BAC Information

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BAC

Clone NameB6Ng01-346M13
Chromosome4 (Build37)
Map Location 132,693,553 - 132,859,104
singlet/doubletdoublet
Overlap geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
Upstream geneOprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
Downstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M13.bB6Ng01-346M13.g
ACCGA128584GA128585
length1,232461
definitionB6Ng01-346M13.b B6Ng01-346M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,857,890 - 132,859,104)(132,693,553 - 132,694,023)
sequence
gaattccagtctaacaggagtgatggaaaacaaacggaaggaagcgatcc
tgacatccatgagcactgtagtgtgtgcttgccgggattcccggtacacc
acacgctcacagcctaatgaagaggactaggggtgttagtcactgaacag
agtgctcacctaacgtgcacaaaaccctgagcttgagccctagcaccaca
caagccaggaaacagggatggtgatttgtgccttcaagtcccactgtgcg
agaggtaaacaccagaggatcagaagtcaaagcttatccttggtcatacg
cccagcagagctctggaacagaataagcaccgaggcgcaagcactcagat
aacagatgacacttgctgactgacaggagaaaattggcagtgtctctttt
agtagcttcccttctctgagacctcatttttctcatctataaaacaagat
atttgcacctttgaggatctttcagatttaaatatgtgctcccagggaag
gtccagtgtcagcaagggctttgtgtaagtcacatagcccgcccacccca
agactcaaaagcctggaggactttcctgtttagagttcctttcatggtcc
catctggcgagctctatggctccgtgctcagtgctcactgggagttgagg
agtctgatcttgaaagctgcccagatctgaccgaggcttcagccacatcc
ttgcctcacggcctccatctctccccaatcctaggtgtatctgtttgact
tgacttacaagcaacggccatataccttcctcttgcctagaaaatgccac
tccgtgggtaagttctcccttggggaacccatgacggggtgggtggaggc
ttgtgtacttatgtctctctgaggagaagcccactcgttactctgacctg
tgtctacacactccaaaagagaagatctctaccctggccttatcagaagg
atagtcagacgggtcagagctctgtccaaggctatggaagaatgggccct
ttccagtgccctggctcttaagcacctggaggtagctgcccttttccctt
ctcaccctggttcatggattcttccctggtggtctcacagctgagcccaa
cctcttcttcccctcatttccctccccgcacctcagctgtggggcatggg
cagaacagaaagggctggtacctctgtagccagcaaagggccgaccggac
ttttcttatttcccacctgacgctgcctgcct
aaaagggaacaaagcacaagtagatacattgaaggtttggagggaggaaa
ggaagggagacatgatgtaagtatattattattttaaaaaattgttttac
tcccaatcccaaatcagacaagttagaaaattcctttcccttactgtgag
ctgctgctgctgctttttttcttcctccttttcctcctcctcctcttttt
tccaagataggtttttctgtagccccaggtatcctggaactcagagagat
tctattgcaagtgtctcccaagtgctgtgatcaaaggcatgtgccatcac
acctggtttactatgtgcttcttaagaataggacgtaatgttatcctccc
ttcctccttccctccttccctccctctctctctctctctctctctctctc
tctctctctctctctctctctctctcagaaatgaatccagaaccccatat
atgcaaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132857890_132859104
seq2: B6Ng01-346M13.b_45_1276 (reverse)

seq1  AGGCAGGCAG--------TGGAATAAAGAAAAG-CCCGTGCGCCCTCTGC  41
      ||||||||||         ||||  |||||||| || ||  ||||| |||
seq2  AGGCAGGCAGCGTCAGGTGGGAAATAAGAAAAGTCCGGTCGGCCCTTTGC  50

seq1  TGGCTACAGAGGGTACAGCTCCTTTCTG-TCTG-CCATTCCCCACAGCTG  89
      ||||||||||||   |||| |||||||| |||| |||| |||||||||||
seq2  TGGCTACAGAGGTACCAGC-CCTTTCTGTTCTGCCCATGCCCCACAGCTG  99

