BAC Information

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BAC

Clone NameB6Ng01-350D22
Chromosome4 (Build37)
Map Location 154,567,861 - 154,763,845
singlet/doubletdoublet
Overlap geneSki, 2610002J02Rik, Prkcz, Gabrd
Upstream geneMegf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1
Downstream gene2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350D22.bB6Ng01-350D22.g
ACCGA130976GA130977
length1,1851,125
definitionB6Ng01-350D22.b B6Ng01-350D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,567,861 - 154,569,066)(154,762,718 - 154,763,845)
sequence
gaattcaacaaaacccagctaagtgtgtaaaggcatcatggaggtcagga
atggtcaataggcccagggcttacagtgtccaaaagttgtccatccctac
ccagaaaacaggaaactgctcaagttcacaaggtcttgttcctctggagg
gtctccgtggtaatgggaggagcactactaaacccacactcagatccacc
taaaataaaatttttgaaacccaaaccagaaagaccccaataccttcaag
gaactgcatcccaaaatgatgtatagaagaaagagatattcttcatgcaa
ataggtaaatttcaaaatactagcatctaagaagcaggagattctaatat
ttaatgaggaaaatggtccattgtctgaaaaagaccaaagtcagcagagt
gactgataggcagacagtactgaaacgtgcttccagctgaatcccgtctg
tttaaatgccagtgagtgactacgagtaaatccccaaaaaatcaaacttc
tggagatgaaattagcagtagagaatggcagaaaaggagacctgagattc
tgtacatatagcagcagaacactcaaccaacagaggaggctccaagaaga
caaggattgctcccatacagcccaaagcacaagtaactgagccactaaaa
ggacagccaagtgctagtacacagaaaataaaatctgttttttggtttgt
ttgtttgtttttttttttagttttttttgtgttttatgttttttaaaaaa
aggatccaaaaaactttccagacttaacctatcttataaatcccaaacac
acagcctggagagaagtcacggtggagcgagtcatactcggtgctcctct
gccggctcagagagggctgaaggaggtggtaggtacacggggccagagga
ggagagctgtcttctggaaacagataaggcaaaagactcaagcagacgac
tctgcaggttctcctgtcacacagtccacacgctaaaggcacagacgaag
gcctggaacacatttcaaagggttctgggatcagacaaaatatgttattc
ttgaccacacggatcagttagccattaagccacaggatcactgatctcaa
tatctggaaacttaatccacacgctctagtagccaccattgaagcatcga
gaccttggtattccaacagactgaggagaacagcg
gaattcttgcttctctactggctagaagctccaactggattcccaagtgt
gtgagttcctctcccttctcatgtccccacgatttcccctgccttcccgt
tctacctggtaggcctactgggaacaacagggccagcacaggttcccagc
tgctcctgggtcaggctaaccccagatgtgcatggctacttgaggggctg
ggctgggagggtggggcaggctggggccctcccgagaagacagagctcga
gtctctgggcatctctcacttctttcttctcagccatatccaggggatct
tggctgacaggaaggctatgtggtcttgtcagggttctctgctttggaga
aaagccccggggattgggactccagttgccaagcctttaattcccttcca
taaatacatagggggaggggactaaggagacacctcaagggagtctggga
gctctgcctctattctggggtggacacagggcaacattcctcaggagcag
acacgaaggtgtctgaaactgggcagaaaggtagcagaagtgtggagagc
ctcttcattttcctgtgtcttgcctgaagggtccagaggggccggcgcct
gctcctccttggcacctgtgctgagggcaatgctccacccgcaggccctg
atgctctgcctgctgtgaccaattggccttgtgttcccagggcaatgaat
gacattggggactacgtgggctccaacctggaaatatcctggctccccaa
cctggatggcttaatggagggctatgcccgaaacttccgaccaggcattg
gaggtacaggcagatgatggtgtgggagcagaaacagatccaaccctgga
tctgctgtgggtgtgggctcttctgggctccggtttggcactccaggggt
tcactggatttcaagccccaggcatcccagatgaaagaggtatctcccca
ggcactgaggcaaatatgtaacggctccaagttcccttgaaaaggccgtg
gatatattctgtccacttgtctgggcttggtctagaggtagctggatgct
ggaactggggtttctactaccgacaacatagcagacccctcttcctacag
ggactctgtgaatgtggcgccttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154567861_154569066
seq2: B6Ng01-350D22.b_45_1229

seq1  GAATTCAACAAAACCCAGCTAAGTGTGTAAAGGCATCATGGAGGTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAACCCAGCTAAGTGTGTAAAGGCATCATGGAGGTCAGGA  50

seq1  ATGGTCAATAGGCCCAGGGCTTACAGTGTCCAAAAGTTGTCCATCCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAATAGGCCCAGGGCTTACAGTGTCCAAAAGTTGTCCATCCCTAC  100

seq1  CCAGAAAACAGGAAACTGCTCAAGTTCACAAGGTCTTGTTCCTCTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACAGGAAACTGCTCAAGTTCACAAGGTCTTGTTCCTCTGGAGG  150

seq1  GTCTCCGTGGTAATGGGAGGAGCACTACTAAACCCACACTCAGATCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGTGGTAATGGGAGGAGCACTACTAAACCCACACTCAGATCCACC  200

seq1  TAAAATAAAATTTTTGAAACCCAAACCAGAAAGACCCCAATACCTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATTTTTGAAACCCAAACCAGAAAGACCCCAATACCTTCAAG  250

seq1  GAACTGCATCCCAAAATGATGTATAGAAGAAAGAGATATTCTTCATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATCCCAAAATGATGTATAGAAGAAAGAGATATTCTTCATGCAA  300

seq1  ATAGGTAAATTTCAAAATACTAGCATCTAAGAAGCAGGAGATTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAATTTCAAAATACTAGCATCTAAGAAGCAGGAGATTCTAATAT  350

seq1  TTAATGAGGAAAATGGTCCATTGTCTGAAAAAGACCAAAGTCAGCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGGAAAATGGTCCATTGTCTGAAAAAGACCAAAGTCAGCAGAGT  400

seq1  GACTGATAGGCAGACAGTACTGAAACGTGCTTCCAGCTGAATCCCGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATAGGCAGACAGTACTGAAACGTGCTTCCAGCTGAATCCCGTCTG  450

seq1  TTTAAATGCCAGTGAGTGACTACGAGTAAATCCCCAAAAAATCAAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCCAGTGAGTGACTACGAGTAAATCCCCAAAAAATCAAACTTC  500

seq1  TGGAGATGAAATTAGCAGTAGAGAATGGCAGAAAAGGAGACCTGAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGAAATTAGCAGTAGAGAATGGCAGAAAAGGAGACCTGAGATTC  550

seq1  TGTACATATAGCAGCAGAACACTCAACCAACAGAGGAGGCTCCAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATAGCAGCAGAACACTCAACCAACAGAGGAGGCTCCAAGAAGA  600

seq1  CAAGGATTGCTCCCATACAGCCCAAAGCACAAGTAACTGAGCCACTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTGCTCCCATACAGCCCAAAGCACAAGTAACTGAGCCACTAAAA  650

seq1  GGACAGCCAAGTGCTAGTACACAGAAAATAAAATCTGTTTTTTGGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAAGTGCTAGTACACAGAAAATAAAATCTGTTTTTTGGTTTGT  700

seq1  TTGTTTGTTTTTTTTTTTAGTTTTTTTTGTGTTTTATGTTTTTTAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTTTTTAGTTTTTTTTGTGTTTTATGTTTTTTAAAAAA  750

seq1  AGGATCCAAAAAACTTTCCAGACTTAACCTATCTTATAAATCCCAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAAAAAACTTTCCAGACTTAACCTATCTTATAAATCCCAAACAC  800

seq1  ACAGCCTGGAGAGAAGTCACGGTGGAGCGAGTCATACTCGGTGCTCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGAGAGAAGTCACGGTGGAGCGAGTCATACTCGGTGCTCCTCT  850

