CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGATC
TAGGAATTGAACTTAGGGTCTTATGCTCAGGTGGCAAGAAGCACTGTACC
AACTGAGACATGCACTCAACCCCTAGTTGCTCTTGAAAGGTGCTAATCCC
ACCATATTGCATCTGCTGAAAACTTGTAGTTTCCTGTTATCCATACAATT
AAGTCACACATTGCCCAGACATTGTCTCTTGCTTTCTCGCCTGTCTTGCT
GAGCTGCCCATTTCCTCTATATCTATACCACCTCTTGTCTGAGTTCCACG
TGTGCTATGTTTTTCCCTTATTTTTTCTCCCCCCTTTTACCATCCTATGC
CCAACAAAATACGTCTTCTAAATCTGCTCACTTCCAGCCAAACTATTCCC
TGGAGAACATGAACCTAAGAAGACCAATAATCTTTTAAATTTTCTGGAGA
GAAGGAAAGGTTGTGTACACTTAAGTATCACAAAACATTGAAAGTACAAG
AAACAGCCCAGAGACAGAGTTCCACGATGAGTTGCATTAGTGACTTCCAG
GTAGTGAATCTCTGCAGATACCCCAGTTAACCTGAAGTTGAATAATGCAA
ACACATAGGATGGAAAGTGAGCCTGAAGACATCCCAAAATGTTTAAGAGT
CTGTTTCCTACTTCTACTCTAATCAAATAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGCTATCTATTCAGTAACAT
TCAAATTTACTTTTAGTAGAGCCGGTGAAACTAATTAGGCATTACAAAGA
ACAGAGCAGGAATAGCTTGGGGCTGGTCTGTAGAGTGTTTACTTGGGACA
ATAGCCAGTCTTACCCAGACAAGTGAATTCACAATGGCCTAGCAAATAGG
TGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAAGTTTCTTCA
CTAGGCCCAAAGGAACAGCATAATCAGGCATTTACTAAGAACCCCTGGTG
GCGGGCTTAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGCA
GCAGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTG
TCACTGTAACTCGGTGGATGTATCTCACCTGGTTTCTTGTTGCTCTCCTG
TATAAAAAGTATGATGCTTAACTTGAAAAATTACATTCAGATTCTACACA
ATCTCTCGTGTGATTCTGTCTGTCATTCATTCGCCCACTCCTAGTCCACC
TGCAACCAGAGACCCGTTCTACGCAGACAGGGAACAAAAAGGGTCTGCGG
CACGATAGAAAGACATAAATGGAAAAAAAAAA

Query= MSMg01no045_a16.b1 MSMg01no045_a16.b1 CHROMAT_FILE:
MSMg01no045_a16.b1 PHD_FILE: MSMg01no045_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:53 2005
         (639 letters)



>mm_chr4_22076529_22077570
          Length = 1042

 Score = 1048 bits (542), Expect = 0.0
 Identities = 610/638 (95%), Gaps = 13/638 (2%)
 Strand = Plus / Minus

                                                                        
Query: 6    gatctaggaattgaacttaggg-tcttatgctcaggtggcaagaagcactgtaccaactg 64
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gatctaggaattgaactt-gggttcttatgctcaggtggcaagaagcactgtaccaactg 984

                                                                        
Query: 65   agacatgcactcaacccctagttgctcttgaaaggtgctaatcccaccatattgcatctg 124
            |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 983  agacatgcactcaacctctagttgcccttgaaaagtgctaatcccaccatattgcatctg 924

                                                                        
Query: 125  ctgaaaacttgtagtttcctgttatccatacaattaagtcacacattgcccagacattgt 184
            |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 923  ctgaaaacttgtagtttcctgttatccatacaattaagtcgcacattgtccagacattgt 864

                                                                        
Query: 185  ctcttgctttctcgcctgtcttgctgagctgcccatttcctctatatctataccacctct 244
            |||||||||||||| ||||||        |||||||||||||| | ||||||||||||||
Sbjct: 863  ctcttgctttctcgtctgtct--------tgcccatttcctctgtgtctataccacctct 812

                                                                        
Query: 245  tgtctgagttccacgtgtgctatgtttttcccttattttttctccccccttttaccatcc 304
             |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 811  cgtctgagttccatgtgtgctatgtttttcccttattttttcttcccccttttaccatcc 752

                                                                        
Query: 305  tatgcccaacaaaatacgtcttctaaatctgctcacttccagccaaactattccctggag 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tatgcccaacaaaatacgtcttctaaatctgctcacttccagccaaactattccctggag 692

                                                                        
Query: 365  aacatgaacctaagaagaccaataatcttttaaattttctggagagaaggaaaggttgtg 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  aacatgaacctaagaagaccaataatcttttaaattttctggagagaaggaaaggttgtg 632

                                                                        
Query: 425  tacacttaagtatcacaaaacattgaaagtacaagaaacagcccagagacagagttccac 484
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 631  tacacttaagtatcacaaaacattggaagtacaagaaacagcccagagacagagtaccac 572

                                                                        
Query: 485  gatgagttgcattagtgacttccaggtagtgaatctctgcagataccccagttaacctga 544
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  gatgaggtgcattagtgacttccaggtagtgaatctctgcagataccccagttaacctga 512

                                                                        
Query: 545  agttgaataatgcaaacacataggatggaaagt-gagcctgaagacatcccaaaatgttt 603
            ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 511  agttgaatagtgcaaacacataggatggaaagtcgagcctgaagacatcccaaaatgttt 452

                                                  
Query: 604  aa--gagtctgtttcctacttctactctaatcaaatat 639
            ||  ||||||||||||||||||||||||||||||||||
Sbjct: 451  aaaagagtctgtttcctacttctactctaatcaaatat 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1042
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1032
Effective search space:   649128
Effective search space used:   649128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)