BAC Information

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BAC

Clone NameB6Ng01-348B12
Chromosome4 (Build37)
Map Location 151,835,689 - 151,970,784
singlet/doubletdoublet
Overlap geneKcnab2, Nphp4
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, LOC100042028
Downstream geneLOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348B12.bB6Ng01-348B12.g
ACCGA129493GA129494
length1,2131,110
definitionB6Ng01-348B12.b B6Ng01-348B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,969,557 - 151,970,784)(151,835,689 - 151,836,793)
sequence
gaattcagtgccctcttcttgactccgcaagcaccaggcatgcacgtgat
gccagcgaaacactcacatgcttaaaataaattttacacttacaaataaa
tcaattcatttacccttctgaagatgtccttgtctgggatcttgtcacag
caacaaagagagctgttaatacagcgggtttatgtctgacatcccagcag
ggccctctgtgttacagccttaggtgagagcaggcgttggccctgtctgc
tggtgtgcagcagtcttctctcagataaaaccttctgtcttggaggaaag
ctccttaagactggaagtaaataactcaaatagcttcaggaagtccctga
aactgactagatttaccaggctcttccctctccccagtatagatagacag
taaatactgctaagagacatctctgatgagctgagctgcctgcaagaaac
tcagaccaaatgagacaccaggaaaggatactccccagcctgttgagctg
cctgcaggctgtgcagtgtgctccagggctgcatatttgtgagatgtcac
ccatgcttgggtgggcttttggtgatgcagctgtctttgaacccccataa
gtcaccactcacccatattcctgtaagaaacaccaataaaagttatttgt
tcaccaagatgtattttggaggtgttcctactgtggtcagctccccctct
gggggcagcaggaatgtgtctgtccccaggagaatggtcacagagtgtat
acttcctaaaggtcttggatactttactgtttctgtgataaaacacaata
gccaaggcatcttcaagaaagaaggatttacgtggggtgtgcagttgcag
agggatgggagcccacctccatcatagtggagaagcatgacaggaggaag
acaggatgctggtgcagcagctaagagcaagagtagtccaggaggagtct
gacacagtaactgattcgcttgttctcagagaggggaatgagaggaaagt
cttacacagaagctctaccagggctcaaacactttcctggccaagttcaa
atcactctgtaatgataacataatattcatactcagaaagcaaaaaaaac
aaacaactaagtgtgtgagggaaagaaagcaccatccctctctaaggcct
gcttggtcttcaattgccaaggctcctgagtagatgcaggactgcggaca
tgacagaagcatc
gaattccaggacatcttgctgtacttctttctttcaaactaaatttataa
cccctttgtgaaagtgtgtcagagccctccccatttgagggagctgacca
agaacacagagggataacccaggcaagacagagccagccccagtgggagg
ctctgggaagggggcacctaggctggaggcctctcttctgacttcatgaa
agcgctgcctgccacctccatggcccaggactcctcctccaaacccagag
gcttagcggctagcctcacgatgccatctgagctacctacggccttattc
ccaaggatgcagatgttcagcagagcccatttcaaacagagacacagaga
gtgcagcctgccgctgtgggaaagacaagggccacttctgcttcccaggg
gcagagtgtgtaccctggttgccttcgtcttcctacctgtgggcacacct
ggtttcttccgttaacagctcttcctgcagctgttctcagaagaagcagg
gcagggctacctggagcctctttgggggacccaaatctcagtcaaggtgg
gagacattttctgttggggctgggggacacccttcagaagcaaggcctat
ggctgataggggatagatctgtggtagtcgttgtgaagaagtctctggct
ctcctgctcctgtagcttctgcagagcactcctgagtccctcgggagtct
cgtctttcagagaatacacagagacccaaccctgaggagcaggctggcca
tcacagaccgctggacgtggactcggctcgccgttttctcttataaaacc
taagccttgtctttcccactcatctttggggcctaatggctcatgctcca
gaatttctgtcccactcatgccaggaggggggtctctagagaggcagtgc
cctcctgggcctctacacttaccagctcccttggggacagctatgcaacc
tctgaggagtccaggcagcaaccgaaggcctacgtaacttctgagccctg
acttctgctgcagcagagcagcgctcctcgagcggctgtggtgtaactag
gcttgcaatgtcagaagatgaagtcctagatctagttgcatggttccact
gtgccaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_151969557_151970784
seq2: B6Ng01-348B12.b_47_1259 (reverse)

seq1  GATGCTTCTGTTCATGGTCCCCCAGTCCTGGCCTACCTACCTCAGGAGGC  50
      |||||||||| |||||   || ||||||||    | ||| |||||||| |
seq2  GATGCTTCTG-TCATG--TCCGCAGTCCTG---CATCTA-CTCAGGAGCC  43

seq1  TCTGCATTTGGAGCCCCAGGCCAGCCCTTTAGA-AGGGATGGTGCTGTCT  99
      |  ||| ||| || || ||  ||| || ||||| |||||||||||| |||
seq2  TTGGCAATTGAAGACCAAG--CAGGCC-TTAGAGAGGGATGGTGCTTTCT  90

seq1  CTCCCTCACACACTTAGTTGTTTGTTTTTTTTGCTTTCTGAGTATGATTA  149
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCCTCACACACTTAGTTGTTTGTTTTTTTTGCTTTCTGAGTATGAATA  140

seq1  TTATTGTTATCATTTTACAGAGGTGATTTGGAACTTGGCCAGGAAAGTGT  199
      ||| ||||||||  ||||||| ||||||| ||||||||||||||||||||
seq2  TTA-TGTTATCA--TTACAGA-GTGATTT-GAACTTGGCCAGGAAAGTGT  185

seq1  TTGAGCCCTGGTAGAGCCTTCTGTGTAAGGCTTTCCTCTCATTCCCCTCT  249
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTGAGCCCTGGTAGAG-CTTCTGTGTAAGACTTTCCTCTCATTCCCCTCT  234

seq1  CTGAGAACAAGCGAATCAGTTACTGTGTCAGACTCCTCCTGGACTACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAAGCGAATCAGTTACTGTGTCAGACTCCTCCTGGACTACTCT  284

seq1  TGCTCTTAGCTGCTGCACCAGCATCCTGTCTTCCTCCTGTCATGCTTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAGCTGCTGCACCAGCATCCTGTCTTCCTCCTGTCATGCTTCTC  334

seq1  CACTATGATGGAGGTGGGCTCCCATCCCTCTGCAACTGCACACCCCACGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGATGGAGGTGGGCTCCCATCCCTCTGCAACTGCACACCCCACGT  384

seq1  AAATCCTTCTTTCTTGAAGATGCCTTGGCTATTGTGTTTTATCACAGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCTTTCTTGAAGATGCCTTGGCTATTGTGTTTTATCACAGAAA  434

seq1  CAGTAAAGTATCCAAGACCTTTAGGAAGTATACACTCTGTGACCATTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGTATCCAAGACCTTTAGGAAGTATACACTCTGTGACCATTCTC  484

seq1  CTGGGGACAGACACATTCCTGCTGCCCCCAGAGGGGGAGCTGACCACAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACAGACACATTCCTGCTGCCCCCAGAGGGGGAGCTGACCACAGT  534

seq1  AGGAACACCTCCAAAATACATCTTGGTGAACAAATAACTTTTATTGGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCTCCAAAATACATCTTGGTGAACAAATAACTTTTATTGGTGT  584

seq1  TTCTTACAGGAATATGGGTGAGTGGTGACTTATGGGGGTTCAAAGACAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAGGAATATGGGTGAGTGGTGACTTATGGGGGTTCAAAGACAGC  634

seq1  TGCATCACCAAAAGCCCACCCAAGCATGGGTGACATCTCACAAATATGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACCAAAAGCCCACCCAAGCATGGGTGACATCTCACAAATATGCA  684