seq1  GCCGGCTCAGAGAGGGCTGAAGGAGGTGGTAGGTACACGGGGCCAGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCTCAGAGAGGGCTGAAGGAGGTGGTAGGTACACGGGGCCAGAGGA  900

seq1  GGAGAGCTGTC-TCTGGAAAACAGATAAGCAAAAAGACCAAGGCAGACGA  949
      ||||||||||| ||||| |||||||||||  |||||||  | ||||||||
seq2  GGAGAGCTGTCTTCTGG-AAACAGATAAGGCAAAAGACTCAAGCAGACGA  949

seq1  CTCTGCAGGTTCTCCTGTCCACACAGTCCACACGCTAAAGGCACAAGACG  999
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTCTGCAGGTTCTCCTGT-CACACAGTCCACACGCTAAAGGCAC-AGACG  997

seq1  AAGGCCTGGAACACA-TTCAAAGGGGTCT-GGATCAGACAAAATATGTTA  1047
      ||||||||||||||| ||||||||| ||| ||||||||||||||||||||
seq2  AAGGCCTGGAACACATTTCAAAGGGTTCTGGGATCAGACAAAATATGTTA  1047

seq1  T--CTGACCACAGGGAATCCAGTTAGCAATT-AGCAACAGGTATCACTGG  1094
      |   |||||||| |||   |||||||| ||| ||| ||||| ||||||| 
seq2  TTCTTGACCACACGGA--TCAGTTAGCCATTAAGCCACAGG-ATCACTG-  1093

seq1  AAATCTCAAATATCTGGAAAC-TAAACCACACGCTCTTAAGTAGCCCACA  1143
        ||||| ||||||||||||| ||| |||||||||||  ||||| |||| 
seq2  --ATCTC-AATATCTGGAAACTTAATCCACACGCTCT--AGTAG-CCACC  1137

seq1  CATGAAAGAGGCAACCAGAAGAGCTCTTGTGTAGTGCCCCAAAACAAGAC  1193
        ||||    ||| |     |||  |||| ||| |   ||||    ||||
seq2  ATTGAA----GCATC-----GAGACCTTG-GTATT---CCAA---CAGAC  1171

seq1  TGAGGAG-ACAGCG  1206
      ||||||| ||||||
seq2  TGAGGAGAACAGCG  1185

seq1: chr4_154762718_154763845
seq2: B6Ng01-350D22.g_66_1190 (reverse)

seq1  GCAA-GCGCCACATTCACAGGAGCACCTGTAAGAAAGAGGGGTCTGCTAA  49
      |||| |||||||||||||| |||  ||||| || |||||||||||||| |
seq2  GCAAGGCGCCACATTCACA-GAGTCCCTGT-AGGAAGAGGGGTCTGCT-A  47

seq1  TGTTGTC-GTAGTAGAAACCCCAG-TCCAGCACCCAGCTACCCTTCTAGG  97
      ||||||| |||||||||||||||| ||||||| |||||||||  ||||| 
seq2  TGTTGTCGGTAGTAGAAACCCCAGTTCCAGCATCCAGCTACC--TCTAGA  95

seq1  CC-AGCCCAGACAGGTGGGACAGAATAATATCCACGGCCTTTTC-AGGGA  145
      || |||||||||| || ||||||||| ||||||||||||||||| |||||
seq2  CCAAGCCCAGACAAGT-GGACAGAAT-ATATCCACGGCCTTTTCAAGGGA  143

seq1  ACTTGGAGCCGTTACATATTTGCCTCAGTGCCTGGGGAGATACCTCTTTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGCCGTTACATATTTGCCTCAGTGCCTGGGGAGATACCTCTTTC  193

seq1  ATCTGGGATGCCTGGGGCTTGAAATCCAGTGAACCCCTGGAGTTGCCAAA  245
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTGGGATGCCTGGGGCTTGAAATCCAGTGAACCCCTGGAG-TGCCAAA  242

