BAC Information

Click to search

BAC

Clone NameMSMg01-048I01
Chromosome4 (Build37)
Map Location 93,768,379 - 93,769,143
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048I01.T7 (MSMg01no048_i01.b1)MSMg01-048I01.TJ (MSMg01no048_i01.g1)
ACCAG278252AG278253
length1,1761,242
length of high quality
(start - end)		765 (72 - 836)479 (113 - 591)
definitionCHROMAT_FILE: MSMg01no048_i01.b1 PHD_FILE: MSMg01no048_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:31 2005CHROMAT_FILE: MSMg01no048_i01.g1 PHD_FILE: MSMg01no048_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGC
AGTGATTTTTGTCCATTTAAACTTATTTGTCACTTCGCAACCTTCAGTTT
TACTCCTAAAATGCTAAAGAAAACCAGGAACACTATAAATGAGCCCCATT
AGTTTTAGCACTTTATTAATAGCATTTAACTTGTACTATTAAACTATTAA
CATATAATAAAAAACTAGATTATTGCATTAGCAGGGTAAATGTATTCCAG
TGAATAATAATAAACCATTGGCAATTTACGAGGAGCTCAATTTAGCTTAA
ATTATATTGTTAACAATATGCCTGGTTTGCTCACATGAAACTTAAAAACC
CACTCTCAAGAATTCATATAAAATCCCTTATGCCATTTATGTGTGCTGTA
ACATGTAGAGAGAATGGGGAGTAGACTAATTGTCTAAATTAACATTCGAG
CCAGTCTTCAGAAGAGCCATCCTTGTATCAGCCTTACAAAATGTACACCC
ATCACTTCTTATATTCAATATGCTACTATTGATGTAGTATCTGAGGTTAG
GTAGTATATATAGTTTTGCCTGCAGGTACGTATGTGCACCATGAGTGTTC
CTGGTGTGCAAGGAACCCAAAGGGGATTGTTAGATCCTCATGAACTAGAG
TTATAGATAGGTGTAAGCCATAGTGTGGGTTCTAGTAACAAAACTCAGAC
TCTGTGTAGGACCAATCCTAATTGATCCTAATTACTGAGCTATCTCTCTA
GCCCCTCTTTTCTTGAATTTGTATGTATCCATTTGTACTTGTTTTTTCAG
TGACTGGGTAAGATATATTATGTTGGCCCTTTTGGAACTATGTAGTGATT
TATGGGGCTAAAGGTCCCTCATAAAATTTAACATATGATTGAGTCTTCTA
TTAAACATTCTTACCCTGGGGAGAAAATGGATCAACCCCTTTCCGGAAAA
AACCTCTCTTTAAATTTTTTTAAAAATCCCCCAAAAAGGTAAGGCTCGCC
GAAAAACCCCCCTCGCGGGGTTTTTTTCCCCGGGCCCCTAATTTTTTTAA
AAAGGGGCCCCAACCAAAGAATGGTCACTTTTTCGTTTTGGGCCCCTACC
CGTGGTAAATAAAAAAATCGGCCCTAATGGGCTCTCCTCCCCTTCCTCTG
AGTAAGAATTCTTATTTTCCTCTTTA

TAACAATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTCTATAAATCATCTCTTATGTTGGGGAAGCTTGCC
TCTGTCCTTCCTGTTCAGATTCCTAAACTTTTCATTTCCACAATTCTCTC
AGTCACTCCCCCCCACCCCCCGTGTTTTATCTATTTTCATGTTTAGGGCT
TGAAAAGTTTATTTTGTTTCTTTCAATGTTTGTTTCTTTATTCTTGGTAT
TCTTTAAGGGATTTATTAATTTTCTCTTCATATAGTTGGGTTTACAGTCT
TTTTCTTATGTTTTAGTTATTTTGGAATATTCAGGTCCTTTTGTGATGAG
ATGGCTGGGTTTTAGTGATAACATATTGTTCTGGCCACTACTGATTGTGT
TCTTATATTCTAGGCATCTGTATTTAGGTTGATTATTGGTTTAGGTGCCA
ATTTCTAGGTTTATCTTTGTTGGGTGGGTGCTTTGTTCCTTTGTTTCTGC
TTTCTTTCTGGATTTTCAGAGCTTGTGATAGCTGGAATGGCTGTGTGTTT
CATATTTTACTGACCTTCTCAGCTGGTGTGTTCATAGAGAATGCCTGTTT
AGATGCTGGGGTGCAGTAATGAGTGTGAGAAGTGAGGTCTGGTGTAATGT
TGTGTAACAGCCTTTGCGATCCACAGTAAATGTGAACAGTGTCCATGCTA
GACTGCTTCTAATGTTATATTGCACTGATAAGGAAAAGCCTGAAGTCTTT
GTTTCTTGTTCAATAGTTTTAATTGTTTTAATGTCTTGTATATCGTCTAT
CCTTGTTATATAATATTTCTTTAATTAAATTGTTTTTATTTATATACTCT
TTTCTATTTTTTTTTTTTTATTTTTATCTTTCTTTTCTTTTACTATTCTT
TTTTTTTTCTATTCTTCATTAATTTCTATATATTATTAACTCCTCTCTCT
TTTAATTCTTTATTATAATTTTTTTTTCTTCATATTATTTATTTTTTATT
TCTCTTCATATCTTTTCTATTATTTTCTAATTTCCTTTTATTTCTATCTA
TTCTTCCAATCTTTATTTATTTTTATTTATATCCTAATTTACTTATCTAT
TTTCTTTCTTTTATTTATTTTCTTTCTATTGTTTCTTTACCTATTTTTAA
CTTTCTTCTCTCTTTTATTTTTCGCTATTTCTCTTATGAGTATCTCTATC
ATTTATTAACTCTTCATTATTTCCTATATAATAACTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_i01.b1 MSMg01no048_i01.b1 CHROMAT_FILE:
MSMg01no048_i01.b1 PHD_FILE: MSMg01no048_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:31 2005
         (765 letters)



>mm_chr4_93768179_93769343
          Length = 1165

 Score = 1433 bits (741), Expect = 0.0
 Identities = 759/765 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatttgtcacttcgcaaccttcagttttactcctaaaatgctaaagaaaaccaggaac 60
           |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||
Sbjct: 201 cttatttgtcacttcgcaaccttcagttttactaataaaatgctaaagaaaagcaggaac 260

                                                                       
Query: 61  actataaatgagccccattagttttagcactttattaatagcatttaacttgtactatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actataaatgagccccattagttttagcactttattaatagcatttaacttgtactatta 320

                                                                       
Query: 121 aactattaacatataataaaaaactagattattgcattagcagggtaaatgtattccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactattaacatataataaaaaactagattattgcattagcagggtaaatgtattccagt 380

                                                                       
Query: 181 gaataataataaaccattggcaatttacgaggagctcaatttagcttaaattatattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaataataataaaccattggcaatttacgaggagctcaatttagcttaaattatattgtt 440

                                                                       
Query: 241 aacaatatgcctggtttgctcacatgaaacttaaaaacccactctcaagaattcatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaatatgcctggtttgctcacatgaaacttaaaaacccactctcaagaattcatataa 500

                                                                       
Query: 301 aatcccttatgccatttatgtgtgctgtaacatgtagagagaatggggagtagactaatt 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 aatcccttatgccatttatgtgtgctgtaacacgtagagagaatggggagtagactaatt 560

                                                                       
Query: 361 gtctaaattaacattcgagccagtcttcagaagagccatccttgtatcagccttacaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctaaattaacattcgagccagtcttcagaagagccatccttgtatcagccttacaaaa 620

                                                                       
Query: 421 tgtacacccatcacttcttatattcaatatgctactattgatgtagtatctgaggttagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtacacccatcacttcttatattcaatatgctactattgatgtagtatctgaggttagg 680

                                                                       
Query: 481 tagtatatatagttttgcctgcaggtacgtatgtgcaccatgagtgttcctggtgtgcaa 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tagtatatatagttttgcctgcaggtacgtatgtgcaccatgtgtgttcctggtgtgcaa 740

                                                                       
Query: 541 ggaacccaaaggggattgttagatcctcatgaactagagttatagataggtgtaagccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 ggaacccaaaggggattgttagatcctcatgaactagagttatagataggtgtaagccac 800

                                                                       
Query: 601 agtgtgggttctagtaacaaaactcagactctgtgtaggaccaatcctaattgatcctaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtgtgggttctagtaacaaaactcagactctgtgtaggaccaatcctaattgatcctaa 860

                                                                       
Query: 661 ttactgagctatctctctagcccctcttttcttgaatttgtatgtatccatttgtacttg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttactgagctatctctctagcccctcttttcttgaatttgtatgtatccatttgtacttg 920

                                                        
Query: 721 ttttttcagtgactgggtaagatatattatgttggcccttttgga 765
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ttttttcagtgactgggtaagatatattatgttggcccttttgga 965


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space:   872025
Effective search space used:   872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |