BAC Information

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BAC

Clone NameB6Ng01-346C12
Chromosome4 (Build37)
Map Location 52,986,609 - 53,074,704
singlet/doubletdoublet
Overlap gene1700054F22Rik, Nipsnap3a, Abca1
Upstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270
Downstream gene4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346C12.bB6Ng01-346C12.g
ACCGA128134GA128135
length1,1381,213
definitionB6Ng01-346C12.b B6Ng01-346C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,073,558 - 53,074,704)(52,986,609 - 52,987,776)
sequence
gaattcattgggcagtttatgatgctcttccttaagtattcaggtgatgt
ggagaatcccatctagatattcaagtgaatactttcctggagataatttt
ggcttggtatgagcgagggacaagtgccaatggtcttggtggtgactggc
tgaggttcttgcgtaggccctggggtcctattgtttttgtctgttttctg
ccctgattcttacctgtatgatacgtgagcttggtttctatgtgatgaca
gagaaaacagaaaaccgcagacatccttcagaatctgacaggaagaaata
tttcagattacctggtgaagacgtacgtgcagatcatagcaaagaggtat
cgtcctgttgaaacctggcttgctgcagatgtagacttgagcggtaggga
aatggacaatcatggctctgtgggaaatttagcacttgatatcagttaga
caagatgatacgggggcttgtgagccttgaaagttcagcttagagaacga
ggctgcctgctttaggctgaaaataagtgacaaatgtggactcagatttg
aattctgacccattagtctcataacatcttcgcttatatgaattttaatt
tttattttacatttgatgttagtgttgcactcttaagttcgtggtgaggg
gtaagagagatgatacgagcaaaagcctgtagatcctctttcctgtatgg
ctccataaacaaggtcagggtagacacagtagcctttctttcatatggag
cctttaaagagacttgtaaattcctgggacatggtcatatagtgaccaat
atttagtcagtgtgcagagaatatgtttcctttccataagtatggtcagg
tgtccggtccataatgtttgaactaactttaaatgacaaggatataatag
aataagaataggccatgcatttctcagagctgtaatgttgccacatgaga
gtcacataaacagcatttagttcagtaatattctgggatggtaatgcatt
tatttgtgtgtctgtttgttttagacaggtctctgggtctgtagcatatt
attgtctgatacttaggacaggtctcaactaacattagtcctgctgtcct
gtattccctctataaggattacgttgtcctcagactca

gaattcttgtcctccaatattatttgtcaaagcaaatcttacctttaagg
tcaccctgcactacctgtcacaaaataagcaaaagcaaaaaaaaaaaaga
gagagagagagagagaaagaaaagaaaagaaatgagtatccactgagggg
aaacccagctgggagctgaggcgctgcacaaccttgtgcaggattgtcct
gggtgtgatacgacctttcctttccctgggctgcaagtgaactgagaatg
ggcatttgtctttctgactgtagacaaatgtaaccagctgccttaagctc
ccgtttccatgacttccacatcatgaactatgagccaaaataaactctct
taaaaaaaaaaaaagtgtgtgctgaatgagtgaatgaaccaatgtggttg
attgtcttgtactgaaaaaaaataaggtttttgccattgcctgtgcaatc
cttatggttgtcattctaattaaaactctctctctctctctctctctctc
taactgagcatgcctcccaacctgaccatgcctcccaacatgtctcctct
gacctcaagtgctgttaccactttccttgattttctgcacttaaactcct
acagcaatgtagttactctgatgtgctgtgtaaagatctgtactctcttt
taagaacatgcacagcgaatggtttattgaatgagcattaggggaagagc
tgtgaattatctggctttgtaatcccacagatattaacagagtggactta
tgtcatatgattcattgaattaattttgctctttttgtggtctatttgtc
ctttttaagaaataattttattgcatgtacttgtttgctatatgtgtgca
cgagcatgtgtgtattgtgttgtacatatgtgtgtatggcatgagtgtgt
tgatccagaagacagtttttccaggagtcagaatcttcttctttccaggt
atggaactttgagtcatcagtgtgcttagtagccagcattctttactcac
ttaggccaaacttaattggacccctttattttttcttttaaagagagaat
tggattttaaaaaatggtgtaccagggtgtcccttaattggatgccaact
tactggcagcaatatctcttgataaaatgaatatttccctttggattttg
ttattattgggttttcttaattctggacacatggaaggtttctaactgac
cgattttacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53073558_53074704
seq2: B6Ng01-346C12.b_49_1186 (reverse)

