BAC Information

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BAC

Clone NameMSMg01-048E20
Chromosome4 (Build37)
Map Location 16,374,102 - 16,501,216
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E20.T7 (MSMg01no048_e20.b1)MSMg01-048E20.TJ (MSMg01no048_e20.g1)
ACCAG278102AG278103
length1,2501,326
length of high quality
(start - end)
771 (77 - 847)230 (67 - 296)
definitionCHROMAT_FILE: MSMg01no048_e20.b1 PHD_FILE: MSMg01no048_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:05 2005CHROMAT_FILE: MSMg01no048_e20.g1 PHD_FILE: MSMg01no048_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,374,102 - 16,374,871)(16,500,994 - 16,501,216)
sequence
NNNTTAACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCACTTTTGCCAATAATACCTATTTTAAAAGCCTAATATAACTAATTAAG
ATTTTCTTGGTCAAAATCTCCATGTTACACCATGTTATCTGAGGAAGTTA
TCCCGGAATTTCTTCCTCCACTTCTATTAATACAGCTTCAGAACCTACTT
GGGATGCATAATTTATTTCAGCTCAATCTTGGAAATGTATAAGCAAAATA
TAAAACATCTAATTTTGTTTGAAACTTTTCAGGGGCATGCACATTGTCCC
CATATGCTTGACTCTTTGATTATTAATTCATCTCAGTTTCATTCACAGAA
AAGTAAAGCATTACAAGTAGCTTTGGAGTCTTTTTCTTTGCATTTTTAGA
TTTATTTCATTAGCATCTTTATGCACAACAGTCATTTGTTTCAATGTTTT
TCATGCTTAAATGGAAAAGCTTTCATTGGAAATGAATTTTTAAAAAAGTA
GGTTCAATGATCTATGTGAAATAAATGATCTCAGTGCTTATCTTCATAGA
GAAGCCACTCATGAGTTATCGTTCTCATTTGTAATGATAGATAACATAGC
TCAAGGATACATCACAAATTCTCTGAAAATGTACCCTGTCTGTATAAATG
CATTTACCTATATGAAAAAAATGAGTTACTTTTTAAATAAATATTTGAAA
GTCGGTATAGTCTAGAAACAATANAGTTAGAGATGGTCAAATTGTGATTT
ATGTCCCACCCAAAATATAATTCAGTCAGCCAGAGTGACTTAACTTAGGA
AATTCCTTCTCTGCTTACTAGTCTAATTAGCATGTTTCAGTACATCCAGT
AACAGTTTGGGATGAAGATGACCTCTGTCAGCTGGTATCCTAGAAGCAAA
TACTTCAGATCTATGTTATCGAAAGGAAAAGGGTATATTTCATTGTCATC
TCTTAAAAAGCTTCTTTTAATGGAAACTTTTTTCACAAGCACTTGTTTGA
TGCAATTTAAAGGGAATTCTGTTTAGAAAAACTTTGTTTCTGGAAAAATT
AAAATTGACCCCTCTCTTTTTTTTGTTTCTATGGGGTTACTTATGAAAAT
AATTTTTTGTTTTTTTTTAAAGAATTATCCCCTCTGCAAAATTTATAATT
TCTATTTCTTTCTCTTAAAAAAAATTCCTTTATAATTCTTTATGTAAAAA
CAAATACTCTTTCTAATTTTTCTTTGATTATTCTTATTATTGTTTTAATA

TTTTTAACAAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTAAATTTGTCTTTGTTGAGAGGGTGTTTTT
ACTCTTGGCTTCTGTTTCCTGTCCGCATTTTCAGAGTGTGTTGAGTATGT
GTTGCTGGTTTTTCTGGTCTCCTTGGCTGAAGTGTTCATAGGAAATGCCT
GATAGTATTGGAGGCTGGGAGCAGCAATTAGTGAGCAGGAGGAGGTCAGG
AGCGGGTGGTGAGTGGTTTCCTTAGGAGATGTGGGTAGGGGGAGGNNNNC
NNNNNNNNNNNNNNNNNNCNNNNNCNTTCTNTNTTTCTNTTTCTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTCTTCTTTTTTTCCTCTTCTCTTTTTTTTTTCCCCCCTT
CTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTCTT
TTTTCTTTTTTTTCCTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTCTTTT
TTTTTTTCTTTTTTTTCTTTTTTTTTTTCTTTTTTTCCTTTTTTTCTTTT
TTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTNTTTCTTTTTTCTTTCTTC
TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTTTTTT
TTTTTTTTCTCCTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTT
TTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTCCTT
TTCTTTTCTTTTTTTTTTTTTCTTTTTTTTTCCTTTCTTTTCTTTTTTTT
TCTTTTCTTTTTTTCTTTTTTCTTTTTCTTTNTTTTTTTTTTTCTTTTTC
TTTCTCTTTCTTTTCTTTTTTTTTTTTCTTTCTTTTTCTTTTTCTTCTTC
TTTTCTTNCCTTTTTTTCTTTTTTTTTTTTCTTTTTTTTCTTTTTCTTCT
TTCTTTCTTTTCTTTTTTCTTTTTTTCTTTTTTTTCCTTTTTTTTCCTTT
TTTTTTTTTTCTCTTTTTTTTTTCTTTCTTTCTTCTTTTTTTTTTTTCTT
TTTTTTTTTTTCCCCTCTTNTTTTTTTTTTTTTTCTTTTTTTTCCTTTTT
CTTTTTTTCTTTCTTTTCTTTTTCTTTTTTTTCCTTTCTTTTCTTTTTTC
TTTTTTTCCTTTTTTTTCCTTTTTCCNCTCTCTTTCCCTTTTTCTTTTCT
TTCTCTCTTCTTCTNTCCTTTTTCTCTCCTTTTTTCTTCTTTTTTTTTTC
NTTCTTTCTTTTCTCCTTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e20.b1 MSMg01no048_e20.b1 CHROMAT_FILE:
MSMg01no048_e20.b1 PHD_FILE: MSMg01no048_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:05 2005
         (771 letters)