seq1  GCCCTGGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGCTGGGGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGCTGGGGAGT  734

seq1  ATCCTTTCCTGGTGTCTCATTTGGTCTGAGTTTCTTGCAGGCAGCTCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTGGTGTCTCATTTGGTCTGAGTTTCTTGCAGGCAGCTCAGC  784

seq1  TCATCAGAGATGTCTCTTAGCAGTATTTACTGTCTATCTATACTGGGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGATGTCTCTTAGCAGTATTTACTGTCTATCTATACTGGGGAG  834

seq1  AGGGAAGAGCCTGGTAAATCTAGTCAGTTTCAGGGACTTCCTGAAGCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGCCTGGTAAATCTAGTCAGTTTCAGGGACTTCCTGAAGCTAT  884

seq1  TTGAGTTATTTACTTCCAGTCTTAAGGAGCTTTCCTCCAAGACAGAAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTATTTACTTCCAGTCTTAAGGAGCTTTCCTCCAAGACAGAAGGT  934

seq1  TTTATCTGAGAGAAGACTGCTGCACACCAGCAGACAGGGCCAACGCCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAGAGAAGACTGCTGCACACCAGCAGACAGGGCCAACGCCTGC  984

seq1  TCTCACCTAAGGCTGTAACACAGAGGGCCCTGCTGGGATGTCAGACATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTAAGGCTGTAACACAGAGGGCCCTGCTGGGATGTCAGACATAA  1034

seq1  ACCCGCTGTATTAACAGCTCTCTTTGTTGCTGTGACAAGATCCCAGACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTGTATTAACAGCTCTCTTTGTTGCTGTGACAAGATCCCAGACAA  1084

seq1  GGACATCTTCAGAAGGGTAAATGAATTGATTTATTTGTAAGTGTAAAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTTCAGAAGGGTAAATGAATTGATTTATTTGTAAGTGTAAAATT  1134

seq1  TATTTTAAGCATGTGAGTGTTTCGCTGGCATCACGTGCATGCCTGGTGCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGCATGTGAGTGTTTCGCTGGCATCACGTGCATGCCTGGTGCT  1184

seq1  TGCGGAGTCAAGAAGAGGGCACTGAATTC  1228
      |||||||||||||||||||||||||||||
seq2  TGCGGAGTCAAGAAGAGGGCACTGAATTC  1213

seq1: chr4_151835689_151836793
seq2: B6Ng01-348B12.g_67_1176

seq1  GAATTCCAGGACATCTTGCTGTACTTCTTTCTTTCAAACTAAATTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATCTTGCTGTACTTCTTTCTTTCAAACTAAATTTATAA  50

seq1  CCCCTTTGTGAAAGTGTGTCAGAGCCCTCCCCATTTGAGGGAGCTGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTGAAAGTGTGTCAGAGCCCTCCCCATTTGAGGGAGCTGACCA  100

seq1  AGAACACAGAGGGATAACCCAGGCAAGACAGAGCCAGCCCCAGTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGAGGGATAACCCAGGCAAGACAGAGCCAGCCCCAGTGGGAGG  150

seq1  CTCTGGGAAGGGGGCACCTAGGCTGGAGGCCTCTCTTCTGACTTCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAAGGGGGCACCTAGGCTGGAGGCCTCTCTTCTGACTTCATGAA  200

seq1  AGCGCTGCCTGCCACCTCCATGGCCCAGGACTCCTCCTCCAAACCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGCCTGCCACCTCCATGGCCCAGGACTCCTCCTCCAAACCCAGAG  250

seq1  GCTTAGCGGCTAGCCTCACGATGCCATCTGAGCTACCTACGGCCTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCGGCTAGCCTCACGATGCCATCTGAGCTACCTACGGCCTTATTC  300

seq1  CCAAGGATGCAGATGTTCAGCAGAGCCCATTTCAAACAGAGACACAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGCAGATGTTCAGCAGAGCCCATTTCAAACAGAGACACAGAGA  350