seq1  TGAGTCTGAGGCCACCCTAATCTATATAGAGAGAATTCCAGGACAGCCAG  50
      ||||||||||| || | |||||  ||||||| ||| | |||||||| |||
seq2  TGAGTCTGAGGACAACGTAATCCTTATAGAGGGAA-TACAGGACAG-CAG  48

seq1  GACTAATG-TAG-TGAGACCCTGTCTTAAGTAAACAGACAAATAAATAAA  98
      |||||||| ||| ||||| |||||| ||||| | ||||| ||||   | |
seq2  GACTAATGTTAGTTGAGA-CCTGTCCTAAGT-ATCAGAC-AATA---ATA  92

seq1  TGCCTTACAGACCCAGAGACCCTGTCTAAAACAAACAGACACACAAATAA  148
      |||  |||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGC--TACAGACCCAGAGA-CCTGTCTAAAACAAACAGACACACAAATAA  139

seq1  ATGCATTACCATCCCAG-ATATTACTGAACTAAATGCTGTTTATTGTGAC  197
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  ATGCATTACCATCCCAGAATATTACTGAACTAAATGCTGTTTA-TGTGAC  188

seq1  TCTCATGTGGCAACATTACAGCTCTGAGAAATGCATGGCCTATTCTTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTGGCAACATTACAGCTCTGAGAAATGCATGGCCTATTCTTATT  238

seq1  CTATTATATCCTTGTCATTTAAAGTTAGTTCAAACATTATGGACCGGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATATCCTTGTCATTTAAAGTTAGTTCAAACATTATGGACCGGACA  288

seq1  CCTGACCATACTTATGGAAAGGAAACATATTCTCTGCACACTGACTAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCATACTTATGGAAAGGAAACATATTCTCTGCACACTGACTAAAT  338

seq1  ATTGGTCACTATATGACCATGTCCCAGGAATTTACAAGTCTCTTTAAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCACTATATGACCATGTCCCAGGAATTTACAAGTCTCTTTAAAGG  388

seq1  CTCCATATGAAAGAAAGGCTACTGTGTCTACCCTGACCTTGTTTATGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATGAAAGAAAGGCTACTGTGTCTACCCTGACCTTGTTTATGGAG  438

seq1  CCATACAGGAAAGAGGATCTACAGGCTTTTGCTCGTATCATCTCTCTTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGGAAAGAGGATCTACAGGCTTTTGCTCGTATCATCTCTCTTAC  488

seq1  CCCTCACCACGAACTTAAGAGTGCAACACTAACATCAAATGTAAAATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCACGAACTTAAGAGTGCAACACTAACATCAAATGTAAAATAAA  538

seq1  AATTAAAATTCATATAAGCGAAGATGTTATGAGACTAATGGGTCAGAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTCATATAAGCGAAGATGTTATGAGACTAATGGGTCAGAATT  588

seq1  CAAATCTGAGTCCACATTTGTCACTTATTTTCAGCCTAAAGCAGGCAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGAGTCCACATTTGTCACTTATTTTCAGCCTAAAGCAGGCAGCC  638

seq1  TCGTTCTCTAAGCTGAACTTTCAAGGCTCACAAGCCCCCGTATCATCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCTAAGCTGAACTTTCAAGGCTCACAAGCCCCCGTATCATCTTG  688

seq1  TCTAACTGATATCAAGTGCTAAATTTCCCACAGAGCCATGATTGTCCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGATATCAAGTGCTAAATTTCCCACAGAGCCATGATTGTCCATT  738

