BAC Information

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BAC

Clone NameMSMg01-048F15
Chromosome4 (Build37)
Map Location 77,116,889 - 77,117,349
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F15.T7 (MSMg01no048_f15.b1)MSMg01-048F15.TJ (MSMg01no048_f15.g1)
ACCAG278140AG278141
length1,2901,230
length of high quality
(start - end)
286 (131 - 416)611 (78 - 688)
definitionCHROMAT_FILE: MSMg01no048_f15.b1 PHD_FILE: MSMg01no048_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:11 2005CHROMAT_FILE: MSMg01no048_f15.g1 PHD_FILE: MSMg01no048_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTGCATTGGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCT
TTGTTTAGTTCTGAGCCCCATTTTTTAATGGGTTCATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTCCCCCCCCATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACAGTGTCGTTTGCCTTGCAGAAGCATTGCAGTTTCATGAGGTC
CCATTTGTCAATTCTCGATCTTACTGTGCAAGCCATTGCTGTTCTATTCA
GGAATCTTTCCCCTGTGCCCATATCTTCAAGGCTTTGCTCCACTTTCTCC
TCTATAAGTTTCAGTGTATCTGGTTTTATGTGAAGTTCCTTGATCTTTTT
TTATTTGACCTTACTACAAGGAGATAGTAATGGATCAATTTGCCCTCTTC
TACATGATAACTACCAGCTGTGCCAGCTTCATTTGTTGAATATGTTGTCT
TTCTTCCTCTGCACGGTTTCATCTCCTTTGTCTAAGTTCATGTGACTATT
CTTGTGTGGTCTCTTTTCCGTTTTTCTCTTTTCTTTCCTCTGTTCTATTT
CTCTCTTTCTTTTTTTTTTTTTAGTTTTTTTTTTTTTCTTAGTTTTTTTC
TTTTTTCTTATATTTTCTTTTTTTTTTTCTTCTAATTTGTCTTTATTTAT
TTTTTTTTTTTTTTTATCCTTTTCTATTTATTTTTTTCTTTTTTCTTTTT
TCTTTTTTCCTCTTTTTTTTTCTTTTTTCTTTTTTTTCTTTATCTTTTTT
TTTTTTCTTATTTTTTTATTTTCTTTTTATTCTTCTTTATTTTTTTCTTT
TTTTTTCTTTTCTTTTTTTTCTTCTTTTTTCTCTTTTTTTCTTTTTTTTT
TTTTTTTTTTTTTACTTTTTTTTTTCTATTTTATTCTCTTCATTCTTTTT
CTTCTATTCTGTTCATTTTTTATTATTTTTTTTCCTTTATTTTTTTTTTC
TATTTTTTTTTTTTTTTTCTTTTCTTTTTTTTTCTTTTTTTTTTTTTGTC
TTATTTTTTTTTTTTTTTATTGTTTTTTTTTATTTCTTTCTTATTATTTT
CTCTCTATCTAGTATTTTTTATTTTATCTTTATTTTTTTCTTTTTTTTCT
TATTTCCTTATCTCTTCTTCGCTATCTTTTATATTCTCTTCTCTCTCTTT
TTCTTGCTTTGTATTATTGTTTATTTATTTTCTCTTATATCTTCTCTCGT
TCTTTAATTTTTTTCTATTTCTTCTTCTTTCTTTCTCTTT
NGTTGTTTNNNNNAATGAAGGNAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCATTGCAGATTGGATAGATT
TAGAGTCTAGCTTCTTAGTTATTATGCTAAGACCGACCTGATAAAAGAGA
TGTCTTATTCACGAGAACCTAAAGATTCATACTGTCAGATGTGAGCAGTG
TGAAACTGATGAGTTATTGTTGAGCTCATAATTATAGTGGGTGTAGCACT
CCTGACCTATAGCACCCACCATCTAAGGGACAGCTGTAAAAGAGAAGAAA
GCCACCTGGATATGAGACATGGTAAGGATTAATCTATTGCTGTTTTAAAA
ACAAAATCTCAAATATTTGATTTACCAAATTAAGAGTCATAAGCCAGATG
CTGTGGCAAATGTCTGTTAACTTGGAGAGGCAGAAAAAGCACCCGGTTTA
TGTTCCTACTCCACTGACTCCCAAGAGTCCCAGAAAGAAAGAGCTCTCTC
TTTCTCCAGAGTGTCTTAAATTCTTGTCAACAAAAAGAAAATTCTCTTTT
CTGTGCTTTCTTATGTTCACTCTGTGTCAACTGCTTGCTTACTTTGTCTT
TTAACCCACTGTTGCCTTAACTTAGCTCTTCTTTACAGAGAGTTTCTGGG
TTTGTGCTAGGACTGAGTCATAACACGACCACTTGTTTGCAGTAAATAGA
AAACTCTTGGGTTAAAGGTGCTAGTACTGAGGTATAACAAACCTAGCCTT
AGGTGTTTCCAGTTCACAATCTCTGTCCTATGTTCTGTCCATTTGTTTAT
TTGACATCTTTAATTTGTCTACTTCTTTACCGTTTTTCCATTATGTTTTA
TGTAGTATCTTTTCTTTTTTTTTTGTTTTTTTCTTTTTTCCATCTTCTAT
TCTTTTTTATCTATTTTTTTTTATATTTTCTTTTTTTTCTTTTTCTTTTT
TTTATTCCTTATTTTATTTCTTTTTTCTTTTTTTTCTTTATTTTTTTTTT
TTTTTTTATTTTTCTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTT
TTTTGTATTCTTCTTTTTTCTTTTCTTATTTTTTTTCTTTTTCTTNTTTT
TTTCTTATTTTTTTTTTTATTCTTTTTATCTTATTTTTTTTATTTCTCTT
ATATTCTCTTTTTTGTTTCCTTCCTTTTCATTATTTATCTCTCTAATCTC
TTTCATTTCTTTATCTTTTTTCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f15.g1 MSMg01no048_f15.g1 CHROMAT_FILE:
MSMg01no048_f15.g1 PHD_FILE: MSMg01no048_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:11 2005
         (611 letters)