seq1  GTGCAGCCTGCCGCTGTGGGAAAGACAAGGGCCACTTCTGCTTCCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCTGCCGCTGTGGGAAAGACAAGGGCCACTTCTGCTTCCCAGGG  400

seq1  GCAGAGTGTGTACCCTGGTTGCCTTCGTCTTCCTACCTGTGGGCACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGTGTACCCTGGTTGCCTTCGTCTTCCTACCTGTGGGCACACCT  450

seq1  GGTTTCTTCCGTTAACAGCTCTTCCTGCAGCTGTTCTCAGAAGAAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCCGTTAACAGCTCTTCCTGCAGCTGTTCTCAGAAGAAGCAGG  500

seq1  GCAGGGCTACCTGGAGCCTCTTTGGGGGACCCAAATCTCAGTCAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTACCTGGAGCCTCTTTGGGGGACCCAAATCTCAGTCAAGGTGG  550

seq1  GAGACATTTTCTGTTGGGGCTGGGGGACACCCTTCAGAAGCAAGGCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTTCTGTTGGGGCTGGGGGACACCCTTCAGAAGCAAGGCCTAT  600

seq1  GGCTGATAGGGGATAGATCTGTGGTAGTCGTTGTGAAGAAGTCTCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATAGGGGATAGATCTGTGGTAGTCGTTGTGAAGAAGTCTCTGGCT  650

seq1  CTCCTGCTCCTGTAGCTTCTGCAGAGCACTCCTGAGTCCCTCGGGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCCTGTAGCTTCTGCAGAGCACTCCTGAGTCCCTCGGGAGTCT  700

seq1  CGTCTTTCAGAGAATACACAGAGACCCAACCCTGAGGAGCAGGCTGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTCAGAGAATACACAGAGACCCAACCCTGAGGAGCAGGCTGGCCA  750

seq1  TCACAGACCGCTGGACGTGGACTCGGCTCGCCGTTTTCTCTTATAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACCGCTGGACGTGGACTCGGCTCGCCGTTTTCTCTTATAAAACC  800

seq1  TAAGCCTTGTCTTTCCCACTCATCTTTGGGGCCTAATGGCTCATGCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTGTCTTTCCCACTCATCTTTGGGGCCTAATGGCTCATGCTCCA  850

seq1  GAATTTCTGTCCCAC-CATGCCAGGAGGGGGGTCTCTAGAGAGGCAGTG-  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  GAATTTCTGTCCCACTCATGCCAGGAGGGGGGTCTCTAGAGAGGCAGTGC  900

seq1  CCTCCT-GGCCTCTACACTTACCAGCTCCCTTGGGGACAGCTATGCAAAC  947
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCCTGGGCCTCTACACTTACCAGCTCCCTTGGGGACAGCTATGC-AAC  949

seq1  CTCTGAGGAGTCCAGGCAGCAACCGAAGGCCTACGTAAACTTCTGAGCCC  997
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCTGAGGAGTCCAGGCAGCAACCGAAGGCCTACGT-AACTTCTGAGCCC  998

seq1  TGACTTCTGCTGCAGCAGAGCAGCGC-CCCCGAGCCGGCTGTGGTGTAAC  1046
      |||||||||||||||||||||||||| || |||| |||||||||||||||
seq2  TGACTTCTGCTGCAGCAGAGCAGCGCTCCTCGAG-CGGCTGTGGTGTAAC  1047

seq1  TA-GCCTGCCATGTCAG-AGATGGAAAGT-CTAGATCTAG-TGGATGGT-  1091
      || || ||| ||||||| |||||  |||| |||||||||| || ||||| 
seq2  TAGGCTTGCAATGTCAGAAGATG--AAGTCCTAGATCTAGTTGCATGGTT  1095

seq1  -CACTGTGCCAGGTC  1105
       ||||||||||||||
seq2  CCACTGTGCCAGGTC  1110