seq1  AGGT-CGGGGAGGG-AATGAGGGG-AGAAGAGGTTGGGGCTCAGCTGTGA  136
      |||| ||||||||| ||||||||| |||||||||| ||||||||||||||
seq2  AGGTGCGGGGAGGGAAATGAGGGGAAGAAGAGGTT-GGGCTCAGCTGTGA  148

seq1  G-CCA-CAGGGAGAAATCCATGAACCAGGGTGAGAAGGG-AAAGGGCAGC  183
      | ||| ||||||  ||||||||||||||||||||||||| ||||||||||
seq2  GACCACCAGGGAAGAATCCATGAACCAGGGTGAGAAGGGAAAAGGGCAGC  198

seq1  TACCT-CAAGTGCTTAAGAGCCAGGGCACTGG-AAGGGCCCA-TCTTCCA  230
      ||||| || ||||||||||||||||||||||| ||||||||| |||||||
seq2  TACCTCCAGGTGCTTAAGAGCCAGGGCACTGGAAAGGGCCCATTCTTCCA  248

seq1  TAAGCCTTGGACAGAGCTCTGACCCGTCTGACTATCCTTCTGATAAGGCC  280
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGCCTTGGACAGAGCTCTGACCCGTCTGACTATCCTTCTGATAAGGCC  297

seq1  AGGGTAGAGATCTTCTCTTTTGGAGTGTGTAGACACAGGTCAGAGTAACG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGATCTTCTCTTTTGGAGTGTGTAGACACAGGTCAGAGTAACG  347

seq1  AGTGGGCTTCTCCTCAGAGGGACATAAGTACACAAGCCTCCACCCACCCC  380
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGGGCTTCTCCTCAGAGAGACATAAGTACACAAGCCTCCACCCACCCC  397

seq1  GTCATGGGTTCCCCAAGGGAGAACTTACCCACGGAGTGGCATTTTCTAGG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGTTCCCCAAGGGAGAACTTACCCACGGAGTGGCATTTTCTAGG  447

seq1  CAAGAGGAAGGTATATGGCCGTTGCTTGTAAGTCAAGTCAAACAGATACA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAAGGTATATGGCCGTTGCTTGTAAGTCAAGTCAAACAGATACA  497

seq1  CCTAGGATTGGGGAGAGATGGAGGCCGTGAGGCAAGGATGTGGCTGAAGC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATTGGGGAGAGATGGAGGCCGTGAGGCAAGGATGTGGCTGAAGC  547

seq1  CTCGGTCAGATCTGGGCAGCTTTCAAGATCAGACTCCTCAACTCCCAGTG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCAGATCTGGGCAGCTTTCAAGATCAGACTCCTCAACTCCCAGTG  597

seq1  AGCACTGAGCACGGAGCCATAGAGCTCGCCAGATGGGACCATGAAAGGAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGCACGGAGCCATAGAGCTCGCCAGATGGGACCATGAAAGGAA  647

seq1  CTCTAAACAGGAAAGTCCTCCAGGCTTTTGAGTCTTGGGGTGGGCGGGCT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACAGGAAAGTCCTCCAGGCTTTTGAGTCTTGGGGTGGGCGGGCT  697

seq1  ATGTGACTTACACAAAGCCCTTGCTGACACTGGACCTTCCCTGGGAGCAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTACACAAAGCCCTTGCTGACACTGGACCTTCCCTGGGAGCAC  747

seq1  ATATTTAAATCTGAAAGATCCTCAAAGGTGCAAATATCTTGTTTTATAGA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATCTGAAAGATCCTCAAAGGTGCAAATATCTTGTTTTATAGA  797

seq1  TGAGAAAAATGAGGTCTCAGAGAAGGGAAGCTACTAAAAGAGACACTGCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATGAGGTCTCAGAGAAGGGAAGCTACTAAAAGAGACACTGCC  847