>mm_chr4_77116889_77117900
          Length = 1012

 Score =  822 bits (425), Expect = 0.0
 Identities = 452/461 (98%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccattgcagattggatagatttagagtctagcttcttagttattatgctaagaccgacc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 461 tccattgcagattggatagatttagagtctagcttcttagttattatgctaagacagaca 402

                                                                       
Query: 62  tgat-aaaagagatgtcttattcacgagaacctaaagattcatactgtcagatgtgagca 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 401 tgataaaaagagatgtcttattcacgagaacctaaagattcatactgtcaaatgtgagca 342

                                                                       
Query: 121 gtgtgaaactgatgagttattgttgagctcataattatagtgggtgtagcactcctgacc 180
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 341 gtgtgaaactgatgagttattgttgagctcataattatagtgggtgcagcacccctgacc 282

                                                                       
Query: 181 tatagcacccaccatctaagggacagctgtaaaagagaagaaagccacctggatatgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tatagcacccaccatctaagggacagctgtaaaagagaagaaagccacctggatatgaga 222

                                                                       
Query: 241 catggtaaggattaatctattgctgttttaaaaacaaaatctcaaatatttgatttacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 catggtaaggattaatctattgctgttttaaaaacaaaatctcaaatatttgatttacca 162

                                                                       
Query: 301 aattaagagtcataagccagatgctgtggcaaatgtctgttaacttggagaggcagaaaa 360
           ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 161 aattaagagtcatgagccagatgctgtggcaaaagcctgttaacttggagaggcagaaaa 102

                                                                       
Query: 361 agcacccggtttatgttcctactccactgactcccaagagtcccagaaagaaagagctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agcacccggtttatgttcctactccactgactcccaagagtcccagaaagaaagagctct 42

                                                    
Query: 421 ctctttctccagagtgtcttaaattcttgtcaacaaaaaga 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ctctttctccagagtgtcttaaattcttgtcaacaaaaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space:   602202
Effective search space used:   602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)