCTCTGCCTTCTGCGTGCTCCTCTTCAGTCCTGAAGT  650

seq1  TTTCCACATAAGTGCCTGGACCACAGTCCCAGGAAGCACATCCAATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACATAAGTGCCTGGACCACAGTCCCAGGAAGCACATCCAATCTTC  700

seq1  TGGTTGCAGCCACCTCCTGTCTTACAAATAACCCAGTCCCATGTTGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAGCCACCTCCTGTCTTACAAATAACCCAGTCCCATGTTGATTG  750

seq1  TCAGAAACACATTCCGTGGACACAGAGGGCAGTGACCAGACAAGATTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACACATTCCGTGGACACAGAGGGCAGTGACCAGACAAGATTCAT  800

seq1  CAATGGATGCTAATATAATCAATCAATCACTCCTGGTTTTCTGAAACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATGCTAATATAATCAATCAATCACTCCTGGTTTTCTGAAACCCT  850

seq1  CTCAGCTCTTGATATTTTGATGATGCCATATCTTCACCTGGTTACATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTTGATATTTTGATGATGCCATATCTTCACCTGGTTACATTTC  900

seq1  TGAGGCCCTCAAAGGAGATAATGTGTTAGGCACTGCCAGGCACTACCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCTCAAAGGAGATAATGTGTTAGGCACTGCCAGGCACTACCTCT  950

seq1  AGAGAAGAGGAAAGTAAATTTACAGGTTCGCCTCTCAGTCGTTCTCAGCT  1000
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AGAGAAGAGGAAAGTAAA-TTACAGGTTCG-CTCTCAGTCGTTCTCAGCT  998

seq1  CAGACCGAATAGATATCAGAAAGCTGGCACTGTCTATCATGTTGTTAGTC  1050
      |||| || ||||||||||||||||| ||||||||||||||||   |||||
seq2  CAGATCG-ATAGATATCAGAAAGCT-GCACTGTCTATCATGT--GTAGTC  1044

seq1  AACACTTTGGAGTAG-ATGGGGAGAGAAAGCTCCCAGCAAA  1090
       |||||||||||||| |||||||||| ||||| ||||||||
seq2  -ACACTTTGGAGTAGAATGGGGAGAG-AAGCT-CCAGCAAA  1082


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