BAC Information

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BAC

Clone NameMSMg01-048N02
Chromosome4 (Build37)
Map Location 47,911,078 - 47,911,580
singlet/doubletsinglet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048N02.T7 (MSMg01no048_n02.b1)MSMg01-048N02.TJ (MSMg01no048_n02.g1)
ACCAG278485AG278486
length1,1991,180
length of high quality
(start - end)		713 (74 - 786)620 (81 - 700)
definitionCHROMAT_FILE: MSMg01no048_n02.b1 PHD_FILE: MSMg01no048_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:10 2005CHROMAT_FILE: MSMg01no048_n02.g1 PHD_FILE: MSMg01no048_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TCAGACCTTTAAAGACCATAAAATACCAATATTCTTCAAACTATTCCACA
AAATAGCAACAGAAGGTACACTACCAAATTCATTCTATGAAGCCACAATT
ACTCTGATACCTAAACCACACAAAGACCTAACAAAGAAAGAGAACTTCAG
ACCAATCTCCCTTATAAACATTGATGCAAAATTACTCAATAAAATTCTTG
CCAACCAAATCAAAGAGCACATCAAAATGATTATTCACCATGATCAAGTA
GGCTTCATCCAAGGGATGCAGGGATGGTTCAATATACAGAAATCCATCAA
TGTAATCCACTACATAAACAAACTCAAAGGGAAAAAAAAACATGATCATC
TCGTTAGATGCTGAAAAAGCGATTGACAAAATTCGGCATCCCTTCATGTT
AAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATAGTAA
AAACAATATACAGAAAACCAGTAGCCAACATCAAACTAAATGGAGGGAAA
GTTGAAGCAATCCCAGTAAAATCAGAGACTAGACAAGGTTGCCCACTCTC
TCCCTATCTATTCAATATAGGACACAAAGTTCTAGCTTGAGCAATTCGAC
AACAAAAGGAGGTCAAAGGGATACAAATTGGAAAGGAAGAAGTCAAAATA
TCACTATTTGCAGATGATATGATCTTGTGACCCCCAAAATTCCACCAGAG
AACTTCTAAAGCTGATAAGCAACTTCAGTATAGTGGCTGCATACAAAAAT
TAACTCAAACAAATCAGTAGCCCTTCCTCTACTGAAAGGCTAAACAGGTT
GAGAAAGAAATTAGGAAAACAACACCCCTTCACAATAGTCACAAAATACT
TTTACATACCTTTGGGGTGATTCTAAGCAGGCAAGTGCAAGATCTGTATG
ACAAGAACTTTCAAGTTCCTGAATAAAGAAATTGAAAAAAATCTCATAAG
AAGGAAAGCTTTTCCATGCTTATGGATTGGGCGGGATTAAAATTAGTCAA
AAGGGTCATTCCGGGTGAAAAGCAACTTTATAATTTCATGGGCATTTCCC
TCCAAATTCTCTCGTTCAATTTCTCTCTTTGGAGTTTAAAAGCACCCCAT
TTGCCAATTCCTTTTTGGAAACTCCCTTATACCCCTCCTTATTACAATA

NNNTTATGATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTAAAGATACCAGGTCTTGTAAGTATAGGTGA
TCTTCACAGGTGATACTGGACCACTAGAGGACAGATAGCCACTGAAGAGC
TTAAACACAGTGCAAAGATGCTGCCTATCCGGGCCAGGCAGAGGAGAATC
CGGAAAAATTCTGGGAGGTTAATCTGCTGAAGAAATACAACTTGTTTTCT
GGCTGGCTCTGGAGAGTCTGTGTTTCTTTGTTCATTCACCTTTCAGTAGT
GCTTACTACTAGATGTCAGGGACTTTCTTGGTGCTGAGGTACATGGCAAG
AAATCCTGACACAAGTCTTGTGTAATCTGAAGGGAAGAAGATAGTGTTAA
TACAAGACCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCCCTCCTTCCCACCC
NCCCTCTCCCTCCCTCCCTCCTTTCCTTCTTTCTTTCTTTCTTTCTTTCT
TTCCTTCTTTCTTTTCTTCTTTCTTTCTTTCCCTCTCTCTCTCTCCCTCT
CTCTCTCTCCTTCCTTCCTTTCTTTCTTTTCTCTCTCTTCTCTCTCTCTT
TCTCTCTTTCTTTCTCTCTCTTTTTTCCCCNCATATATATTCTTTTCATC
AAACCCCCCCCCGGGTCAATTGCTTTATAACACTTGCCCCTCGGTGTTAT
CCGGTACCCCCTTTCACTTATCACCTTTTCCCCCTCCCCACTTTTTATCG
CCTTCCGCTCATTTGTGTCCTCTTATCTCTCGTTATAATTCCTCTATATC
CTTACTTTTCTTCTTTTTAATACTTTTTCTCACTTTGTATCCCTACTTTC
TCCCTCTTCTACATTCCTCCCACTTTCTCTTCTCCCTTTTTCTCCTGCTC
TTCTTTTTTCCCCTTTCATTTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_n02.g1 MSMg01no048_n02.g1 CHROMAT_FILE:
MSMg01no048_n02.g1 PHD_FILE: MSMg01no048_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:10 2005
         (620 letters)



>mm_chr4_47911053_47912072
          Length = 1020

 Score =  756 bits (391), Expect = 0.0
 Identities = 466/503 (92%), Gaps = 22/503 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcttgtaagtataggtgatcttcacaggtgatactggaccactagaggacagatagcc 60
           |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct: 528 ggtcttgtaagtataggtgatcttcagaggtgatactggacaagtagaggacagatagcc 469

                                                                       
Query: 61  actgaagagcttaaacacagtgcaaagatgctgcctatccgggccaggcagaggagaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actgaagagcttaaacacagtgcaaagatgctgcctatccgggccaggcagaggagaatc 409

                                                                       
Query: 121 cggaaaaattctgggaggttaatctgctgaagaaatacaacttgttttctggctggctct 180
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cggggaaattctgggaggttaatctgctgaagaaatacaacttgttttctggctggctct 349

                                                                       
Query: 181 ggagagtctgtgtttctttgttcattcacctttcagtagtgcttactactagatgtcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggagagtctgtgtttctttgttcattcacctttcagtagtgcttactactagatgtcagg 289

                                                                       
Query: 241 gactttcttggtgctgaggtacatggcaagaaatcctgacacaagtcttgtgtaatctga 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gactttcttggtgctgaggtagatggcaagaaatcctgacacaagtcttgtgtaatctga 229

                                                                       
Query: 301 agggaagaagatagtgttaatacaagacctttctttctttctttctttctttctttcttt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 228 agggaagaagatagtgttaaaacaagacctttctttctttctttctttctttctttcttt 169

                                                                       
Query: 361 ctttctttctttctttctttctttctttctttctttctttctt---tc------------ 405
           ||||||||||||||||||||||||||||||| ||| ||| |||   ||            
Sbjct: 168 ctttctttctttctttctttctttctttcttccttccttccttccttccttccttccttc 109

                                                                       
Query: 406 -----tttctttctttctttctttctttctttctttctttctttctt-ccttccttcctt 459
                |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| 
Sbjct: 108 cttcctttctttctttctttctttctttctttctttctttctttctttccttcctccctc 49

                                  
Query: 460 ccttccttcct-tccttccttcc 481
           ||| ||| ||| ||| |||||||
Sbjct: 48  cctccctccctctccctccttcc 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 285
Number of extensions: 83
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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