CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAGGTGGATTTAGTCAACATTTACAGCAGAGGAAGTATTAGTATT
GATGTCCTTTTGTTACTATTTGTGATAACCTGATAATCAATCAATAGAAG
TTGTGCTTTTTTAATTGCTCTCTACTATATAGTTTGAAAGAGAGTTCTCC
ATAACCTGAAGATTATAGCTTTGTCAACCCACTGTCTGTGCTTATGAGTC
ATAAGCACCCACACCTAGGTTTTCTGTTGGTTCTATTTCTATAAACCCTG
ATATTCATGCTTTAACCACATATAGCTGATTCAATGAGCTGGCCCCTCAG
TATAAATGAAAAGAAAAATGTCACTTAAACATAAGTTCAGAATTCTGTTA
AGTTAAACAAGTGATAAACAGTATATACTTCCCTATGTTCTATGTTTGTC
ATGTCAGAATATTCAAATTAAAGCATAAAATTTGAGGATCCAAAAAGTAA
AACTTTTCATCCATTATCACTTAAGTTTACACATTTTTATATGATTACAT
TGTCAAGCTGTAGCGTACAATATGCTTATATCAGGAATGGATCACTTTGA
AACATAAATTAGTTTTAATTTTTTTCTTTATATTTCCTTCGGGACAGGGT
TTAATGTATAACTCAGCGGAGATCTCAGGCTTAGAATCAGGAGAGAGAAA
GGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGCATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCATATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AACAATTCCTCTCCTGGGCATATATCCTGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTTTTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGC
TAAACT

Query= MSMg01no046_d19.b1 MSMg01no046_d19.b1 CHROMAT_FILE:
MSMg01no046_d19.b1 PHD_FILE: MSMg01no046_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:22 2005
         (660 letters)



>mm_chr4_78971589_78972649
          Length = 1061

 Score = 1139 bits (589), Expect = 0.0
 Identities = 640/657 (97%), Gaps = 1/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaggtggatttagtcaacatttacagcagaggaagtattagtattgatgtcc 64
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaggtggatttagtgaacatttgcagcagaggaagtattagtattgatgtcc 264

                                                                       
Query: 65  ttttgttactatttgtgataacctgataatcaatcaatagaagttgtgcttttttaattg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 ttttgttactatttgtgataacctgataatcaatcaatagaagctgtgcttttttaattg 324

                                                                       
Query: 125 ctctctactatatagtttgaaagagagttctccataacctgaagattatagctttgtcaa 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ctctctactatatagtttgaaggagagttctccataacctgaagattatggctttgtcaa 384

                                                                       
Query: 185 cccactgtctgtgcttatgagtcataagcacccacacctaggttttctgttggttctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccactgtctgtgcttatgagtcataagcacccacacctaggttttctgttggttctatt 444

                                                                       
Query: 245 tctataaaccctgatattcatgctttaaccacatatagctgattcaatgagctggcccct 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tctataaaccctgatattcatgctttaaccacatataactgattcaatgagctggcccct 504

                                                                       
Query: 305 cagtataaatgaaaagaaaaatgtcacttaaacataagttcagaattctgttaagttaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtataaatgaaaagaaaaatgtcacttaaacataagttcagaattctgttaagttaaa 564

                                                                       
Query: 365 caagtgataaacagtatatacttccctatgttctatgtttgtcatgtcagaatattcaaa 424
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 caagtgataaacagtatatacgtccctatgttctatgtttgtcgtgtcagaatattcaaa 624

                                                                       
Query: 425 ttaaagcataaaatttgaggatccaaaaagtaaaacttttcatccattatcacttaagtt 484
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 625 ttaaagcataaaatttgaggatccgaaaagtaaaacttttcatccattatcacttacgtt 684

                                                                       
Query: 485 tacacatttttatatgattacattgtcaagctgtagcgtacaatatgcttatatcaggaa 544
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 685 tacacatttttatatgattacattgtcaagcggtagtgtacaatatgcttatatcaggaa 744

                                                                       
Query: 545 tggatcactttgaaaca-taaattagttttaatttttttctttatatttccttcgggaca 603
           ||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggatcattttaaaaaaataaattagttttaatttttttctttatatttccttcgggaca 804

                                                                    
Query: 604 gggtttaatgtataactcagcggagatctcaggcttagaatcaggagagagaaaggt 660
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 gggtttaatgtataactcagcggagatctcaggcttagaatcgggagagagaaaggt 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)