Query= MSMg01no048_g08.b1 MSMg01no048_g08.b1 CHROMAT_FILE:
MSMg01no048_g08.b1 PHD_FILE: MSMg01no048_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:17 2005
(676 letters)
>mm_chr4_96411677_96412752
Length = 1076
Score = 1230 bits (636), Expect = 0.0
Identities = 660/668 (98%)
Strand = Plus / Minus
Query: 1 aggaggacagagaaagaacaggaggcaatctcttactctaaaattatactggcaaaatta 60
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 668 aggaggacagagaaagaacaggaggcaatctaatactctaaaattatattggcaaaatta 609
Query: 61 aatgcttcaaaccagtttagaacacacgtgcacacgccaaattgtgttgggggaggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aatgcttcaaaccagtttagaacacacgtgcacacgccaaattgtgttgggggaggagat 549
Query: 121 aaataataaagctgctatggaggcttcctgaatagagtagagcaattgacatagccacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaataataaagctgctatggaggcttcctgaatagagtagagcaattgacatagccacaa 489
Query: 181 gtaggacttaccatacacatctggcccattatagaaaatggagttaggttggaaaggact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtaggacttaccatacacatctggcccattatagaaaatggagttaggttggaaaggact 429
Query: 241 gtttttgccaatcccggggacaaaggcaacagtttaggagacaaaggaaacatgaggtgt 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtttttgccaatcctggggacaaaggcaacagtttaggagacaaaggaaacatgaggtgt 369
Query: 301 cttatttggcatttgctgttaaaaggtaataggaaaggggttaagtaaagaactattaga 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 368 cttatttggcatttgctgttaaaagggaataggaaaggggttaagtaaagaactattaga 309
Query: 361 gatgtgctgttgtctgccttttggctcagtgttagatagcccacccagcttcccatccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gatgtgctgttgtctgccttttggctcagtgttagatagcccacccagcttcccatccac 249
Query: 421 attctaaaaatgatgaggatgctaataacattgttactatttatagagaacatttataga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attctaaaaatgatgaggatgctaataacattgttactatttatagagaacatttataga 189
Query: 481 ccttaaacaattctaagcaacatttcaagtgctattaaatattaactcttttaattcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ccttaaacaattctaagcaacatttcaagtgctattaaatattaactcttttaattcctg 129
Query: 541 tgacagctaggaattaaaggtagttactattctatttttcaagcgaggaaactgaggtag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgacagctaggaattaaaggtagttactattctatttttcaagcgaggaaactgaggtag 69
Query: 601 catggggagaccaaaacctatatacacctaataaataaattcatcagtaaggctgagcca 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 68 catggggagaccaaaacctatatacacctaataaataaattcatcagtaagactgagtga 9
Query: 661 atgcagct 668
||||||||
Sbjct: 8 atgcagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_g08.g1 MSMg01no048_g08.g1 CHROMAT_FILE:
MSMg01no048_g08.g1 PHD_FILE: MSMg01no048_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:17 2005
(629 letters)
>mm_chr4_96239560_96240589
Length = 1030
Score = 1151 bits (595), Expect = 0.0
Identities = 622/631 (98%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 1 gtagtcctcatagtttataagcaggatctcctattattcaggtatccctagtctagactc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtagtcctcatagtttataagcaggatctcctattattcaggtatctctagtctagactc 260
Query: 61 aaactttgtgggtgtttagtaaacattcccttgattaataagtaataacttctgttctga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aaactttgtgggtgtttagtaaacatccccttgattaataagtaataacttctgttctga 320
Query: 121 gtataaggttatgtatataaaatctacttttatttccaaatggagcttataaattgggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtataaggttatgtatataaaatctacttttatttccaaatggagcttataaattgggtt 380
Query: 181 gaatgaattttgtagaagctgaaggtataattgggtaggaaatgtgatatgcttgtactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgaattttgtagaagctgaaggtataattgggtaggaaatgtgatatgcttgtactg 440
Query: 241 tggtagaaagcgaaatcagcattggaataggcctgtctgtttcaaggccatggttgtctg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtagaaagtgaaatcagcattggaataggcctgtctgtttcaaggccatggttgtctg 500
Query: 301 catccttt-aacagagtcatttataattcttaatacccagagagatgatgttataatctg 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcctttaaacagagtcatttataattcttaatacccagagagatgatgttataatctg 560
Query: 360 aaaaaaaaagttggtttggttatttgaagataaatcaatggacagagaaacacca-agaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 561 aaaaaaaaagttggtttggttatttgaagataaatcaatggacagagaaacac-agagaa 619
Query: 419 cattggaaaaattctgactaaacttcaagccatgaattgctctatagtaaacataaggac 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 cattggaaaaattctgactaaactccaagccatgaattgctctatagtaaacataaggac 679
Query: 479 agctctctgcttcagcagcaaaggtcctttgccactattagaacagaaaaatgctgagac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agctctctgcttcagcagcaaaggtcctttgccactattagaacagaaaaatgctgagac 739
Query: 539 atccattagcaaacaaagccaggttccatctaaatacatctgatctacgaatcttccttt 598
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 740 atccattagcaaacaaagccaggttccatctaaatacatatgatctacaaatcttccttt 799
Query: 599 ctagactcctcatagtagatttgaatatcca 629
|||||||||||||||||||||||||||||||
Sbjct: 800 ctagactcctcatagtagatttgaatatcca 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
