Query= MSMg01no045_l24.b1 MSMg01no045_l24.b1 CHROMAT_FILE:
MSMg01no045_l24.b1 PHD_FILE: MSMg01no045_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:47 2005
(583 letters)
>mm_chr4_151735093_151736075
Length = 983
Score = 1098 bits (568), Expect = 0.0
Identities = 577/580 (99%), Gaps = 3/580 (0%)
Strand = Plus / Plus
Query: 6 gaattcccttaggactgctta-ttgagaatt-attctgcgctaagaacctcatgcacatc 63
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttaggactg-ttaattgagaatttattctgcgctaagaacctcatgcacatc 263
Query: 64 gcattcctactgggaactgaacccaggaggcctcccattgagctctaattccatcctcca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcattcctactgggaactgaacccaggaggcctcccattgagctctaattccatcctcca 323
Query: 124 cctcttaattgactttcaagagttattttggggttgcttgggaatggaacccagggccta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctcttaattgactttcaagagttattttggggttgcttgggaatggaacccagggccta 383
Query: 184 tataccaggcaagctctcaccagaattcctcttcagctggagtatggggctcaggaggac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataccaggcaagctctcaccagaattcctcttcagctggagtatggggctcaggaggac 443
Query: 244 acagtagcttgcctgagaccatgccacagcagacctttccacttggatttgggtccctga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagtagcttgcctgagaccatgccacagcagacctttccacttggatttgggtccctga 503
Query: 304 gtcaccctgggcatggtgtccctaggctttgacagagtgatgaccccacagtctggagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcaccctgggcatggtgtccctaggctttgacagagtgatgaccccacagtctggagtt 563
Query: 364 tcagtttatgaaggcaggggacaacattctctcctcatcccttgactacggacactgtag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcagtttatgaaggcaggggacaacattctctcctcatcccttgactacggacactgtag 623
Query: 424 gcagctgaaggtcccatgtgtggacttgctctgtctcccagtgctgggtatcctatccca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcagctgaaggtcccatgtgtggacttgctctgtctcccagtgctgggtatcctatccca 683
Query: 484 taggttctgggctgtcctgcagcttccctgacttgtgtatgcatctgggctcctgccgtg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taggttctgggctgtcctgcagcttccctgacttgtgtatgcatctgggctcctgccgtg 743
Query: 544 tgtgggcttcgcatgtgtgccagtgtatctatgtccttgg 583
||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtgggcttcgcatgtgtgccagtgtatctatgtccttgg 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_l24.g1 MSMg01no045_l24.g1 CHROMAT_FILE:
MSMg01no045_l24.g1 PHD_FILE: MSMg01no045_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:47 2005
(582 letters)
>mm_chr4_151878498_151879481
Length = 984
Score = 1077 bits (557), Expect = 0.0
Identities = 576/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Minus
Query: 1 ttggggcagagcaagcaggctccacccaacagcacctccactccgtgatagatggcctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttggggcagagcaagcaggctccacccaacagcacctccactccgtgatagatggcctac 724
Query: 61 gagccttggcctaggccagccacacccacggcagctgggctccacaagcgctgtgctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gagccttggcctaggccagccacacccacggcagctgggctccacaagcgctgtgctcag 664
Query: 121 aggtgtgtgcccctgaagaacaccagtgtttaggcttctgtgtgtgttattagcttgcgg 180
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 663 aggtgtgtgcccctgaagaaccccagtgtttaggctcctgtgtgtgttattagcctgcgg 604
Query: 181 ctgtccatagtcaccgcaggaactgagtcactgcaagctcacacccaaggaacctgccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgtccatagtcaccgcaggaactgagtcactgcaagctcacacccaaggaacctgccag 544
Query: 241 tcacatacaggtcttcttcccactcaagaccctactgtgtaggtgcccagactcaaacag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttacatacaggtcttcttcccactcaagaccctactgtgtaggtgcccagactcaaacag 484
Query: 301 aaatgttcctagcaggttaataaaggttcatgcatccatccggacagacagatgcatcac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaatgttcctagcaggttaataaaggttcatgcatccatccggacagacagatgcatcat 424
Query: 361 ggtaccttcccactgagggacatgacacagaagagcgaataaaggaaccaactgcatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggtaccttcccactgagggacatgacacagaagagcgaataaaggaaccaactgcatatg 364
Query: 421 accagcaccacagagccatgggcaagagaaaccagcagaggagagaagcatgtttcagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 accagcaccacagagccatgggcaagagaaaccagcagaggagagaagcatgtttcagag 304
Query: 481 aagtagaggtgaaggcccgaaaaccaacactgtccagaggttc--atctaagggcaacag 538
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 aagtagaggtgaaggcccgaaaaccaacactgtccagaggttcatatctaagggcaacag 244
Query: 539 aatagaatcgggaaaacagatgtggtgacaagaaaagctgggg 581
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatagaatcgggaaaacagatgtggtgacaagaaaagctgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
