BAC Information

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BAC

Clone NameMSMg01-048N20
Chromosome4 (Build37)
Map Location 76,439,416 - 76,439,676
singlet/doubletsinglet
Overlap geneLOC667858
Upstream geneLOC100039884, LOC667845, Ptprd
Downstream geneLOC667862
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048N20.T7 (MSMg01no048_n20.b1)MSMg01-048N20.TJ (MSMg01no048_n20.g1)
ACCAG278517AG278518
length1,2601,157
length of high quality
(start - end)
---263 (64 - 326)
definitionCHROMAT_FILE: MSMg01no048_n20.b1 PHD_FILE: MSMg01no048_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:16 2005CHROMAT_FILE: MSMg01no048_n20.g1 PHD_FILE: MSMg01no048_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTTACTGAG
AGGNAACAGCCCCTTTAAAAACTCCTCGAAAAACGGCNAAAGTTGTTTAA
AATCCTTTCAGGACTACCACACCCCACTGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTCTCTTTGATTTTTCTGAT
TGATCTACTCCTGAGTCCTTCGGCTTTACTTTCTGTCTCTGCTTTTCTTT
TTTTTCTCTTGGTTTTATCTATTGTTCATTTCTTTTTGTTTTTTATTTCT
TTAATTGTTTTATTCTTTTTTTCTTTCCTTTATTTTTTATTTTTTTTCTA
TTTTTTTCTTTTTATCTTCTTTTTCTTTCTTTTTTATTTTTTTCTCTGTT
TTTTTTTTTCTTCTCTTCTTTTTTTTTTTTTTTCTTTTTTTTCTTATCTA
TTTTCTTTCTATAGTTTACTTTTTTTTTTTTATTTTTTTTTTTTATTTCT
TTTTTCTTTTTATCTTTTTTTTTTATTTTTCACTACTCTTTATGTCTTTT
TTTTTTTATGTCTTCTTTTTCTTTTCTTATCTTTTCTTATTTCTCTAGTT
TTCTTCTCTTTTCNCTTTTCATTTTCTTTCTTCTCTATCTCCTTCAATAT
TCTCTCTTTG
GCCTCATAAAGTCCCCAGGGNNGTNGNGANGCTTACTGAAGTGCCTTGAA
AACTGCCCACCCCCCCCTGAAGTTTCCGGGTTTTGCTCAGGACGGTGCCC
GAAAGGACACAGGATGACAAATATTTTTGATAAAAAACAAATTAAAAAAA
AAGTTTCATGTGAATATAAATAAGTGAGGCACACTGAGACATAAGACATC
AGAGAAAGCATGATTCTTACTTTATCTACGGCTTAAATTCACTTCAGCTT
AGGGAATTTAAGCATAGCCCTAATTCCTGAGACACATATGCGGACTGTTA
GCAGGCAGTTTTCCAAAACACCAAACGATTACGTTCTTTCTCTCTTTTAA
GAACACTTTCTCTTTAAAAAAAAATCCTTTGCCCACTTTCTTGGAGTTCC
TATTACTGTGATAAGGCTTCTTGACTGAAAAGGAAAACAAAATTAAAAGA
TTTATTTTGCCTATCCTTCCACCATGTAAGGACGTGAATACAGGAACCTG
GAGCGCATGAGCTGGTATTAAACGCTCACTGGCTGCACTGCCTGTTTTGC
TCATACTACTTTCTTATACACTCTGGAACCACAGGCCTAGTGTAAACATC
CACAATGTTAGTTGGTTTCTCCTAATCATTCGAGAAAAAGCACCACTGTG
TTGCGTACACATCATTCTGGTGTTGACACTCTCCTTTTTGATGTTTACAT
ATGTCAAGTTTGTTTATAATTGTGTATCATATTTATTTATTTATTTATTC
ATCTTTTTATTTTTATATTACTCCTCTCTTTCAGCCTTTGATATTTTTCT
GTCTATATTCTTTCTTTTTTTCTTTTTTTATTTTTTTTTCTTTTTTTAAT
TATTTCTTTTCTTTTCTCTTTTTTATGTTTTATTTTTTATTTTTTACATT
CCTTTATTTTTTTCTTTTTTCACTTCTTTCTTTATTTGTCTTTTCTATTA
TACACTTTCTATTATATTTTGTTTCCTTTTTATTTTTTATATCTTTTATC
TTTCTACTCTTCTCTTATTACATTTATTATATCTATTTTTTTTTACTTTT
ATCTCTTTTTTTCAATACTCTTCCTCTTTNTCACTTAATCTTTCTTTATT
TGCTCCTTTCTACTTTCTTCGTCATTTCTTCATACTANCAATCTCACTAC
TCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_n20.g1 MSMg01no048_n20.g1 CHROMAT_FILE:
MSMg01no048_n20.g1 PHD_FILE: MSMg01no048_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:16 2005
         (263 letters)



>mm_chr4_76439216_76439877
          Length = 662

 Score =  391 bits (202), Expect = e-113
 Identities = 247/262 (94%), Gaps = 1/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccctgaagtttccgggttttgctcaggacggtgcccgaaaggacacaggatgacaaata 60
           |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct: 461 cccc-gaagtttccgggttttgctcaggacggtggccgaaaggaaacaggatgaaaaata 403

                                                                       
Query: 61  tttttgataaaaaacaaattaaaaaaaaagtttcatgtgaatataaataagtgaggcaca 120
           |||||||||||||||||||| ||||||||||||| || ||| ||||||||||||| ||||
Sbjct: 402 tttttgataaaaaacaaatttaaaaaaaagtttcttgagaacataaataagtgagtcaca 343

                                                                       
Query: 121 ctgagacataagacatcagagaaagcatgattcttactttatctacggcttaaattcact 180
           |||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 342 ctgagatataagacgtcagagaaagcatgattcttactttatctaaggtttaaattcact 283

                                                                       
Query: 181 tcagcttagggaatttaagcatagccctaattcctgagacacatatgcggactgttagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 282 tcagcttagggaatttaagcatagccctaattcctgagacacatatgtggactgttagca 223

                                 
Query: 241 ggcagttttccaaaacaccaaa 262
           | ||||||||||||||||||||
Sbjct: 222 gacagttttccaaaacaccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 662
Length adjustment: 9
Effective length of query: 254
Effective length of database: 653
Effective search space:   165862
Effective search space used:   165862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)