BAC Information

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BAC

Clone NameB6Ng01-349L19
Chromosome4 (Build37)
Map Location 147,886,119 - 147,887,306
singlet/doubletsinglet
Overlap geneFrap1
Upstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Angptl7
Downstream geneExosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L19.bB6Ng01-349L19.g
ACCGA130641GA130642
length1,201317
definitionB6Ng01-349L19.b B6Ng01-349L19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggacctctggaagagcagtcagtgctcttaaccactgagccat
ctctccagcccaccttctgtttctttctagaaaggtaaaaagtagagact
tggctccaaagtcagttggctgctaccttgagaaagttactttggatttc
tgggggtttttcttcagtctgtaaggcttcccctgactcttaaggatgaa
gtgtgcaatgcaagggaaaactcgttcacatggagtagaaacccgcagtg
gcgagtgctgtgaactcctagcatgggcttcactctgggatggatactcc
acctgcttcatttggctccatgctcacagggacactacgaagtggctatt
atcattatcccctttctcaagtgaggggactatggacccagcaggatgaa
cacctgtctgagctaacagagcaaaacaaggcagggccaggacattttct
gggcaggccaggaccaagaccaccattcagcctagcccatgacctgtgtg
ctacccatggcagagccctgtgcctgtccctgagttcacactcactacag
tgcgttagaaactggctaattccccaaggggacaataaaggcatcctttt
aatttctatctgatacccagggactgttgcattcttactcatgtaggtgc
ttctctgctgccgtccttgtctattataaacaaatcattcccatgattcc
ttgtggtttgacagggtgctttgattaaccatgaatttataaagcactaa
cttaatcagtttaacactgggaccccggaggttcaggaaactccgggtcc
atatatttgatgtggagccttttattaattgtgtaggtcacttacagtgc
tttgccattatcaagaggcaggctctttctgtctgatgtccagcactgtg
cctcattggcctggaacaacaggcttttctttcaccatcttaaacacata
ttgcctgtaaacagactgagggcagcctctctccagatgacacaaacaca
agaatgacatctcagcgttctttgccacgtcttttgtttgcgggaagcag
aaggcacactgtgtgcttccttcagaccagggctgtactctgcttgcaat
attcccaggagctttggggccccctttgaagtctttgaggaaaccaagag
ctcttcaacatcttgagccatgggtgatctgccgcagaattgctcatgct
c
aaggccagcctgggctacatgagaccctacctttaaaaaaagaaaagaag
agccgggtatggtgacgccagcactcaggaggcaggcagaggcaggcgga
tttctgagttcgaggccagcctggtctacaaagtgagttccagggcagcc
agagctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaagaaagg
aaggaaggaaggaaggaaggaaggaagggagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147886119_147887306
seq2: B6Ng01-349L19.b_52_1252

seq1  GAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAT  50

seq1  CTCTCCAGCCCACCTTCTGTTTCTTTCTAGAAAGGTAAAAAGTAGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCACCTTCTGTTTCTTTCTAGAAAGGTAAAAAGTAGAGACT  100

seq1  TGGCTCCAAAGTCAGTTGGCTGCTACCTTGAGAAAGTTACTTTGGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAAAGTCAGTTGGCTGCTACCTTGAGAAAGTTACTTTGGATTTC  150

seq1  TGGGGGTTTTTCTTCAGTCTGTAAGGCTTCCCCTGACTCTTAAGGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTTTTCTTCAGTCTGTAAGGCTTCCCCTGACTCTTAAGGATGAA  200

seq1  GTGTGCAATGCAAGGGAAAACTCGTTCACATGGAGTAGAAACCCGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAATGCAAGGGAAAACTCGTTCACATGGAGTAGAAACCCGCAGTG  250

seq1  GCGAGTGCTGTGAACTCCTAGCATGGGCTTCACTCTGGGATGGATACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTGCTGTGAACTCCTAGCATGGGCTTCACTCTGGGATGGATACTCC  300

seq1  ACCTGCTTCATTTGGCTCCATGCTCACAGGGACACTACGAAGTGGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCATTTGGCTCCATGCTCACAGGGACACTACGAAGTGGCTATT  350

