BAC Information

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BAC

Clone NameMSMg01-045P02
Chromosome4 (Build37)
Map Location 47,911,348 - 47,911,591
singlet/doubletsinglet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045P02.T7 (MSMg01no045_p02.b1)MSMg01-045P02.TJ (MSMg01no045_p02.g1)
ACCAG276444AG276445
length771771
length of high quality
(start - end)
372 (105 - 476)244 (132 - 375)
definitionCHROMAT_FILE: MSMg01no045_p02.b1 PHD_FILE: MSMg01no045_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:01 2005CHROMAT_FILE: MSMg01no045_p02.g1 PHD_FILE: MSMg01no045_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTGGGGNTNNNNTGNNTTTTTTTTTTTTTGTTTTTGTTTTTGATAT
TANCNCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAG
AATCCGCGGAATTCTATCAGACCTTTCAAGAAGACCTAATACCAATATTC
TTCAAACTATTCCACAAAATAGCAACAGAAGGTACACTACCAAATTCATT
CTATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGACCTAACAA
AGAAAGAGAACTTCAGACCAATCTCCCTTATAAACATTGATGCAAAATTA
CTCAATAAAATTCTTGCCAACCAAATCAAAGAGCACATCAAAATGATTAT
TCACCATGATCAAGTAGGCTTCATCCAAGGGATGCAGGGATGGTTCAATA
TACAGAAATCCATCAATGTAATCCACTACATAAACAAACTCAAAGGGAAA
AAAAAACATGATCATCTCGTTAGACGCCCACAAAGCGATTGACAAAATTC
GGCATCCCTTCATGTTAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCA
TACCTAAACATAGTACAAACTTTATATTGAAAACCAGTAGCCAACATCTA
ACTAAATGGAGGTAAAGTTGAAGCAATCCCAGTAAAATTCGAGACTATTA
CCAGTTTGCCCAACTCTCTCCCCTATCTATTCCATAATTGGAACCCATAG
GCTCTATCTTGGACAATTTCGCCTCCCAATCGGAGGTTCACAGGGGATAA
AAATTTGCAAAGTGAATAATC
GGCGGGGGNGGGGGGGGGGCGGGGCGCGCNNNNNTCCCCNCCCCTTACCT
CTNATNACCTATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAATACAAGGTCTTGT
AAGTATAGGTGATCTTCAGAGGTGATACTGGACAAGTAGAGGACAGATAG
CCACTGAAGAGCTTAAACACAGTGCAAAGATGCTGCCTATCCGGGCCAGG
CAGAGGAGAATCCGGAAAAATTCTGGGAGGTTAATCTGCTGAAGAAATAC
AACTTGTTTTCTGGCTGGCTCTGGAGAGTCTGTGTTTCTTTGTTCATTCA
CCTTTCAGTAGTGCTTACTACTAGATGTCAGGGACTTTCTTGGTGTTGAG
GTAGATGGTAAGAAATCCTGACACTAGTCTTGTGTAATCTGAAGGGAAGA
ATATAGTGTTAAAACAAGACCTCCCCCCTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCTTTCTTTCTTTCCTTTCT
TTCTTTCTTTCTTTCTTTCCTTCCTTCTTTCTTTCTTTTCTTCTTCCTTC
CCTCCTTTCCTTCCTTCCTTCCTTCCCTCCTTCCATCCTTTCTTTCCTTC
CTCTCCCCCTTTCTTTCTTTCTTTCCTTTTTTTCTATCCTTTCTTTTCAT
TCCTTTCCTTTTCTTTTATTTCCTGCTTTTCCTCCTTTTTATTCTTCTCT
TCCCTTCACACCTTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_p02.g1 MSMg01no045_p02.g1 CHROMAT_FILE:
MSMg01no045_p02.g1 PHD_FILE: MSMg01no045_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:01 2005
         (244 letters)



>mm_chr4_47911148_47911791
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaatacaaggtcttgtaagtataggtgatcttcagaggtgatactggacaagtagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtaaatacaaggtcttgtaagtataggtgatcttcagaggtgatactggacaagtagag 385

                                                                       
Query: 61  gacagatagccactgaagagcttaaacacagtgcaaagatgctgcctatccgggccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagatagccactgaagagcttaaacacagtgcaaagatgctgcctatccgggccaggc 325

                                                                       
Query: 121 agaggagaatccggaaaaattctgggaggttaatctgctgaagaaatacaacttgttttc 180
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaggagaatccggggaaattctgggaggttaatctgctgaagaaatacaacttgttttc 265

                                                                       
Query: 181 tggctggctctggagagtctgtgtttctttgttcattcacctttcagtagtgcttactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggctggctctggagagtctgtgtttctttgttcattcacctttcagtagtgcttactac 205

               
Query: 241 taga 244
           ||||
Sbjct: 204 taga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)