seq1  CCGGAGCCCAGAAGAGCCCACACCCACAGCAGATCCAGGGTTGGATCTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCCCAGAAGAGCCCACACCCACAGCAGATCCAGGGTTGGATCTGT  292

seq1  TTCTGCTCCCACACCATCATCTGCCTGTACCTCCAATGCCTGGTCGGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCCACACCATCATCTGCCTGTACCTCCAATGCCTGGTCGGAAG  342

seq1  TTTCGGGCATAGCCCTCCATTAAGCCATCCAGGTTGGGGAGCCAGGATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGCATAGCCCTCCATTAAGCCATCCAGGTTGGGGAGCCAGGATAT  392

seq1  TTCCAGGTTGGAGCCCACGTAGTCCCCAATGTCATTCATTGCCCTGGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTTGGAGCCCACGTAGTCCCCAATGTCATTCATTGCCCTGGGAA  442

seq1  CACAAGGCCAATTGGTCACAGCAGGCAGAGCATCAGGGCCTGCGGGTGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCCAATTGGTCACAGCAGGCAGAGCATCAGGGCCTGCGGGTGGA  492

seq1  GCATTGCCCTCAGCACAGGTGCCAAGGAGGAGCAGGCGCCGGCCCCTCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCCTCAGCACAGGTGCCAAGGAGGAGCAGGCGCCGGCCCCTCTG  542

seq1  GACCCTTCAGGCAAGACACAGGAAAATGAAGAGGCTCTCCACACTTCTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCAGGCAAGACACAGGAAAATGAAGAGGCTCTCCACACTTCTGC  592

seq1  TACCTTTCTGCCCAGTTTCAGACACCTTCGTGTCTGCTCCTGAGGAATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTGCCCAGTTTCAGACACCTTCGTGTCTGCTCCTGAGGAATGT  642

seq1  TGCCCTGTGTCCACCCCAGAATAGAGGCAGAGCTCCCAGACTCCCTTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGTCCACCCCAGAATAGAGGCAGAGCTCCCAGACTCCCTTGAG  692

seq1  GTGTCTCCTTAGTCCCCTCCCCCTATGTATTTATGGAAGGGAATTAAAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCTTAGTCCCCTCCCCCTATGTATTTATGGAAGGGAATTAAAGG  742

seq1  CTTGGCAACTGGAGTCCCAATCCCCGGGGCTTTTCTCCAAAGCAGAGAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAACTGGAGTCCCAATCCCCGGGGCTTTTCTCCAAAGCAGAGAAC  792

seq1  CCTGACAAGACCACATAGCCTTCCTGTCAGCCAAGATCCCCTGGATATGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAGACCACATAGCCTTCCTGTCAGCCAAGATCCCCTGGATATGG  842

seq1  CTGAGAAGAAAGAAGTGAGAGATGCCCAGAGACTCGAGCTCTGTCTTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAAAGAAGTGAGAGATGCCCAGAGACTCGAGCTCTGTCTTCTC  892

seq1  GGGAGGGCCCCAGCCTGCCCCACCCTCCCAGCCCAGCCCCTCAAGTAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCCCCAGCCTGCCCCACCCTCCCAGCCCAGCCCCTCAAGTAGCC  942

seq1  ATGCACATCTGGGGTTAGCCTGACCCAGGAGCAGCTGGGAACCTGTGCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATCTGGGGTTAGCCTGACCCAGGAGCAGCTGGGAACCTGTGCTG  992

seq1  GCCCTGTTGTTCCCAGTAGGCCTACCAGGTAGAACGGGAAGGCAGGGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGTTCCCAGTAGGCCTACCAGGTAGAACGGGAAGGCAGGGGAA  1042

seq1  ATCGTGGGGACATGAGAAGGGAGAGGAACTCACACACTTGGGAATCCAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGGGGACATGAGAAGGGAGAGGAACTCACACACTTGGGAATCCAGT  1092

seq1  TGGAGCTTCTAGCCAGTAGAGAAGCAAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  TGGAGCTTCTAGCCAGTAGAGAAGCAAGAATTC  1125