CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGAGGATGCCG
CGGAAATTCCCTCTAGGATCAATGCTGAANCACCATCCCAGTATANTGTG
TNNGTGTGTGTGTGTGTGGGTGTGTGTGTGTGTCGTGTAGTTTGCGTGTA
GTGATTATAGCTTAAGACATCTCTGGTCTCTCTTGTGGAAAAATACTCAT
CTATGCGCTGTCTTCTATATACCTAGCTATTCGTGAACAGACGCTATCTA
TGTACATTATATATATTTTCACATTGCTTCGACTGCTAATCTTTGTAAAC
TTATACTTCCAACAAAGGTATAGTGATTGTGCATATATCTCCAGTAACTA
TTCCCGAACCATATCTATCTGTGAATTATATAACTTCACATTAATCACAT
TCACAATTGTTCTTAACACACATCGCTACTTATTTGTTTCATTCAACTTA
CAATTAGACAATATCATAACTTTCCTAACCTCCCAAGCATCTGACTCTTA
ACGTTTAAAATCCCCCCACTATCATTAATCTATATAACTACCACTTCGCA
AATAATTCTCTACTATACTTATACAATTACTATAACCACTATACACTACT
ATCCCCACGCTCAATACTACCCGCATATATATTCCACTCCAATCTATCTT
ATCTCTTCTTCATTTACAACCATTATTATTTATCATTTCATTCTTACCCT
CCTAATATTTCTCTCTAAACACATGTCTACTATAGTATCATCATAATTCA
TCTCTATATATCCTACCTATCCCCGTTACACCACCACAGATTAATAACTC
CCACTACATTCTACCTGTCTATCATTTACTCTCCATCTACACTCATG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAGGACATGTCATTTTAATTACCTTCT
CCTTATGGCTAAGAATGGTACCTGTTTCATATGTTTATTGACTTTCTTTC
TCCGTCATTTGAAATCAGTCCATTTGCCACTTTTTTACTAGATATTCATT
CATTCATTCATTCATTCATTCATTCATTCATTCATTTATTTGTTTTGGTG
CTTTAAATTCTAGATTACAGACTTCTGTAAAATGTGTTTTCAGCAAAGAT
TTTGTTCCATTTCTGTACCTGTATCTTCAATAGAAAAATTGTTTATTTGG
ATGTGCACAAAATATTTTTTGTTATTGGTGGTTTTGGTTTTTGTGTGTGT
GTGTGTGTGATTTCAAGTAATGCCATTTGTCAACTCTTGTCTTTCAGTTT
ATGTTTGTTTGTTTGATTTTTTGTTTGTTTGTTTTCTGTTACTGAGTTAC
TGAAGTCCTTTACAGAAAGGCTTGCCTATAAAAATATAAATAACAGTTTT
TAATTGAAGAAGACACACACACACACATACACACACACAAACCAGTAAAA
ACATTTAAATCATAGTGAACTTATATAATTATTCAGAAAAATGGGAGCAC
CTGGTAGACAATCTTAGTAAAAATGATTCAGTTTCATAT

Query= MSMg01no046_c13.g1 MSMg01no046_c13.g1 CHROMAT_FILE:
MSMg01no046_c13.g1 PHD_FILE: MSMg01no046_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:16 2005
         (501 letters)



>mm_chr4_27699976_27700874
          Length = 899

 Score =  917 bits (474), Expect = 0.0
 Identities = 491/502 (97%), Gaps = 11/502 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggac-atgtcattttaattaccttctccttatggctaagaatggtacctgtttcata 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgaggacaatgtcattttaattaccttctccttatggctaagaatggtacctgtttcata 679

                                                                       
Query: 60  tgtttattgactttctttctccgtcatttgaaatcagtccatttgccacttttttactag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtttattgactttctttctccgtcatttgaaatcagtccatttgccacttttttactag 619

                                                                       
Query: 120 atattcattcattcattcattcattcattcattcattcattcatttatttgttttggtgc 179
           ||        ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 at--------attcattcattcattcattcattcattcattcatttatttgttttggtgc 567

                                                                       
Query: 180 tttaaattctagattacagacttctgtaaaatgtgttttcagcaaagattttgttccatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttaaattctagattacagacttctgtaaaatgtgttttcagcaaagattttgttccatt 507

                                                                       
Query: 240 tctgtacctgtatcttcaatagaaaaattgtttatttggatgtgcacaaaatattttttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctgtacctgtatcttcaatagaaaaattgtttatttggatgtgcacaaaatattttttg 447

                                                                       
Query: 300 ttattggtggttttggtttttgtgtgtgtgtgtgtgtgatttcaagtaatgccatttgtc 359
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttattggtggttttggtttt--tgtgtgtgtgtgtgtgatttcaagtaatgccatttgtc 389

                                                                       
Query: 360 aactcttgtctttcagtttatgtttgtttgtttgattttttgtttgtttgttttctgtta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aactcttgtctttcagtttatgtttgtttgtttgattttttgtttgtttgttttctgtta 329

                                                                       
Query: 420 ctgagttactgaagtcctttacagaaaggcttgcctataaaaatataaataacagttttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgagttactgaagtcctttacagaaaggcttgcctataaaaatataaataacagttttt 269

                                 
Query: 480 aattgaagaagacacacacaca 501
           ||||||||||||||||||||||
Sbjct: 268 aattgaagaagacacacacaca 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 899
Length adjustment: 10
Effective length of query: 491
Effective length of database: 889
Effective search space:   436499
Effective search space used:   436499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)