seq1  TCCCTACCGCTCAAGTCTACATCTGCAGCAAGCCAGGTTTCAACAGGACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCGCTCAAGTCTACATCTGCAGCAAGCCAGGTTTCAACAGGACG  788

seq1  ATACCTCTTTGCTATGATCTGCACGTACGTCTTCACCAGGTAATCTGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTTTGCTATGATCTGCACGTACGTCTTCACCAGGTAATCTGAAA  838

seq1  TATTTCTTCCTGTCAGATTCTGAAGGATGTCTGCGGTTTTCTGTTTTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCCTGTCAGATTCTGAAGGATGTCTGCGGTTTTCTGTTTTCTC  888

seq1  TGTCATCACATAGAAACCAAGCTCACGTATCATACAGGTAAGAATCAGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACATAGAAACCAAGCTCACGTATCATACAGGTAAGAATCAGGG  938

seq1  CAGAAAACAGACAAAAACAATAGGACCCCAGGGCCTACGCAAGAACCTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGACAAAAACAATAGGACCCCAGGGCCTACGCAAGAACCTCA  988

seq1  GCCAGTCACCACCAAGACCATTGGCACTTGTCCCTCGCTCATACCAAGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCACCACCAAGACCATTGGCACTTGTCCCTCGCTCATACCAAGCC  1038

seq1  AAAATTATCTCCAGGAAAGTATTCACTTGAATATCTAGATGGGATTCTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCTCCAGGAAAGTATTCACTTGAATATCTAGATGGGATTCTCC  1088

seq1  ACATCACCTGAATACTTAAGGAAGAGCATCATAAACTGCCCAATGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCTGAATACTTAAGGAAGAGCATCATAAACTGCCCAATGAATTC  1138


seq1: chr4_52986609_52987776
seq2: B6Ng01-346C12.g_74_1286

seq1  GAATTCTTGTCCTCCAATATTATTTGTCAAAGCAAATCTTACCTTTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCTCCAATATTATTTGTCAAAGCAAATCTTACCTTTAAGG  50

seq1  TCACCCTGCACTACCTGTCACAAAATAAGCAAAAGCAAAAAAAAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGCACTACCTGTCACAAAATAAGCAAAAGCAAAAAAAAAAAAGA  100

seq1  GAGAGAGAGAGAGAGAAAGAAAAGAAAAGAAATGAGTATCCACTGAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAAAGAAAAGAAAAGAAATGAGTATCCACTGAGGGG  150

seq1  AAACCCAGCTGGGAGCTGAGGCGCTGCACAACCTTGTGCAGGATTGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCTGGGAGCTGAGGCGCTGCACAACCTTGTGCAGGATTGTCCT  200

seq1  GGGTGTGATACGACCTTTCCTTTCCCTGGGCTGCAAGTGAACTGAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGATACGACCTTTCCTTTCCCTGGGCTGCAAGTGAACTGAGAATG  250

seq1  GGCATTTGTCTTTCTGACTGTAGACAAATGTAACCAGCTGCCTTAAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTCTTTCTGACTGTAGACAAATGTAACCAGCTGCCTTAAGCTC  300

seq1  CCGTTTCCATGACTTCCACATCATGAACTATGAGCCAAAATAAACTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTCCATGACTTCCACATCATGAACTATGAGCCAAAATAAACTCTCT  350

seq1  TAAAAAAAAAAAAAGTGTGTGCTGAATGAGTGAATGAACCAATGTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAGTGTGTGCTGAATGAGTGAATGAACCAATGTGGTTG  400

seq1  ATTGTCTTGTACTGAAAAAAAATAAGGTTTTTGCCATTGCCTGTGCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTGTACTGAAAAAAAATAAGGTTTTTGCCATTGCCTGTGCAATC  450

seq1  CTTATGGTTGTCATTCTAATTAAAACTCTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTTGTCATTCTAATTAAAACTCTCTCTCTCTCTCTCTCTCTCTC  500