seq1  AATTTTCTCCTGTCAGTCAGCAAGTGTCATCTGTTATCTGAGTGCTTGCG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCCTGTCAGTCAGCAAGTGTCATCTGTTATCTGAGTGCTTGCG  897

seq1  CCTCGGTGCTTATTCTGTTCCAGAGCTCTGCTGGGCGTATGACCAAGGAT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGCTTATTCTGTTCCAGAGCTCTGCTGGGCGTATGACCAAGGAT  947

seq1  AAGCTTTGACTTCTGATCCTCTGGTGTTTACCTCTCGCACAGTGGGACTT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGACTTCTGATCCTCTGGTGTTTACCTCTCGCACAGTGGGACTT  997

seq1  GAAGGCACAAATCACCATCCCTGTTTCCTGGCTTGTGTGGTGCTAGGGCT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCACAAATCACCATCCCTGTTTCCTGGCTTGTGTGGTGCTAGGGCT  1047

seq1  CAAGCTCAGGGTTTTGTGCACGTTAGGTGAGCACTCTGTTCAGTGACTAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAGGGTTTTGTGCACGTTAGGTGAGCACTCTGTTCAGTGACTAA  1097

seq1  CACCCCTAGTCCTCTTCATTAGGCTGTGAGCGTGTGGTGTACCGGGAATC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAGTCCTCTTCATTAGGCTGTGAGCGTGTGGTGTACCGGGAATC  1147

seq1  CCGGCAAGCACACACTACAGTGCTCATGGATGTCAGGATCGCTTCCTTCC  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAAGCACACACTACAGTGCTCATGGATGTCAGGATCGCTTCCTTCC  1197

seq1  GTTTGTTTTCCATCACTCCTGTTAGACTGGAATTC  1215
      |||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCCATCACTCCTGTTAGACTGGAATTC  1232

seq1: chr4_132693553_132694023
seq2: B6Ng01-346M13.g_69_535

seq1  GAATTCAAAAGGGAACAAAGCACAAGTAGATACATTGAAGGTTTGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGGAACAAAGCACAAGTAGATACATTGAAGGTTTGGAGGG  50

seq1  AGGAAAGGAAGGGAGACATGATGTAAGTATATTATTATTTTAAAAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAGGGAGACATGATGTAAGTATATTATTATTTTAAAAAATTG  100

seq1  TTTTACTCCCAATCCCAAATCAGACAAGTTAGAAAATTCCTTTCCCTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCCCAATCCCAAATCAGACAAGTTAGAAAATTCCTTTCCCTTAC  150

seq1  TGTGAGCTGCTGCTGCTGCTTTTTTTCTTCCTCCTTTTCCTCCTCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCTGCTGCTGCTTTTTTTCTTCCTCCTTTTCCTCCTCCTCCT  200

seq1  CTTTTTTCCAAGATAGGTTTTTCTGTAGCCCCAGGTATCCTGGAACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCAAGATAGGTTTTTCTGTAGCCCCAGGTATCCTGGAACTCAG  250

seq1  AGAGATTCTATTGCAAGTGTCTCCCAAGTGCTGTGATCAAAGGCATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTATTGCAAGTGTCTCCCAAGTGCTGTGATCAAAGGCATGTGC  300

seq1  CATCACACCTGGTTTACTATGTGCTTCTTAAGAATAGGACGTAATGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACCTGGTTTACTATGTGCTTCTTAAGAATAGGACGTAATGTTAT  350

seq1  CCTCCCTTCCTCCTTCCCTCCTTCCCTCCCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCTTCCCTCCTTCCCTCCCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGAAATGAACCCAGGACC  450
      |||||||||||||||||||||||||||||||| |||||||| |||| |||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAAATGAATCCAGAACC  450

seq1  TCATATATGCTAGGCAAGTGA  471
       |||||||||     ||||||
seq2  CCATATATGC----AAAGTGA  467