>mm_chr4_16373902_16375072
          Length = 1171

 Score = 1468 bits (759), Expect = 0.0
 Identities = 767/770 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagcctaatataactaattaagattttcttggtcaaaatctccatgttacaccatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcctaatataactaattaagattttcttggtcaaaatctccatgttacaccatgtt 260

                                                                       
Query: 61  atctgaggaagttatcccggaatttcttcctccacttctattaatacagcttcagaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgaggaagttatcccggaatttcttcctccacttctattaatacagcttcagaacct 320

                                                                       
Query: 121 acttgggatgcataatttatttcagctcaatcttggaaatgtataagcaaaatataaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgggatgcataatttatttcagctcaatcttggaaatgtataagcaaaatataaaac 380

                                                                       
Query: 181 atctaattttgtttgaaacttttcaggggcatgcacattgtccccatatgcttgactctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctaattttgtttgaaacttttcaggggcatgcacattgtccccatatgcttgactctt 440

                                                                       
Query: 241 tgattattaattcatctcagtttcattcacagaaaagtaaagcattacaagtagctttgg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactattaattcatctcagtttcattcacagaaaagtaaagcattacaagtagctttgg 500

                                                                       
Query: 301 agtctttttctttgcatttttagatttatttcattagcatctttatgcacaacagtcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctttttctttgcatttttagatttatttcattagcatctttatgcacaacagtcatt 560

                                                                       
Query: 361 tgtttcaatgtttttcatgcttaaatggaaaagctttcattggaaatgaatttttaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttcaatgtttttcatgcttaaatggaaaagctttcattggaaatgaatttttaaaaa 620

                                                                       
Query: 421 agtaggttcaatgatctatgtgaaataaatgatctcagtgcttatcttcatagagaagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaggttcaatgatctatgtgaaataaatgatctcagtgcttatcttcatagagaagcc 680

                                                                       
Query: 481 actcatgagttatcgttctcatttgtaatgatagataacatagctcaaggatacatcaca 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 actcatgagttatcgttctcatttgtaatgataggtaacatagctcaaggatacatcaca 740

                                                                       
Query: 541 aattctctgaaaatgtaccctgtctgtataaatgcatttacctatatgaaaaaaatgagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattctctgaaaatgtaccctgtctgtataaatgcatttacctatatgaaaaaaatgagt 800

                                                                       
Query: 601 tactttttaaataaatatttgaaagtcggtatagtctagaaacaatanagttagagatgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 tactttttaaataaatatttgaaagtcggtatagtctagaaacaatatagttagagatgg 860

                                                                       
Query: 661 tcaaattgtgatttatgtcccacccaaaatataattcagtcagccagagtgacttaactt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcaaattgtgatttatgtcccacccaaaatataattcagtcagccagagtgacttaactt 920

                                                             
Query: 721 aggaaattccttctctgcttactagtctaattagcatgtttcagtacatc 770
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aggaaattccttctctgcttactagtctaattagcatgtttcagtacatc 970


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1171
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1161
Effective search space:   883521
Effective search space used:   883521
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no048_e20.g1 MSMg01no048_e20.g1 CHROMAT_FILE:
MSMg01no048_e20.g1 PHD_FILE: MSMg01no048_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:05 2005
         (230 letters)



>mm_chr4_16500914_16501543
          Length = 630

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tctaaatttgtctttgttgagagggtgtttttactcttggcttctgtttcctgtccgcat 62
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct: 303 tctagatttgtctttgttgagagggtgtttttactcttggtttctgtttcctgtctggat 244

                                                                       
Query: 63  tttcagagtgtgttgagtatgtgttgctggtttttctggtctccttggctgaagtgttca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttcagagtgtgttgagtatgtgttgctggtttttctggtctccttggctgaagtgttca 184

                                                                       
Query: 123 taggaaatgcctgatagtattggaggctgggagcagcaattagtgagcaggaggaggtca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taggaaatgcctgatagtattggaggctgggagcagcaattagtgagcaggaggaggtca 124

                                                      
Query: 183 ggagcgggtggtgagtggtttccttaggagatgtgggtagggg 225
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggagcgggtggtgagtggtttccttaggagatgtgggtagggg 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)