seq1  TAACTGAGCATGCCTCCCAACCTGACCATGCCTCCCAACATGTCTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCATGCCTCCCAACCTGACCATGCCTCCCAACATGTCTCCTCT  550

seq1  GACCTCAAGTGCTGTTACCACTTTCCTTGATTTTCTGCACTTAAACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAGTGCTGTTACCACTTTCCTTGATTTTCTGCACTTAAACTCCT  600

seq1  ACAGCAATGTAGTTACTCTGATGTGCTGTGTAAAGATCTGTACTCTC-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAGCAATGTAGTTACTCTGATGTGCTGTGTAAAGATCTGTACTCTCTTT  650

seq1  TAAGAACATGCACAGCGAATGGTTTATTGAATGAGCATTAGGGGAAGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATGCACAGCGAATGGTTTATTGAATGAGCATTAGGGGAAGAGC  700

seq1  TGTGAATTATCTGGCTTTGTAATCCCACAGATATTAACAGAGTGGACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTATCTGGCTTTGTAATCCCACAGATATTAACAGAGTGGACTTA  750

seq1  TGTCATATGATTCATTGAATT-ATTTTGCTCTTTTTGTGGTCTATTTGTC  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCATATGATTCATTGAATTAATTTTGCTCTTTTTGTGGTCTATTTGTC  800

seq1  C-TTTTAAGAAATAATTTTATTGCATGTACTTGTTTGCTATATGTGTGCA  847
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAGAAATAATTTTATTGCATGTACTTGTTTGCTATATGTGTGCA  850

seq1  CGAGCATGTGTGTA-TGTG-TGTACATATGTGTGTATGGCATGAGTGTGT  895
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  CGAGCATGTGTGTATTGTGTTGTACATATGTGTGTATGGCATGAGTGTGT  900

seq1  TGAT-CAGAAGACAGTTTT--CAGGAGTCAG-ATC-TCTCCTTCCCAGGT  940
      |||| ||||||||||||||  |||||||||| ||| ||| ||| ||||||
seq2  TGATCCAGAAGACAGTTTTTCCAGGAGTCAGAATCTTCTTCTTTCCAGGT  950

seq1  ATGGAAC-TTGAGTCATCAGTG---CTAGTAGCCAGCA-TCCTTACTCAC  985
      ||||||| ||||||||||||||    |||||||||||| || ||||||||
seq2  ATGGAACTTTGAGTCATCAGTGTGCTTAGTAGCCAGCATTCTTTACTCAC  1000

seq1  TAAG--CCAACTTA--TTGACCCCT---ATTTTTCTTT---AAAGAGAAT  1025
      | ||  | ||||||  | |||||||    |||||||||   | |||||||
seq2  TTAGGCCAAACTTAATTGGACCCCTTTATTTTTTCTTTTAAAGAGAGAAT  1050

seq1  TG--ATTTAAAAAAT-GTGTAC---AGTGTCACTTAA-TGGATG-CAAC-  1066
      ||   |||||||||| ||||||    ||||| ||||| |||||| |||| 
seq2  TGGATTTTAAAAAATGGTGTACCAGGGTGTCCCTTAATTGGATGCCAACT  1100

seq1  TACT-GCAGCAATA--TCTTGAATTAAAATG-ATA-TTCCCTT--GGTTT  1109
      |||| |||||||||  ||||||  ||||||| ||| |||||||  | |||
seq2  TACTGGCAGCAATATCTCTTGA--TAAAATGAATATTTCCCTTTGGATTT  1148

seq1  TG----TATATGGTTTTCTTTATTCTGGACATA-GGAAGG-TTCTAACTG  1153
      ||    |||  ||||||||| |||||||||| | |||||| |||||||||
seq2  TGTTATTATTGGGTTTTCTTAATTCTGGACACATGGAAGGTTTCTAACTG  1198

seq1  ACAGATTTTACACAG  1168
      || ||||||||||||
seq2  ACCGATTTTACACAG  1213


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