BAC Information

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BAC

Clone NameMSMg01-045F02
Chromosome4 (Build37)
Map Location 53,272,635 - 53,272,876
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik
Downstream geneAI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045F02.T7 (MSMg01no045_f02.b1)MSMg01-045F02.TJ (MSMg01no045_f02.g1)
ACCAG275981AG275982
length803726
length of high quality
(start - end)
241 (106 - 346)296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no045_f02.b1 PHD_FILE: MSMg01no045_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:15 2005CHROMAT_FILE: MSMg01no045_f02.g1 PHD_FILE: MSMg01no045_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTTTTTTTTNNNTNNNNTTTTTTTTNTTTTGTTTGTNTTTTTCTTAT
NNCCCCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAA
TACGCGGAATTCTCTGACTCTTCGCCTATCTAACCTATGAAAAATGTTCC
AGCTTCCCTTTTTGCTAAGTCCCAGACACAGGACTCCATTAATCAGACTC
CCTTAAACAGCTATTAGGATTTTTTTTGGAGGTTTATGATATCATAAAGG
GGTTCCATGAAACCTATTCTGGCAATGATGCTCATGGGGCACACATTCCT
ACAGTACCACGACAGGGACATTAGGGATTGTCACCAGACCCTGTGTCCAA
GCATATAGTTGGTGACTTTGCCTGTCTGTTCTGTCTCCACCAGGTATCTC
TGCAGTGTGCTTACGGTTTATTCCTGCACGCTAATCCTTTAGTACTTTCT
GTGGTCATTTTATGACTCTTTCTCCCACCCCTTAATAAATCTCCTTTCTG
TGTTCTATTTTAAAGAGTTTCTGCCTGTCCCCTTATTTTGTGACTTATGG
ACCCCTTCCTCCCCAGTACATTTTATCCTTTTTTTTTATTCCGCGTTCCT
CTTGAGCAGCCTCTGTATTTTTCTCTGGTTCCTCTGGCCCCTGGTTATTT
TTCCTCTCTTTTTCTCCTTAACTTTTGCATTCTGCCCCTTTTACTTTGCT
ACATTTCCTTCTTATCCCGTACCCTTATAACACACATTACTACCCACCAC
GATTTTGCTATTTTCATCGCCTCCCCTATTGACTGTCCCCAATTTGGTTC
CTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGTACACAAATAGCCATACAATGG
AACATATATATCCTATAGCCAACAGGCCTGATCACCAGGAACCAGGCTGT
TAAAACTTTAAATTCCAGGTTTTAAGTGACCATGTTAGCTCAGCATTCAC
TAATGTGAATGAACCTCAATGGGTCTCAAGTTCTAAGTCCAAGATAAAGG
AGGCCCTGGGAGACTCAGAAGCCCAAGTCATTGAATTTAGAAAAAGGGAC
CTTAAAACCTACAAAGTGGAAAGGCTTTGCCTGCAGTCAGAGGGCTCAGG
ATGCTTTTTGTTCCTCCACCATAGAGCTTAGGATTTCCTCTGCTCTACTA
TTAGGGCTCCTTTTATCCCCCCCCTTGCTGGTGTTACAACCTGGTTGCCA
GCTCATTTTGTCCTTTGTTTTCCTGTTTTTTGCGTCTCGTGTCTCTTGAT
TCTTTTGTATTTTGTTTTAACTATAATACCCGTAATTTTTTATCGTCTCC
TATTTTTTCTTCATATTATATTTTACATCTTCTATTCTTAATGTTATCTA
TCTTCTTCTTTTCTTATTTTTTACTTGTCTTTTTATCATCTTTAATGTTA
TAATACCTTTTTTTTTTTTTTTTACCTTAATAATATTATTATATATATTT
TTTTTTTTACTTGTAACATTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_f02.b1 MSMg01no045_f02.b1 CHROMAT_FILE:
MSMg01no045_f02.b1 PHD_FILE: MSMg01no045_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
         (241 letters)



>mm_chr4_53272434_53273076
          Length = 643

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattctctgactcttcgcc-tatctaacctatgaaaaatgttccagcttccctttttgc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattctctgactcttcgccatatctaacctatgaaaaatgttccagcttccctttttgc 384

                                                                       
Query: 61  taagtcccagacacaggactccattaatcagactcccttaaacagctattagga-ttttt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 taagtcccagacacaggactccattaatcagactcccttaaacagctattaggatttttt 324

                                                                       
Query: 120 tttggaggtttatgatatcataaaggggttccatgaaacctattctggcaatgatgctca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttggaggtttatgatatcataaaggggttccatgaaacctattctggcaatgatgctca 264

                                                                       
Query: 180 tggggcacacattcctacagtaccacgacagggacattagggattgtcaccagaccctgt 239
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 tggggtacacattcctacagtaccaggacagggacattagggattgtcaccagaccctgt 204

             
Query: 240 gt 241
           ||
Sbjct: 203 gt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 643
Length adjustment: 9
Effective length of query: 232
Effective length of database: 634
Effective search space:   147088
Effective search space used:   147088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)