seq1  ATCATTATCCCCTTTCTCAAGTGAGGGGACTATGGACCCAGCAGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCCCCTTTCTCAAGTGAGGGGACTATGGACCCAGCAGGATGAA  400

seq1  CACCTGTCTGAGCTAACAGAGCAAAACAAGGCAGGGCCAGGACATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCTGAGCTAACAGAGCAAAACAAGGCAGGGCCAGGACATTTTCT  450

seq1  GGGCAGGCCAGGACCAAGACCACCATTCAGCCTAGCCCATGACCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCCAGGACCAAGACCACCATTCAGCCTAGCCCATGACCTGTGTG  500

seq1  CTACCCATGGCAGAGCCCTGTGCCTGTCCCTGAGTTCACACTCACTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATGGCAGAGCCCTGTGCCTGTCCCTGAGTTCACACTCACTACAG  550

seq1  TGCGTTAGAAACTGGCTAATTCCCCAAGGGGACAATAAAGGCATCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTAGAAACTGGCTAATTCCCCAAGGGGACAATAAAGGCATCCTTTT  600

seq1  AATTTCTATCTGATACCCAGGGACTGTTGCATTCTTACTCATGTAGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATCTGATACCCAGGGACTGTTGCATTCTTACTCATGTAGGTGC  650

seq1  TTCTCTGCTGCCGTCCTTGTCTATTATAAACAAATCATTCCCATGATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTGCCGTCCTTGTCTATTATAAACAAATCATTCCCATGATTCC  700

seq1  TTGTGGTTTGACAGGGTGCTTTGATTAACCATGAATTTATAAAGCACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTGACAGGGTGCTTTGATTAACCATGAATTTATAAAGCACTAA  750

seq1  CTTAATCAGTTTAACACTGGGACCCCGGAGGTTCAGGAAACTCCGGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGTTTAACACTGGGACCCCGGAGGTTCAGGAAACTCCGGGTCC  800

seq1  ATATATTTGATGTGGAGCCTTTTATTAATTGTGTAGGTCACTTACAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGATGTGGAGCCTTTTATTAATTGTGTAGGTCACTTACAGTGC  850

seq1  TTTGCCATTATCAAGAGGCAGGCTC-TTCTGTCTGATGTCCAGCACTGTG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGCCATTATCAAGAGGCAGGCTCTTTCTGTCTGATGTCCAGCACTGTG  900

seq1  CCTCATTGGCCTGGAACAACAGGC-TTTCTTTCACCATCTTAAACACATA  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCATTGGCCTGGAACAACAGGCTTTTCTTTCACCATCTTAAACACATA  950

seq1  TTGCCTGTAAACAGACTGAGGGCAGCCTCTCTCCAGATGACAACAAAACA  998
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TTGCCTGTAAACAGACTGAGGGCAGCCTCTCTCCAGATGACA--CAAACA  998

seq1  CAAAGAATGACATCTCAGCG-TCTTTGCCACGTC-TTTGTTTGC-GGAAG  1045
      | |||||||||||||||||| ||||||||||||| ||||||||| |||||
seq2  C-AAGAATGACATCTCAGCGTTCTTTGCCACGTCTTTTGTTTGCGGGAAG  1047

seq1  CAGAAAGCACACTGTGTGCT--CCTCAGACCA-GGCTGTACTCTGC-TGC  1091
      ||||| ||||||||||||||  | |||||||| ||||||||||||| |||
seq2  CAGAAGGCACACTGTGTGCTTCCTTCAGACCAGGGCTGTACTCTGCTTGC  1097

seq1  AATATCCCCA-GAGCTT--GGGCCCCCTT--GAGTC--TGAGGGAAACAA  1134
      ||||| |||| ||||||  ||||||||||   ||||  ||||| || |||
seq2  AATATTCCCAGGAGCTTTGGGGCCCCCTTTGAAGTCTTTGAGGAAACCAA  1147

seq1  GAGCTCTTCACACATCTGGTG-CTTGGGTGATCTGCCAGCAG-ATGGCTC  1182
      |||||||||| |||||| | | | ||||||||||||| |||| || ||||
seq2  GAGCTCTTCA-ACATCTTGAGCCATGGGTGATCTGCC-GCAGAATTGCTC  1195

seq1  ATGCTC  1188
      ||||||
seq2  ATGCTC  1201